Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 4.2e-248 860.9 440 100.0
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 2.6e-197 692.2 468 73.7
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 9.9e-197 690.3 441 75.3
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 8.4e-196 687.2 438 76.5
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 1.1e-195 686.8 440 76.6
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 1.9e-195 686.0 447 75.2
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 3.2e-195 685.3 440 75.5
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 9.2e-195 683.7 442 75.1
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 9.2e-195 683.7 447 74.7
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 1.6e-194 682.9 439 76.5
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 2.1e-194 682.6 446 74.9
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 7.8e-194 680.6 442 75.8
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 3.9e-193 678.3 439 75.4
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 1.5e-192 676.4 439 74.9
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 3.3e-192 675.2 439 75.9
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 4.3e-192 674.9 451 73.8
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 5.6e-192 674.5 443 74.7
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 5.6e-192 674.5 433 75.8
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 2.8e-191 672.2 440 72.7
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 1.8e-190 669.5 440 74.3
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 2.4e-190 669.1 438 74.0
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 4.0e-190 668.3 413 78.5
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 2.0e-189 666.0 431 75.9
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 2.6e-189 665.6 438 74.4
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 7.6e-189 664.1 441 74.4
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 8.4e-188 660.6 452 71.9
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 3.2e-187 658.7 439 74.0
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 4.2e-187 658.3 439 73.6
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 5.1e-185 651.4 435 73.8
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 4.3e-184 648.3 436 73.2
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 6.2e-183 644.4 439 72.0
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 6.2e-183 644.4 430 74.9
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 8.1e-183 644.0 438 72.4
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 9.0e-182 640.6 407 75.9
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 4.5e-181 638.3 441 69.2
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 7.6e-181 637.5 440 69.5
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 2.2e-180 636.0 421 72.0
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 2.9e-180 635.6 432 71.1
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 4.9e-180 634.8 444 69.8
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 8.4e-180 634.0 440 69.1
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 1.1e-179 633.6 386 78.5
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 1.9e-179 632.9 436 70.9
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 2.7e-178 629.0 444 68.2
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 6.2e-175 617.8 442 68.6
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 6.2e-175 617.8 442 68.6
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 1.8e-174 616.3 416 71.9
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 1.8e-174 616.3 388 76.8
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 3.4e-173 612.1 446 67.5
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 3.4e-173 612.1 403 73.7
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 2.9e-172 609.0 431 71.0
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 2.9e-172 609.0 457 66.3
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 4.6e-170 601.7 445 67.2
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 8.7e-169 597.4 416 70.0
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 6.9e-166 587.8 441 65.1
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 1.2e-165 587.0 388 70.4
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 1.5e-165 586.6 394 74.6
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 3.4e-165 585.5 650 50.2
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 2.7e-162 575.9 447 66.0
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 6.7e-161 571.2 548 55.3
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 2.2e-159 566.2 458 64.6
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 1.2e-157 560.5 438 64.8
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.0e-156 557.4 441 64.6
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 3.8e-156 555.4 361 74.2
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 1.9e-155 553.1 433 63.0
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 4.2e-155 552.0 351 75.8
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 3.0e-153 545.8 347 75.2
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 1.7e-151 540.0 366 71.3
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 1.4e-150 537.0 426 64.3
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 6.9e-150 534.6 438 62.8
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 2.5e-147 526.2 443 60.9
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 5.5e-147 525.0 343 75.5
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 2.1e-146 523.1 456 61.4
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 2.7e-146 522.7 338 73.4
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 2.8e-143 512.7 559 50.6
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 4.1e-142 508.8 408 60.8
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 5.5e-139 498.4 439 56.0
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 4.7e-138 495.4 437 60.6
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 4.8e-135 485.3 319 72.7
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 6.3e-135 485.0 416 58.2
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 1.8e-134 483.4 416 57.9
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 1.9e-131 473.4 480 55.0
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 7.7e-125 451.4 446 55.2
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 2.7e-122 443.0 298 73.2
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 8.0e-122 441.4 295 72.5
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 1.5e-120 437.2 294 71.4
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 3.1e-118 429.5 291 72.5
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 3.2e-110 402.9 287 69.3
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 3.7e-103 379.4 448 47.3
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 6.0e-101 372.1 248 72.6
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 3.6e-98 362.8 301 63.1
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 4.9e-87 325.9 435 41.1
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 4.9e-87 325.9 316 55.4
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 2.7e-85 320.1 228 68.4
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 1.1e-81 308.1 229 69.4
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 4.9e-79 299.3 456 39.0
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 1.1e-65 255.0 170 72.9
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 1.2e-64 251.5 200 62.5
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 1.4e-54 218.0 153 70.6
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 1.1e-49 201.8 120 77.5
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 4.2e-46 189.9 409 32.5
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 3.0e-44 183.7 146 61.0
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 9.0e-41 172.2 115 71.3
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 1.2e-40 171.8 101 81.2
arahy.Tifrunner.gnm1.ann1.4L0SCR Arachis hypogaea HOM05D007061 ORTHO05D009017 3.2e-38 163.7 103 75.7
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 2.7e-37 160.6 108 74.1
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 1.3e-34 151.8 105 74.3
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 1.3e-34 151.8 105 74.3
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 2.4e-33 147.5 74 93.2
AUR62041050 Chenopodium quinoa HOM05D007061 ORTHO05D009017 8.0e-21 105.9 62 79.0
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 1.4e-12 78.6 56 62.5
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 1.4e-09 68.6 45 73.3
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.6e-08 65.1 46 76.1
MCO14G211 Micromonas commoda HOM05D027329 ORTHO05D268215 3.5e-08 63.9 205 24.4
MD05G1238100 Malus domestica HOM05D007061 ORTHO05D009017 1.0e-07 62.4 43 69.8
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 1.9e-06 58.2 79 44.3


User provided reference genes

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