Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03478 Eucalyptus grandis HOM05D002674 ORTHO05D007700 7.0e-140 500.7 279 100.0
Ciclev10021537m.g Citrus clementina HOM05D002674 ORTHO05D007700 6.7e-82 308.1 291 66.3
ClCG10G010900 Citrullus lanatus HOM05D002674 ORTHO05D007700 1.1e-81 307.4 283 62.9
Prupe.8G261000 Prunus persica HOM05D002674 ORTHO05D007700 3.7e-80 302.4 293 63.1
MELO3C017958.2 Cucumis melo HOM05D002674 ORTHO05D007700 2.4e-79 299.7 285 60.4
CsaV3_4G000780 Cucumis sativus L. HOM05D002674 ORTHO05D007700 3.1e-79 299.3 285 60.4
Atru.chr5.1151 Acer truncatum HOM05D002674 ORTHO05D007700 1.2e-78 297.4 283 63.3
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 7.7e-78 294.7 291 63.6
Thecc.01G299900 Theobroma cacao HOM05D002674 ORTHO05D007700 5.0e-77 292.0 287 61.3
COL.COLO4_23350 Corchorus olitorius HOM05D002674 ORTHO05D007700 3.2e-76 289.3 285 60.4
CANSAT25G1821 Cannabis sativa HOM05D002674 ORTHO05D007700 5.5e-76 288.5 293 60.1
MD03G1287800 Malus domestica HOM05D002674 ORTHO05D007700 2.1e-75 286.6 295 60.7
Duzib138G1545 Durio zibethinus HOM05D002674 ORTHO05D007700 4.6e-75 285.4 285 59.3
MD11G1310500 Malus domestica HOM05D002674 ORTHO05D007700 4.6e-75 285.4 284 62.7
TWI23G1032 Tripterygium wilfordii HOM05D002674 ORTHO05D007700 1.0e-74 284.3 277 62.8
FAN27G2781 Fragaria x ananassa HOM05D002674 ORTHO05D007700 6.7e-74 281.6 287 59.6
Gohir.D08G085300 Gossypium hirsutum HOM05D002674 ORTHO05D007700 1.1e-73 280.8 287 58.9
Gorai.004G089800 Gossypium raimondii HOM05D002674 ORTHO05D007700 1.1e-73 280.8 283 59.4
Gohir.A08G075900 Gossypium hirsutum HOM05D002674 ORTHO05D007700 2.0e-73 280.0 283 59.0
Manes.01G218600 Manihot esculenta HOM05D002674 ORTHO05D007700 8.2e-72 274.6 282 65.2
CiPaw.07G108400 Carya illinoinensis HOM05D002674 ORTHO05D007700 2.0e-70 270.0 285 60.4
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 1.3e-69 267.3 283 56.9
TAR365G1234 Trochodendron aralioides HOM05D002674 ORTHO05D007700 2.2e-69 266.5 279 58.1
Phvul.007G146100 Phaseolus vulgaris HOM05D002674 ORTHO05D007700 8.5e-69 264.6 286 59.8
Glyma.02G018300 Glycine max HOM05D002674 ORTHO05D007700 1.9e-68 263.5 286 57.0
Actinidia24347 Actinidia chinensis HOM05D002674 ORTHO05D007700 1.2e-67 260.8 278 60.1
Potri.014G129500 Populus trichocarpa HOM05D002674 ORTHO05D007700 6.1e-67 258.5 282 57.1
Lj1A25T5 Lonicera japonica HOM05D002674 ORTHO05D007700 1.8e-66 256.9 293 58.7
Sabra14G0096100 Salix brachista HOM05D002674 ORTHO05D007700 3.9e-66 255.8 283 56.9
QL12p028514 Quercus lobata HOM05D002674 ORTHO05D007700 5.2e-66 255.4 305 56.4
THA.LOC104815928 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 1.1e-65 254.2 285 58.6
Glyma.10G018600 Glycine max HOM05D002674 ORTHO05D007700 1.5e-65 253.8 295 59.3
