Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03417 Eucalyptus grandis HOM05D001970 ORTHO05D004069 1.2e-45 186.0 90 100.0
Eucgr.K03416 Eucalyptus grandis HOM05D001970 ORTHO05D004069 4.6e-32 141.0 103 71.8
Eucgr.L02572 Eucalyptus grandis HOM05D001970 ORTHO05D004069 4.3e-30 134.4 110 63.6
Eucgr.K03418 Eucalyptus grandis HOM05D001970 ORTHO05D004069 5.6e-30 134.0 110 63.6
Eucgr.K03413 Eucalyptus grandis HOM05D001970 ORTHO05D004069 2.1e-29 132.1 105 64.8
Eucgr.L02763 Eucalyptus grandis HOM05D001970 ORTHO05D004069 3.6e-29 131.3 110 61.8
Eucgr.K03419 Eucalyptus grandis HOM05D001970 ORTHO05D004069 4.7e-29 131.0 108 63.9
Eucgr.B03989 Eucalyptus grandis HOM05D001970 ORTHO05D004069 2.6e-27 125.2 105 60.0
Eucgr.B02214 Eucalyptus grandis HOM05D001970 ORTHO05D004069 4.9e-18 94.4 95 47.4
Eucgr.B02212 Eucalyptus grandis HOM05D001970 ORTHO05D004069 2.1e-16 89.0 110 45.5
GSVIVG01034915001 Vitis vinifera HOM05D001970 ORTHO05D004069 3.5e-16 88.2 108 42.6
Duzib151G0565 Durio zibethinus HOM05D001970 ORTHO05D004069 4.6e-16 87.8 105 43.8
GSVIVG01034936001 Vitis vinifera HOM05D001970 ORTHO05D004069 4.6e-16 87.8 108 42.6
Eucgr.B02213 Eucalyptus grandis HOM05D001970 ORTHO05D004069 6.0e-16 87.4 91 48.4
Cfa015695 Carpinus fangiana HOM05D001970 ORTHO05D004069 1.7e-15 85.9 105 43.8
Eucgr.B02218 Eucalyptus grandis HOM05D001970 ORTHO05D004069 1.7e-15 85.9 110 43.6
Eucgr.B02219 Eucalyptus grandis HOM05D001970 ORTHO05D004069 3.9e-15 84.7 110 40.0
PGR031G3476 Punica granatum HOM05D001970 ORTHO05D004069 6.6e-15 84.0 105 44.8
Eucgr.B02215 Eucalyptus grandis HOM05D001970 ORTHO05D004069 8.7e-15 83.6 110 40.9
Dinv44243 Davidia involucrata HOM05D001970 ORTHO05D004069 1.1e-14 83.2 105 41.9
Sc19g0000220 Simmondsia chinensis HOM05D001970 ORTHO05D004069 1.5e-14 82.8 110 39.1
Ciclev10006242m.g Citrus clementina HOM05D001970 ORTHO05D004069 3.3e-14 81.6 105 40.0
Haze_00827 Corylus avellana HOM05D001970 ORTHO05D004069 3.3e-14 81.6 100 44.0
Thecc.04G307800 Theobroma cacao HOM05D001970 ORTHO05D004069 3.3e-14 81.6 104 41.3
Gohir.A10G069000 Gossypium hirsutum HOM05D001970 ORTHO05D004069 5.6e-14 80.9 105 40.0
Gohir.D10G082400 Gossypium hirsutum HOM05D001970 ORTHO05D004069 5.6e-14 80.9 105 40.0
Gorai.011G089300 Gossypium raimondii HOM05D001970 ORTHO05D004069 5.6e-14 80.9 105 40.0
Sabra10G0028300 Salix brachista HOM05D001970 ORTHO05D004069 5.6e-14 80.9 107 41.1
CSS0036297 Camellia sinensis var. sinensis HOM05D001970 ORTHO05D004069 7.3e-14 80.5 88 45.5
Cpa.g.sc146.67 Carica papaya HOM05D001970 ORTHO05D004069 7.3e-14 80.5 105 42.9
Nn3g21834 Nelumbo nucifera HOM05D001970 ORTHO05D004069 7.3e-14 80.5 105 41.0
Thecc.05G289900 Theobroma cacao HOM05D001970 ORTHO05D004069 9.6e-14 80.1 105 41.0
