Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 4.5e-297 1023.8 523 100.0
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 4.0e-152 542.3 512 56.2
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 4.4e-151 538.9 485 61.0
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 1.0e-144 517.7 525 54.5
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 4.2e-138 495.7 517 54.0
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 4.7e-137 492.3 447 56.6
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 8.3e-134 481.5 520 52.5
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 1.4e-133 480.7 447 57.0
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 4.1e-133 479.2 517 52.8
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 5.0e-131 472.2 519 52.8
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 5.0e-131 472.2 447 57.0
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 1.5e-130 470.7 521 51.8
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 7.3e-130 468.4 523 50.9
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 1.2e-129 467.6 532 50.4
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 2.8e-129 466.5 464 52.6
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 3.6e-129 466.1 520 51.2
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 6.1e-129 465.3 518 52.1
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 3.0e-128 463.0 531 50.5
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 4.0e-128 462.6 453 56.1
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 6.8e-128 461.8 512 50.4
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 2.0e-127 460.3 521 50.1
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 3.4e-127 459.5 442 57.2
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 9.8e-127 458.0 452 54.4
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 2.2e-126 456.8 516 51.4
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 2.2e-126 456.8 514 51.6
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 2.9e-126 456.4 461 53.6
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 3.7e-126 456.1 514 49.6
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 6.4e-126 455.3 518 51.2
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 2.4e-125 453.4 442 53.8
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 4.1e-125 452.6 521 52.8
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 5.4e-125 452.2 440 56.6
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 7.0e-125 451.8 438 55.0
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 1.6e-124 450.7 455 53.0
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 1.6e-124 450.7 568 47.0
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 6.0e-124 448.7 443 51.7
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 1.0e-123 448.0 441 53.5
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 1.5e-122 444.1 522 49.0
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 4.3e-122 442.6 518 48.3
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 2.8e-121 439.9 523 49.5
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 2.8e-121 439.9 519 47.8
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 6.2e-121 438.7 438 54.3
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 8.0e-121 438.3 460 52.0
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 4.0e-120 436.0 437 54.0
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 8.9e-120 434.9 484 51.0
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.6e-119 433.3 441 53.5
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 4.4e-119 432.6 573 46.4
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 4.4e-119 432.6 445 53.3
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 3.7e-118 429.5 437 53.8
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 4.9e-118 429.1 440 52.5
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 4.1e-117 426.0 556 45.1
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 9.2e-117 424.9 495 50.3
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 1.2e-116 424.5 446 53.1
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 1.6e-116 424.1 458 47.8
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 1.3e-115 421.0 447 50.3
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 1.9e-114 417.2 441 51.5
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 2.5e-114 416.8 481 47.8
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 3.3e-114 416.4 392 56.4
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 3.3e-114 416.4 507 46.5
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 1.2e-113 414.5 447 47.9
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 8.1e-113 411.8 458 50.2
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 2.3e-112 410.2 439 50.8
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 3.4e-111 406.4 454 50.9
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 7.5e-111 405.2 449 49.9
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 1.7e-110 404.1 456 50.0
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 3.7e-110 402.9 446 49.3
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 1.9e-109 400.6 450 49.1
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 1.9e-109 400.6 491 47.5
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 2.4e-109 400.2 451 49.2
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 7.1e-109 398.7 451 49.7
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 7.1e-109 398.7 485 47.6
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 9.2e-109 398.3 485 47.4
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 9.2e-109 398.3 485 47.6
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 2.1e-108 397.1 452 48.9
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 2.1e-108 397.1 487 46.4
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 1.0e-107 394.8 475 46.9
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 1.7e-107 394.0 497 45.5
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 1.7e-107 394.0 444 45.7
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 8.6e-107 391.7 474 47.0
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 8.6e-107 391.7 474 47.0
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 1.5e-106 391.0 494 48.2
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 5.6e-106 389.0 449 48.3
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 5.6e-106 389.0 439 49.7
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 1.2e-105 387.9 474 46.8
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 1.8e-104 384.0 488 47.3
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 2.4e-104 383.6 534 44.2
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 2.0e-103 380.6 483 46.4
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 2.0e-103 380.6 350 56.3
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 3.4e-103 379.8 463 47.7
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 3.8e-102 376.3 519 41.4
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 9.2e-101 371.7 455 42.9
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 7.3e-98 362.1 498 39.6
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 7.3e-98 362.1 467 46.0
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.0e-91 340.1 283 62.5
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 1.3e-89 334.7 375 44.0
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 2.1e-89 334.0 366 47.8
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 1.1e-88 331.6 490 42.0
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 1.8e-88 330.9 451 43.0
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 4.0e-88 329.7 410 47.1
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 2.0e-79 300.8 468 38.7
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.3e-75 288.1 209 71.3
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 7.1e-69 265.8 375 40.8
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 4.1e-64 250.0 445 38.9
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 1.5e-58 231.5 316 44.6
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 7.4e-58 229.2 282 47.2
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 1.4e-56 224.9 191 63.4
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 1.8e-56 224.6 478 34.5
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.1e-56 223.4 303 44.6
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 1.0e-51 208.8 464 35.6
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 4.8e-49 199.9 296 40.2
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 1.4e-48 198.4 468 31.2
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 6.5e-46 189.5 141 65.2
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 8.5e-46 189.1 505 31.3
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 6.7e-43 179.5 234 43.2
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 2.3e-35 154.5 140 54.3
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.2e-34 152.1 124 62.9
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 7.5e-34 149.4 310 35.2
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 1.4e-32 145.2 119 59.7
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 1.9e-29 134.8 183 40.4
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.2e-28 132.1 135 51.9
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 8.0e-28 129.4 260 36.5
MBI12_g40856_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.7e-14 85.1 116 41.4
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 5.0e-14 83.6 192 30.2
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 1.9e-13 81.6 67 55.2
MBI16_g14988_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 7.3e-13 79.7 95 44.2
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 2.9e-09 67.8 150 33.3
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 2.7e-07 61.2 73 43.8
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 1.7e-06 58.5 63 44.4
TAR362G0264 Trochodendron aralioides HOM05D006020 ORTHO05D007665 8.6e-06 56.2 70 41.4


User provided reference genes

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