Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 2162.5 1129 100.0
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1655.6 1115 77.7
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1632.8 1143 75.2
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1614.4 1136 75.0
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1594.3 1134 73.1
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1588.2 1139 73.7
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1573.5 1143 73.3
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1571.6 1124 73.8
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1571.2 1135 72.8
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1570.1 1118 72.4
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1560.8 1127 72.2
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1557.7 1116 71.6
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1557.0 1127 72.2
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1556.2 1116 72.8
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1544.6 1142 71.5
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1544.3 1116 72.2
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1538.5 1013 77.9
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1535.8 1114 72.0
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1532.3 1114 71.7
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1529.6 1131 71.8
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1525.4 1112 72.5
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1525.4 1130 72.0
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1518.4 1125 70.7
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1512.3 1137 70.8
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1509.2 1205 68.2
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1501.1 1141 69.9
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1498.0 1244 65.8
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1486.9 1127 70.4
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1486.5 1142 70.1
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1482.6 1182 67.3
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1482.2 1142 67.9
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1479.2 1135 68.0
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1468.4 1119 68.7
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1464.1 995 76.3
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1455.3 1142 67.0
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1450.6 1141 66.3
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1442.9 1131 66.3
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1437.6 1137 66.8
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1429.8 1157 66.2
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1429.5 1127 68.1
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1429.1 1120 67.3
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1416.4 1132 66.1
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1415.2 1131 67.6
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1415.2 1132 67.5
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1414.1 1176 65.0
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1412.1 1132 67.6
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1410.6 1112 65.6
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1405.6 1132 67.5
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1405.2 1116 64.9
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1397.9 1131 67.4
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1397.1 1115 63.7
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1393.6 1115 64.3
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1391.7 1122 66.7
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1389.0 1142 64.0
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1388.6 1092 67.0
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1387.5 1123 67.4
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1386.7 1143 66.0
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1385.5 1121 64.9
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1384.8 1131 62.8
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1379.4 1160 62.9
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1379.0 1087 66.3
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1377.8 1117 65.5
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1375.1 1086 65.0
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1375.1 1139 64.2
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1372.1 1104 64.7
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1367.1 1122 65.3
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1366.7 1139 64.4
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1365.9 1045 65.7
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1365.9 1046 68.6
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1364.7 1113 65.0
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1364.7 1140 63.7
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1359.7 1114 63.8
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1353.6 1124 64.2
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1350.5 1041 65.4
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1349.3 1116 63.6
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1349.3 1143 63.2
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1349.0 1059 64.5
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1340.5 1086 63.4
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1339.3 1071 64.1
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1338.6 1115 63.5
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1336.2 1130 63.2
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1334.3 1073 63.9
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1333.5 1140 63.3
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1332.8 1123 64.6
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1332.0 1072 63.8
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1331.6 1071 63.8
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1330.1 1112 63.9
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1326.2 1083 63.3
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1304.3 1121 62.2
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1290.8 1382 52.1
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1286.9 910 72.7
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1275.4 1080 61.9
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1268.8 1046 63.3
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1255.7 1049 63.1
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1255.0 1080 61.4
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1244.6 1019 61.8
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1217.6 1126 57.6
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1216.1 1085 59.1
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1201.8 1053 61.3
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1179.5 909 66.1
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1175.6 1046 58.7
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1162.5 1100 58.0
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1151.3 880 70.0
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 0.0e+00 1113.6 1103 55.8
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1102.8 819 70.3
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1099.7 1116 54.8
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 7.7e-312 1073.9 953 59.0
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.3e-309 1066.6 675 79.1
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 1.8e-298 1029.6 1081 51.3
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 5.2e-282 974.9 779 65.1
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 5.0e-277 958.4 1007 51.2
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 3.1e-271 939.1 960 50.2
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 9.5e-260 901.0 657 72.5
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 7.3e-252 874.8 1022 47.2
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.7e-232 809.3 537 77.5
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.7e-232 809.3 537 77.5
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.7e-221 773.9 595 67.2
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 1.3e-205 721.1 1043 40.7
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 7.0e-162 575.9 390 76.7
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 5.8e-92 343.6 399 49.6
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 3.3e-63 248.1 201 64.7
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 1.7e-62 245.7 1050 25.3
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 8.8e-56 223.4 143 74.8
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.7e-54 218.0 199 53.8
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 7.0e-53 213.8 164 65.2
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 2.6e-47 195.3 171 60.2
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 2.8e-46 191.8 215 49.8
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.5e-39 169.5 174 54.6
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 8.3e-38 163.7 173 50.9
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 5.4e-37 161.0 668 24.0
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 3.5e-36 158.3 388 29.4
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 3.6e-33 148.3 150 52.7
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 5.4e-29 134.4 134 56.7
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 2.2e-22 112.5 97 58.8
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.9e-19 102.1 106 48.1
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 1.2e-17 96.7 248 28.2
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 1.6e-17 96.3 73 69.9
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.1e-13 83.6 82 61.0
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 7.0e-13 80.9 68 61.8
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 1.6e-12 79.7 273 28.2
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 1.9e-10 72.8 50 58.0
Nitab4.5_0000282g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 6.2e-09 67.8 76 50.0
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 2.3e-08 65.9 48 64.6
COL.COLO4_03377 Corchorus olitorius HOM05D004682 ORTHO05D006197 8.9e-08 63.9 80 61.2
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 4.4e-07 61.6 122 34.4
PGSC0003DMG400017058 Solanum tuberosum HOM05D004682 ORTHO05D026186 8.3e-06 57.4 86 40.7


User provided reference genes

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