CSS0044499 Camellia sinensis var. sinensis HOM05D001970 ORTHO05D004069 1.2e-13 79.7 102 40.2
Cc03_g00440 Coffea canephora HOM05D001970 ORTHO05D004069 1.2e-13 79.7 108 38.9
Glyma.04G082200 Glycine max HOM05D001970 ORTHO05D004069 1.2e-13 79.7 105 41.0
Manes.11G051025 Manihot esculenta HOM05D001970 ORTHO05D004069 1.2e-13 79.7 105 41.0
THA.LOC104820283 Tarenaya hassleriana HOM05D001970 ORTHO05D004069 1.2e-13 79.7 108 38.0
Cfa015694 Carpinus fangiana HOM05D001970 ORTHO05D004069 1.6e-13 79.3 105 41.0
QL04p008488 Quercus lobata HOM05D001970 ORTHO05D004069 1.6e-13 79.3 105 38.1
Glyma.06G083900 Glycine max HOM05D001970 ORTHO05D004069 2.1e-13 79.0 105 40.0
Atru.chr4.3101 Acer truncatum HOM05D001970 ORTHO05D004069 2.8e-13 78.6 105 39.0
Atru.chr4.3100 Acer truncatum HOM05D001970 ORTHO05D004069 3.6e-13 78.2 105 37.1
COL.COLO4_34553 Corchorus olitorius HOM05D001970 ORTHO05D004069 3.6e-13 78.2 105 40.0
MD13G1147600 Malus domestica HOM05D001970 ORTHO05D004069 3.6e-13 78.2 110 39.1
Aqoxy5G02736 Aquilegia oxysepala HOM05D001970 ORTHO05D004069 4.7e-13 77.8 105 39.0
MBI19_g32692_MAGBIO Magnolia biondii HOM05D003039 ORTHO05D009478 4.7e-13 77.8 105 41.0
Hund21091 Selenicereus undatus HOM05D001970 ORTHO05D004069 4.7e-13 77.8 108 38.0
CANSAT78G2049 Cannabis sativa HOM05D001970 ORTHO05D004069 6.2e-13 77.4 105 38.1
Aa31LG8G4180 Aethionema arabicum HOM05D000747 ORTHO05D004807 8.1e-13 77.0 105 37.1
ATR0693G141 Amborella trichopoda HOM05D001970 ORTHO05D004069 8.1e-13 77.0 105 37.1
arahy.Tifrunner.gnm1.ann1.KB2WLH Arachis hypogaea HOM05D001970 ORTHO05D004069 8.1e-13 77.0 110 36.4
arahy.Tifrunner.gnm1.ann1.WPV56H Arachis hypogaea HOM05D001970 ORTHO05D004069 8.1e-13 77.0 110 36.4
Lj4g0017975 Lotus japonicus HOM05D001970 ORTHO05D004069 1.1e-12 76.6 100 42.0
Manes.04G118100 Manihot esculenta HOM05D001970 ORTHO05D004069 1.1e-12 76.6 105 39.0
TAR362G0012 Trochodendron aralioides HOM05D001970 ORTHO05D004069 1.1e-12 76.6 105 37.1
CSS0034239 Camellia sinensis var. sinensis HOM05D001970 ORTHO05D004069 1.8e-12 75.9 102 39.2
Potri.010G037500 Populus trichocarpa HOM05D001970 ORTHO05D004069 1.8e-12 75.9 105 39.0
Sed0005247 Sechium edule HOM05D001970 ORTHO05D004069 1.8e-12 75.9 110 37.3
TWI73G0733 Tripterygium wilfordii HOM05D001970 ORTHO05D004069 1.8e-12 75.9 105 38.1
AUR62028155 Chenopodium quinoa HOM05D001970 ORTHO05D004069 2.4e-12 75.5 105 37.1
FAN07G1061 Fragaria x ananassa HOM05D001970 ORTHO05D004069 3.1e-12 75.1 105 36.2
HPP92_015245 Vanilla planifolia HOM05D001970 ORTHO05D004069 3.1e-12 75.1 105 35.2
CARHR092480 Cardamine hirsuta HOM05D001970 ORTHO05D004069 9.0e-12 73.6 106 36.8
