Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 6.9e-125 450.7 231 100.0
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 8.5e-107 390.6 229 85.2
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.0e-104 383.6 228 84.6
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 3.9e-104 381.7 229 83.4
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 5.2e-104 381.3 227 84.1
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 8.8e-104 380.6 227 82.8
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 2.6e-103 379.0 227 82.4
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 1.3e-102 376.7 227 83.3
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 1.7e-102 376.3 227 81.1
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 2.8e-102 375.6 226 82.7
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 2.8e-102 375.6 227 82.4
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 2.8e-102 375.6 227 83.7
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 2.8e-102 375.6 226 84.1
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 3.7e-102 375.2 229 83.8
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 6.3e-102 374.4 227 81.9
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 6.3e-102 374.4 227 81.5
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 8.2e-102 374.0 226 82.7
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 1.1e-101 373.6 229 81.7
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 1.1e-101 373.6 227 80.6
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 1.8e-101 372.9 227 81.5
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 3.1e-101 372.1 227 80.6
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 9.1e-101 370.5 228 82.5
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 1.2e-100 370.2 228 79.4
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 1.2e-100 370.2 265 72.5
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 2.6e-100 369.0 227 81.5
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.6e-100 369.0 227 81.9
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 3.5e-100 368.6 227 80.2
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 4.5e-100 368.2 223 81.6
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 1.0e-99 367.1 229 79.0
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 1.3e-99 366.7 228 79.4
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 1.3e-99 366.7 227 80.6
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 2.2e-99 365.9 227 80.2
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 2.9e-99 365.5 227 81.1
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 2.9e-99 365.5 227 81.1
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 2.9e-99 365.5 228 81.1
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 5.0e-99 364.8 229 79.0
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 5.0e-99 364.8 229 79.0
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 5.0e-99 364.8 229 79.5
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 5.0e-99 364.8 226 81.0
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 6.5e-99 364.4 227 79.3
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 8.5e-99 364.0 228 78.5
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.1e-98 363.6 228 78.9
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 1.1e-98 363.6 223 83.9
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.5e-98 363.2 227 81.5
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 5.5e-98 361.3 227 81.1
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 7.2e-98 360.9 222 81.5
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.2e-97 360.1 227 79.3
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-97 360.1 227 78.4
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 1.2e-97 360.1 224 82.6
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 1.6e-97 359.8 229 78.6
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 2.1e-97 359.4 228 78.9
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 3.6e-97 358.6 227 79.7
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 3.6e-97 358.6 227 76.2
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 4.7e-97 358.2 227 77.5
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 8.0e-97 357.5 228 77.2
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 1.0e-96 357.1 223 80.7
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.0e-96 357.1 226 78.8
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 1.8e-96 356.3 227 75.3
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 1.8e-96 356.3 216 81.9
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 2.3e-96 355.9 229 77.3
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 5.2e-96 354.8 227 76.2
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 6.7e-96 354.4 227 74.9
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.8e-96 354.0 227 79.3
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.2e-95 353.6 227 79.3
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.5e-95 353.2 223 79.4
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.5e-95 353.2 227 79.7
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 2.0e-95 352.8 227 76.2
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.0e-95 352.8 229 76.4
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 2.6e-95 352.4 227 78.4
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 2.6e-95 352.4 228 75.0
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.3e-95 352.1 224 80.4
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 3.3e-95 352.1 218 80.3
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 4.4e-95 351.7 223 76.2
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 7.5e-95 350.9 227 78.0
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 7.5e-95 350.9 228 74.1
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 9.7e-95 350.5 227 78.9
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 1.3e-94 350.1 228 76.3
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 2.2e-94 349.4 226 76.1
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 2.2e-94 349.4 227 78.4
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 2.2e-94 349.4 226 76.5
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 2.8e-94 349.0 227 74.9
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 2.8e-94 349.0 226 75.7
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 3.7e-94 348.6 229 75.1
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 6.3e-94 347.8 227 75.8
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 6.3e-94 347.8 227 75.8
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 8.2e-94 347.4 228 75.4
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 1.4e-93 346.7 228 75.0
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.8e-93 346.3 223 78.5
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 3.1e-93 345.5 226 74.8
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 9.1e-93 344.0 228 74.1
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.2e-92 343.6 230 73.0
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 1.2e-92 343.6 228 75.0