RcHm_v2.0_Chr6g0293961 Rosa chinensis HOM05D002674 ORTHO05D007700 2.0e-65 253.4 293 55.3
Potri.002G204700 Populus trichocarpa HOM05D002674 ORTHO05D007700 2.6e-65 253.1 284 56.0
FAN24G1157 Fragaria x ananassa HOM05D002674 ORTHO05D007700 3.3e-65 252.7 287 55.7
FAN20G3185 Fragaria x ananassa HOM05D002674 ORTHO05D007700 1.7e-64 250.4 287 55.4
Lj5g0010238 Lotus japonicus HOM05D002674 ORTHO05D007700 2.2e-64 250.0 277 56.7
Cfa005916 Carpinus fangiana HOM05D002674 ORTHO05D007700 3.7e-64 249.2 285 57.5
FvH4_2g25690 Fragaria vesca HOM05D002674 ORTHO05D007700 4.8e-64 248.8 287 55.4
MBI19_g25354_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D007700 4.8e-64 248.8 292 57.2
FAN15G1012 Fragaria x ananassa HOM05D002674 ORTHO05D007700 1.8e-63 246.9 287 55.1
Sed0013149 Sechium edule HOM05D002674 ORTHO05D007700 1.8e-63 246.9 268 56.7
AT4G02425 Arabidopsis thaliana HOM05D002674 ORTHO05D007700 2.0e-62 243.4 288 55.6
Carub.0006s3472 Capsella rubella HOM05D002674 ORTHO05D007700 2.6e-62 243.0 278 56.5
Aqoxy5G00752 Aquilegia oxysepala HOM05D002674 ORTHO05D007700 7.7e-62 241.5 296 53.0
Psat6g166040 Pisum sativum HOM05D002674 ORTHO05D007700 1.3e-61 240.7 285 53.7
CARHR250690 Cardamine hirsuta HOM05D002674 ORTHO05D007700 6.5e-61 238.4 281 54.1
Sp6g02330 Schrenkiella parvula HOM05D002674 ORTHO05D007700 8.5e-61 238.0 277 53.4
EL10Ac7g17509 Beta vulgaris HOM05D002674 ORTHO05D007700 1.5e-60 237.3 319 51.1
Ca_10339_v3 Cicer arietinum L. HOM05D002674 ORTHO05D007700 1.5e-60 237.3 288 53.1
Medtr1g088580 Medicago truncatula HOM05D002674 ORTHO05D007700 3.2e-60 236.1 281 56.6
TAR636G1278 Trochodendron aralioides HOM05D002674 ORTHO05D007700 4.2e-60 235.7 294 52.7
Cc01_g20810 Coffea canephora HOM05D002674 ORTHO05D007700 5.5e-60 235.3 287 54.0
CSS0049735 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 7.2e-60 235.0 288 57.3
Thhalv10028893m.g Eutrema salsugineum HOM05D002674 ORTHO05D007700 1.0e-58 231.1 276 53.3
Rhsim01G0243300 Rhododendron simsii HOM05D002674 ORTHO05D007700 2.3e-58 229.9 294 56.8
Hund18157 Selenicereus undatus HOM05D002674 ORTHO05D007700 6.7e-58 228.4 288 56.2
HanXRQChr10g0284651 Helianthus annuus HOM05D002674 ORTHO05D007700 8.8e-58 228.0 297 50.5
C02p38980 Brassica napus HOM05D002674 ORTHO05D007700 1.2e-57 227.6 275 52.0
A02p24720 Brassica napus HOM05D002674 ORTHO05D007700 2.0e-57 226.9 275 52.4
BolC2t09909H Brassica oleracea HOM05D002674 ORTHO05D007700 2.0e-57 226.9 275 52.0
Ah.15g093240 Amaranthus hybridus HOM05D002674 ORTHO05D007700 5.7e-57 225.3 307 51.5
BraA02t07459Z Brassica rapa HOM05D002674 ORTHO05D007700 5.7e-57 225.3 273 51.3
SGA_v2.0_scaffold1G00369 Striga asiatica HOM05D002674 ORTHO05D007700 7.5e-57 224.9 284 54.6