Prupe.1G111200 Prunus persica HOM05D001970 ORTHO05D004069 9.0e-12 73.6 105 36.2
SEGI_17677 Sequoiadendron giganteum HOM05D001970 ORTHO05D004069 9.0e-12 73.6 105 37.1
BraA01t03767Z Brassica rapa HOM05D001970 ORTHO05D004069 1.2e-11 73.2 97 36.1
Phvul.009G108000 Phaseolus vulgaris HOM05D001970 ORTHO05D004069 1.2e-11 73.2 105 38.1
Sp3g15420 Schrenkiella parvula HOM05D001970 ORTHO05D004069 1.2e-11 73.2 105 38.1
SEGI_08307 Sequoiadendron giganteum HOM05D001970 ORTHO05D004069 1.2e-11 73.2 105 38.1
CiPaw.02G071900 Carya illinoinensis HOM05D001970 ORTHO05D004069 1.5e-11 72.8 105 36.2
FvH4_4g20800 Fragaria vesca HOM05D001970 ORTHO05D004069 1.5e-11 72.8 105 34.3
Lalb_Chr07g0181871 Lupinus albus HOM05D001970 ORTHO05D004069 1.5e-11 72.8 108 36.1
Potri.010G037200 Populus trichocarpa HOM05D001970 ORTHO05D004069 1.5e-11 72.8 105 38.1
SGA_v2.0_scaffold19G08903 Striga asiatica HOM05D001970 ORTHO05D004069 1.5e-11 72.8 105 36.2
CiPaw.01G133200 Carya illinoinensis HOM05D001970 ORTHO05D004069 2.0e-11 72.4 105 36.2
Eucgr.B02216 Eucalyptus grandis HOM05D001970 ORTHO05D004069 2.0e-11 72.4 105 37.1
RcHm_v2.0_Chr1g0339351 Rosa chinensis HOM05D001970 ORTHO05D004069 2.0e-11 72.4 105 37.1
RcHm_v2.0_Chr4g0426271 Rosa chinensis HOM05D001970 ORTHO05D004069 2.0e-11 72.4 105 36.2
Ah.04g157230 Amaranthus hybridus HOM05D001970 ORTHO05D004069 2.6e-11 72.0 105 38.1
CAN.G305.52 Capsicum annuum HOM05D001970 ORTHO05D004069 2.6e-11 72.0 99 37.4
VMungo1309G1592 Vigna mungo HOM05D001970 ORTHO05D004069 3.4e-11 71.6 105 37.1
BcaB04g20854 Brassica carinata HOM05D001970 ORTHO05D004069 5.8e-11 70.9 105 35.2
MELO3C006735.2 Cucumis melo HOM05D001970 ORTHO05D004069 5.8e-11 70.9 105 36.2
Lj4g0011707 Lotus japonicus HOM05D001970 ORTHO05D004069 5.8e-11 70.9 105 33.3
PGR031G1418 Punica granatum HOM05D001970 ORTHO05D004069 5.8e-11 70.9 105 35.2
CsaV3_3G015370 Cucumis sativus L. HOM05D001970 ORTHO05D004069 7.6e-11 70.5 105 35.2
SalBow5G5314 Salvia bowleyana HOM05D001970 ORTHO05D004069 7.6e-11 70.5 105 35.2
AUR62005911 Chenopodium quinoa HOM05D001970 ORTHO05D004069 9.9e-11 70.1 103 34.0
BraA01t03770Z Brassica rapa HOM05D001970 ORTHO05D004069 1.3e-10 69.7 105 34.3
ClCG05G006740 Citrullus lanatus HOM05D001970 ORTHO05D004069 1.3e-10 69.7 110 34.5
Haze_03182 Corylus avellana HOM05D001970 ORTHO05D004069 1.3e-10 69.7 103 35.9
Os01g0516600 Oryza sativa ssp. japonica HOM05D001970 ORTHO05D004069 1.3e-10 69.7 100 35.0
Peaxi162Scf00164g00521 Petunia axillaris HOM05D001970 ORTHO05D004069 1.3e-10 69.7 99 37.4
Sed0006681 Sechium edule HOM05D001970 ORTHO05D004069 1.3e-10 69.7 105 37.1
EL10Ac3g05094 Beta vulgaris HOM05D001970 ORTHO05D004069 1.7e-10 69.3 105 36.2
Manes.03G208900 Manihot esculenta HOM05D001970 ORTHO05D004069 1.7e-10 69.3 108 32.4