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 1.2e-92 343.6 227 74.0
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 4.5e-92 341.7 227 75.3
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.2e-91 339.3 202 82.7
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 5.0e-91 338.2 227 75.3
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 1.1e-90 337.0 222 76.1
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 6.1e-89 331.3 222 74.8
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 8.0e-89 330.9 227 72.7
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 1.0e-88 330.5 226 72.6
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 5.2e-88 328.2 230 72.2
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 5.2e-88 328.2 227 73.1
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.2e-87 327.0 230 71.7
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 1.5e-87 326.6 227 72.7
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 2.0e-87 326.2 222 73.9
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.6e-87 325.9 227 74.9
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 4.4e-87 325.1 227 72.2
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 7.5e-87 324.3 230 71.7
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 9.8e-87 323.9 227 72.2
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 1.3e-86 323.6 227 71.8
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 1.7e-86 323.2 227 71.4
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 2.2e-86 322.8 207 77.3
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.2e-84 317.0 230 70.0
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 7.7e-84 314.3 192 80.7
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.3e-83 312.8 309 54.4
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 2.3e-83 312.8 187 85.0
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 6.5e-83 311.2 230 70.4
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 1.5e-82 310.1 207 75.4
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 1.9e-82 309.7 204 76.5
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.5e-82 309.3 222 73.4
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 3.3e-82 308.9 231 66.2
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 1.8e-80 303.1 221 67.4
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 4.0e-80 302.0 221 69.2
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.7e-78 296.6 232 66.4
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 2.2e-78 296.2 231 63.6
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 3.7e-78 295.4 195 76.9
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 3.1e-77 292.4 231 66.2
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 5.9e-76 288.1 178 80.3
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 3.3e-66 255.8 232 60.8
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-65 253.8 148 83.8
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 4.7e-65 251.9 182 69.8
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 6.2e-65 251.5 220 58.6
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 2.3e-64 249.6 226 57.1
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 5.4e-61 238.4 133 88.0
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 7.0e-61 238.0 209 56.0
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 6.0e-60 235.0 213 59.2
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.9e-59 232.3 144 79.2
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 4.7e-57 225.3 219 53.4
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.7e-54 216.9 124 86.3
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 2.9e-54 216.1 138 76.8
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 1.1e-50 204.1 144 72.2
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 1.6e-49 200.3 142 71.8
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 4.4e-47 192.2 119 79.0
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 3.8e-46 189.1 135 71.1
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 7.1e-45 184.9 144 64.6
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 9.2e-45 184.5 134 70.9
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 6.6e-43 178.3 202 47.0
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 5.6e-42 175.3 146 60.3
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 4.7e-41 172.2 147 61.2
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 3.8e-38 162.5 126 65.9
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 8.4e-38 161.4 185 45.4
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 1.4e-37 160.6 121 66.1
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 3.9e-35 152.5 85 85.9
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.5e-34 150.6 88 83.0
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 7.3e-34 148.3 116 66.4
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 7.3e-34 148.3 191 45.0
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 1.6e-33 147.1 109 69.7
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 8.1e-33 144.8 97 73.2
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 2.6e-31 139.8 102 70.6
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 5.8e-31 138.7 102 67.6
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 3.8e-30 136.0 90 74.4
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 2.7e-28 129.8 82 79.3
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 4.6e-28 129.0 85 76.5
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 1.3e-27 127.5 98 69.4
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.8e-27 127.1 85 69.4
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 2.3e-27 126.7 69 88.4
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 5.1e-27 125.6 95 69.5
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 2.5e-26 123.2 71 83.1
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 3.7e-25 119.4 77 77.9
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 6.2e-25 118.6 85 69.4
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 9.0e-24 114.8 145 46.9
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.5e-23 112.5 85 67.1
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 1.6e-20 104.0 84 66.7
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 2.3e-19 100.1 63 74.6
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 1.1e-18 97.8 187 33.2
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 1.9e-18 97.1 61 73.8
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 6.2e-17 92.0 66 69.7
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 1.4e-16 90.9 51 84.3
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 1.5e-15 87.4 219 30.6
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 1.7e-14 84.0 60 66.7
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 2.1e-12 77.0 187 30.5
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 1.0e-11 74.7 49 71.4
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 5.1e-11 72.4 67 55.2


User provided reference genes

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