BcaC03g16124 Brassica carinata HOM05D002674 ORTHO05D007700 1.3e-56 224.2 275 51.6
Sabra02G0154700 Salix brachista HOM05D002674 ORTHO05D008110 1.3e-56 224.2 272 54.0
THA.LOC104825970 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 1.3e-56 224.2 302 53.6
Sopen06g003880 Solanum pennellii HOM05D002674 ORTHO05D007700 6.3e-56 221.9 288 53.1
AL6G50650 Arabidopsis lyrata HOM05D002674 ORTHO05D007700 1.4e-55 220.7 237 60.3
Nitab4.5_0002470g0100 Nicotiana tabacum HOM05D002674 ORTHO05D007700 1.8e-55 220.3 291 52.6
Sc24g0003790 Simmondsia chinensis HOM05D002674 ORTHO05D007700 1.8e-55 220.3 302 50.3
Solyc06g009120.3 Solanum lycopersicum HOM05D002674 ORTHO05D007700 1.8e-55 220.3 288 52.8
PGSC0003DMG402017938 Solanum tuberosum HOM05D002674 ORTHO05D007700 1.8e-55 220.3 288 53.5
Lalb_Chr06g0163511 Lupinus albus HOM05D002674 ORTHO05D007700 3.1e-55 219.5 272 56.6
Lsat_1_v5_gn_9_5620 Lactuca sativa HOM05D002674 ORTHO05D007700 7.0e-55 218.4 277 53.8
VMungo0720G0138 Vigna mungo HOM05D002674 ORTHO05D007700 9.1e-55 218.0 256 59.4
Migut.D00215 Erythranthe guttata HOM05D002674 ORTHO05D007700 2.0e-54 216.9 282 55.0
TPR.G34010 Trifolium pratense HOM05D002674 ORTHO05D007700 2.9e-53 213.0 283 49.8
Nitab4.5_0005805g0020 Nicotiana tabacum HOM05D002674 ORTHO05D007700 1.9e-52 210.3 288 51.7
HPP92_025205 Vanilla planifolia HOM05D002674 ORTHO05D007700 2.5e-52 209.9 279 53.0
CSS0000533 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 6.1e-51 205.3 285 50.5
Nn3g21481 Nelumbo nucifera HOM05D002674 ORTHO05D007700 4.0e-50 202.6 187 63.1
Hma1.2p1_0491F.1_g164500 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 8.8e-50 201.4 208 63.9
CDE11G0633 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 2.0e-49 200.3 280 45.7
Lsat_1_v5_gn_7_11800 Lactuca sativa HOM05D002674 ORTHO05D007700 2.0e-49 200.3 256 53.1
CDE05G2513 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 7.5e-49 198.4 279 45.5
Aa31LG1G9740 Aethionema arabicum HOM05D002674 ORTHO05D007700 1.3e-48 197.6 284 48.6
Carub.0001s0195 Capsella rubella HOM05D002674 ORTHO05D007700 1.1e-47 194.5 276 52.2
Peaxi162Scf00399g00714 Petunia axillaris HOM05D002674 ORTHO05D007700 1.1e-47 194.5 314 46.8
PSO832G4034 Papaver somniferum HOM05D002674 ORTHO05D007700 1.4e-47 194.1 301 49.5
BcaB05g23628 Brassica carinata HOM05D002674 ORTHO05D007700 2.0e-46 190.3 213 55.9
arahy.Tifrunner.gnm1.ann1.2P60TQ Arachis hypogaea HOM05D002674 ORTHO05D007700 2.8e-43 179.9 253 52.6
vmacro15007 Vaccinium macrocarpon HOM05D002674 ORTHO05D007700 3.0e-42 176.4 252 51.2
ECA247G3124 Erigeron canadensis HOM05D002674 ORTHO05D007700 4.0e-42 176.0 260 50.0
AUR62033139 Chenopodium quinoa HOM05D002674 ORTHO05D007700 1.5e-41 174.1 227 51.5