MD16G1147500 Malus domestica HOM05D001970 ORTHO05D004069 2.2e-10 68.9 126 31.7
PGSC0003DMG400027205 Solanum tuberosum HOM05D001970 ORTHO05D004069 2.2e-10 68.9 99 34.3
HPP92_015244 Vanilla planifolia HOM05D001970 ORTHO05D004069 2.2e-10 68.9 97 37.1
AT3G17210 Arabidopsis thaliana HOM05D001970 ORTHO05D004069 2.9e-10 68.6 105 35.2
Hma1.2p1_2065F.1_g313010 Hydrangea macrophylla HOM05D001970 ORTHO05D004069 2.9e-10 68.6 100 36.0
TPR.G12625 Trifolium pratense HOM05D001970 ORTHO05D004069 3.8e-10 68.2 105 37.1
GSVIVG01017635001 Vitis vinifera HOM05D001970 ORTHO05D004069 3.8e-10 68.2 56 51.8
GSVIVG01034937001 Vitis vinifera HOM05D001970 ORTHO05D004069 3.8e-10 68.2 56 51.8
BcaC09g48682 Brassica carinata HOM05D001970 ORTHO05D004069 4.9e-10 67.8 105 34.3
C01p46990 Brassica napus HOM05D001970 ORTHO05D004069 4.9e-10 67.8 105 34.3
BolC1t04667H Brassica oleracea HOM05D001970 ORTHO05D004069 4.9e-10 67.8 105 34.3
CiPaw.14G000900 Carya illinoinensis HOM05D001970 ORTHO05D004069 4.9e-10 67.8 104 38.5
Potri.010G150900 Populus trichocarpa HOM05D001970 ORTHO05D004069 4.9e-10 67.8 105 33.3
SalBow5G1240 Salvia bowleyana HOM05D001970 ORTHO05D004069 4.9e-10 67.8 105 32.4
unitig_26.g10618 Utricularia gibba HOM05D001970 ORTHO05D004069 4.9e-10 67.8 103 34.0
BcaC09g48679 Brassica carinata HOM05D001970 ORTHO05D004069 6.4e-10 67.4 105 33.3
Rhsim04G0243300 Rhododendron simsii HOM05D001970 ORTHO05D004069 6.4e-10 67.4 108 38.0
Lsat_1_v5_gn_4_46140 Lactuca sativa HOM05D001970 ORTHO05D004069 8.4e-10 67.0 100 36.0
VMungo1309G0293 Vigna mungo HOM05D001970 ORTHO05D004069 8.4e-10 67.0 126 32.5
Actinidia31583 Actinidia chinensis HOM05D001970 ORTHO05D004069 1.1e-09 66.6 101 38.6
A01p37110 Brassica napus HOM05D001970 ORTHO05D004069 1.1e-09 66.6 105 33.3
C01p47010 Brassica napus HOM05D001970 ORTHO05D004069 1.1e-09 66.6 105 33.3
BolC1t04669H Brassica oleracea HOM05D001970 ORTHO05D004069 1.1e-09 66.6 105 33.3
Migut.N00021 Erythranthe guttata HOM05D001970 ORTHO05D004069 1.1e-09 66.6 105 31.4
GSVIVG01034933001 Vitis vinifera HOM05D001970 ORTHO05D004069 1.1e-09 66.6 56 51.8
C01p46960 Brassica napus HOM05D001970 ORTHO05D004069 1.4e-09 66.2 105 34.3
Sopen05g031820 Solanum pennellii HOM05D001970 ORTHO05D004069 1.4e-09 66.2 99 33.3
Ca_09315_v3 Cicer arietinum L. HOM05D001970 ORTHO05D004069 1.9e-09 65.9 105 34.3
Nitab4.5_0000745g0210 Nicotiana tabacum HOM05D001970 ORTHO05D004069 1.9e-09 65.9 106 35.8
Solyc05g053310.3 Solanum lycopersicum HOM05D001970 ORTHO05D004069 1.9e-09 65.9 99 32.3
Zm00001eb357750 Zea mays HOM05D001970 ORTHO05D004069 1.9e-09 65.9 100 35.0
ClCG01G008350 Citrullus lanatus HOM05D001970 ORTHO05D004069 2.4e-09 65.5 102 34.3
Nitab4.5_0008312g0070 Nicotiana tabacum HOM05D001970 ORTHO05D004069 2.4e-09 65.5 99 35.4
Potri.010G151000 Populus trichocarpa HOM05D001970 ORTHO05D004069 2.4e-09 65.5 104 32.7
Carub.0003s1697 Capsella rubella HOM05D001970 ORTHO05D004069 4.2e-09 64.7 101 33.7
Psat5g255320 Pisum sativum HOM05D001970 ORTHO05D004069 4.2e-09 64.7 105 34.3
Lalb_Chr13g0298751 Lupinus albus HOM05D001970 ORTHO05D004069 5.4e-09 64.3 105 32.4
QL06p013371 Quercus lobata HOM05D001970 ORTHO05D004069 5.4e-09 64.3 105 33.3
vmacro07978 Vaccinium macrocarpon HOM05D001970 ORTHO05D004069 7.1e-09 63.9 54 51.9
ECA234G1379 Erigeron canadensis HOM05D001970 ORTHO05D004069 9.3e-09 63.5 100 36.0
AL3G30240 Arabidopsis lyrata HOM05D001970 ORTHO05D004069 1.2e-08 63.2 106 35.8
ClCG05G006690 Citrullus lanatus HOM05D001970 ORTHO05D004069 1.2e-08 63.2 103 32.0
Actinidia18483 Actinidia chinensis HOM05D001970 ORTHO05D004069 1.6e-08 62.8 101 34.7
MBI02_g25246_MAGBIO Magnolia biondii HOM05D001970 ORTHO05D004069 1.6e-08 62.8 104 35.6
Psat4g019000 Pisum sativum HOM05D001970 ORTHO05D004069 1.6e-08 62.8 105 33.3
HanXRQChr16g0519591 Helianthus annuus HOM05D001970 ORTHO05D004069 2.1e-08 62.4 100 34.0
Oeu052154.2 Olea europaea HOM05D001970 ORTHO05D004069 2.1e-08 62.4 53 49.1
MSTRG.21751 Avicennia marina HOM05D001970 ORTHO05D004069 4.6e-08 61.2 104 31.7
AUR62005910 Chenopodium quinoa HOM05D001970 ORTHO05D004069 4.6e-08 61.2 53 49.1
MBI02_g25818_MAGBIO Magnolia biondii HOM05D001970 ORTHO05D004069 4.6e-08 61.2 110 34.5
Atru.chr4.3099 Acer truncatum HOM05D001970 ORTHO05D004069 6.0e-08 60.8 53 45.3
Glyma.06G084000 Glycine max HOM05D001970 ORTHO05D004069 6.0e-08 60.8 46 58.7
Medtr4g124920 Medicago truncatula HOM05D001970 ORTHO05D004069 7.8e-08 60.5 98 33.7
Migut.N00022 Erythranthe guttata HOM05D001970 ORTHO05D004069 1.7e-07 59.3 102 27.5
Prupe.1G111100 Prunus persica HOM05D001970 ORTHO05D004069 2.3e-07 58.9 96 33.3
PSO729G0118 Papaver somniferum HOM05D001970 ORTHO05D004069 6.6e-07 57.4 97 29.9
TPR.G12678 Trifolium pratense HOM05D001970 ORTHO05D004069 1.9e-06 55.8 49 40.8
Thhalv10021839m.g Eutrema salsugineum HOM05D001970 ORTHO05D004069 3.3e-06 55.1 86 33.7
SalBow2G2990 Salvia bowleyana HOM05D001970 ORTHO05D004069 3.3e-06 55.1 104 31.7
SGA_v2.0_scaffold227G43218 Striga asiatica HOM05D001970 ORTHO05D004069 3.3e-06 55.1 97 30.9
SMO147G0378 Selaginella moellendorffii HOM05D001970 ORTHO05D004069 7.3e-06 53.9 100 30.0
A01p37060 Brassica napus HOM05D001970 ORTHO05D004069 9.6e-06 53.5 53 41.5
CiPaw.13G006300 Carya illinoinensis HOM05D001970 ORTHO05D004069 9.6e-06 53.5 46 54.3


User provided reference genes

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