arahy.Tifrunner.gnm1.ann1.YN8C8B Arachis hypogaea HOM05D002674 ORTHO05D007700 2.6e-41 173.3 251 51.0
DCAR_002828 Daucus carota HOM05D002674 ORTHO05D007700 5.7e-41 172.2 268 53.0
unitig_22.g5241 Utricularia gibba HOM05D002674 ORTHO05D007700 1.0e-37 161.4 234 51.3
ATR0796G100 Amborella trichopoda HOM05D002674 ORTHO05D007700 2.3e-37 160.2 289 40.8
AUR62008632 Chenopodium quinoa HOM05D002674 ORTHO05D007700 1.9e-36 157.1 180 56.1
Oeu054122.1 Olea europaea HOM05D002674 ORTHO05D007700 7.3e-36 155.2 178 58.4
Aa31LG5G2060 Aethionema arabicum HOM05D002674 ORTHO05D007700 2.1e-35 153.7 245 46.9
CAN.G1280.1 Capsicum annuum HOM05D002674 ORTHO05D007700 9.2e-31 138.3 249 43.8
SEGI_12569 Sequoiadendron giganteum HOM05D002674 ORTHO05D007700 1.7e-29 134.0 346 34.7
HPP92_006921 Vanilla planifolia HOM05D002674 ORTHO05D007700 3.6e-27 126.3 236 45.3
Oeu053149.1 Olea europaea HOM05D002674 ORTHO05D007700 4.7e-27 125.9 179 51.4
Os01g0316500 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D007700 3.1e-26 123.2 175 45.7
Zm00001eb127170 Zea mays HOM05D002674 ORTHO05D007700 9.8e-25 118.2 240 41.2
Zm00001eb285590 Zea mays HOM05D002674 ORTHO05D007700 4.9e-24 115.9 228 38.6
CANSAT56G3445 Cannabis sativa HOM05D002674 ORTHO05D007700 3.6e-19 99.8 100 58.0
Hma1.2p1_0491F.1_g164510 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 1.1e-18 98.2 115 62.6
BolC6t36475H Brassica oleracea HOM05D000186 ORTHO05D015008 1.7e-16 90.9 95 51.6
BcaC03g16430 Brassica carinata HOM05D002674 ORTHO05D007700 1.6e-14 84.3 84 53.6
Zm00001eb018450 Zea mays HOM05D002674 ORTHO05D007700 3.0e-13 80.1 199 39.7
C02p62500 Brassica napus HOM05D002674 ORTHO05D007700 1.4e-10 71.2 53 64.2
C02p42550 Brassica napus HOM05D000186 ORTHO05D015008 3.1e-10 70.1 41 75.6
C05p48610 Brassica napus HOM05D002674 ORTHO05D007700 3.1e-10 70.1 53 62.3
C08p25960 Brassica napus HOM05D002674 ORTHO05D007700 3.1e-10 70.1 53 62.3
BcaB04g18179 Brassica carinata HOM05D002674 ORTHO05D007700 5.2e-10 69.3 39 76.9
BolC1t01853H Brassica oleracea HOM05D002674 ORTHO05D007700 6.8e-10 68.9 53 62.3
BcaB07g32361 Brassica carinata HOM05D002674 ORTHO05D007700 1.2e-09 68.2 87 47.1
C06p13190 Brassica napus HOM05D002674 ORTHO05D015008 1.2e-09 68.2 41 73.2
A08p09760 Brassica napus HOM05D002674 ORTHO05D007700 2.0e-09 67.4 39 74.4
BraA08t32971Z Brassica rapa HOM05D002674 ORTHO05D007700 2.0e-09 67.4 39 74.4
A09p66240 Brassica napus HOM05D002674 ORTHO05D007700 2.6e-09 67.0 37 78.4
BcaB06g28993 Brassica carinata HOM05D002674 ORTHO05D007700 5.8e-09 65.9 37 78.4
BolC9t55650H Brassica oleracea HOM05D002674 ORTHO05D007700 7.6e-09 65.5 37 78.4
C09p27860 Brassica napus HOM05D002674 ORTHO05D007700 8.4e-08 62.0 37 75.7


User provided reference genes

Program Settings