Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03414 Eucalyptus grandis HOM05D000300 ORTHO05D000383 1.6e-50 202.6 110 100.0
Eucgr.K03412 Eucalyptus grandis HOM05D000300 ORTHO05D000383 3.3e-24 115.2 61 93.4
PGR044G0556 Punica granatum HOM05D000300 ORTHO05D000383 1.4e-19 99.8 82 65.9
Rhsim01G0274900 Rhododendron simsii HOM05D000300 ORTHO05D000383 2.4e-19 99.0 88 63.6
Lsat_1_v5_gn_9_3820 Lactuca sativa HOM05D000300 ORTHO05D000383 4.1e-19 98.2 96 63.5
Potri.005G208900 Populus trichocarpa HOM05D000300 ORTHO05D000383 4.1e-19 98.2 84 67.9
Dinv32940 Davidia involucrata HOM05D000300 ORTHO05D000383 1.2e-18 96.7 79 67.1
Sabra05G0159000 Salix brachista HOM05D000300 ORTHO05D000383 1.2e-18 96.7 92 65.2
AT4G02820 Arabidopsis thaliana HOM05D000300 ORTHO05D000383 2.1e-18 95.9 112 58.0
FAN27G2457 Fragaria x ananassa HOM05D000300 ORTHO05D000383 2.1e-18 95.9 90 61.1
CAN.G1058.26 Capsicum annuum HOM05D000300 ORTHO05D000383 2.7e-18 95.5 58 81.0
CARHR251190 Cardamine hirsuta HOM05D000300 ORTHO05D000383 4.6e-18 94.7 57 82.5
Cc01_g19520 Coffea canephora HOM05D000300 ORTHO05D000383 6.0e-18 94.4 103 59.2
Ciclev10019771m.g Citrus clementina HOM05D000300 ORTHO05D000383 7.8e-18 94.0 74 68.9
Atru.chr5.1431 Acer truncatum HOM05D000300 ORTHO05D000383 1.0e-17 93.6 55 81.8
Actinidia21111 Actinidia chinensis HOM05D000300 ORTHO05D000383 1.0e-17 93.6 57 78.9
AL6G50110 Arabidopsis lyrata HOM05D000300 ORTHO05D000383 1.7e-17 92.8 108 55.6
Lj1A46T43 Lonicera japonica HOM05D000300 ORTHO05D000383 1.7e-17 92.8 55 83.6
Nitab4.5_0000312g0020 Nicotiana tabacum HOM05D000300 ORTHO05D000383 1.7e-17 92.8 57 80.7
Nitab4.5_0005960g0030 Nicotiana tabacum HOM05D000300 ORTHO05D000383 1.7e-17 92.8 57 80.7
QL12p021957 Quercus lobata HOM05D000300 ORTHO05D000383 1.7e-17 92.8 57 77.2
GSVIVG01024495001 Vitis vinifera HOM05D000300 ORTHO05D000383 1.7e-17 92.8 55 81.8
ECA247G2661 Erigeron canadensis HOM05D005331 ORTHO05D007596 2.3e-17 92.4 73 71.2
MSTRG.18231 Avicennia marina HOM05D000300 ORTHO05D000383 3.0e-17 92.0 97 57.7
TAR365G0610 Trochodendron aralioides HOM05D000300 ORTHO05D000383 3.0e-17 92.0 79 65.8
Thhalv10028573m.g Eutrema salsugineum HOM05D000300 ORTHO05D000383 3.9e-17 91.7 108 55.6
FvH4_2g23640 Fragaria vesca HOM05D000300 ORTHO05D000383 3.9e-17 91.7 90 58.9
FAN24G0464 Fragaria x ananassa HOM05D000300 ORTHO05D000383 3.9e-17 91.7 90 58.9
PGSC0003DMG400030062 Solanum tuberosum HOM05D000300 ORTHO05D000383 3.9e-17 91.7 65 69.2
BcaB05g23665 Brassica carinata HOM05D000300 ORTHO05D000383 5.1e-17 91.3 57 78.9
Cfa006133 Carpinus fangiana HOM05D000300 ORTHO05D000383 5.1e-17 91.3 55 80.0
FAN15G1317 Fragaria x ananassa HOM05D000300 ORTHO05D000383 5.1e-17 91.3 90 58.9
FAN20G1568 Fragaria x ananassa HOM05D000300 ORTHO05D000383 5.1e-17 91.3 90 58.9
RcHm_v2.0_Chr6g0291111 Rosa chinensis HOM05D000300 ORTHO05D000383 5.1e-17 91.3 90 60.0
Gohir.D12G004800 Gossypium hirsutum HOM05D000300 ORTHO05D000383 6.6e-17 90.9 86 58.1
PGSC0003DMG400004814 Solanum tuberosum HOM05D000300 ORTHO05D000383 6.6e-17 90.9 65 69.2
Gorai.008G004700 Gossypium raimondii HOM05D000300 ORTHO05D000383 8.7e-17 90.5 86 58.1
MD03G1265900 Malus domestica HOM05D000300 ORTHO05D000383 8.7e-17 90.5 89 61.8
EL10Ac2g04512 Beta vulgaris HOM05D000300 ORTHO05D000383 1.1e-16 90.1 59 74.6
MELO3C015840.2 Cucumis melo HOM05D000300 ORTHO05D000383 1.1e-16 90.1 98 54.1
Nn1g02212 Nelumbo nucifera HOM05D000300 ORTHO05D000383 1.1e-16 90.1 79 60.8
Peaxi162Scf00174g00144 Petunia axillaris HOM05D000300 ORTHO05D000383 1.1e-16 90.1 55 80.0
SalBow4G0452 Salvia bowleyana HOM05D000300 ORTHO05D000383 1.1e-16 90.1 97 59.8
CSS0013311 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 1.5e-16 89.7 104 56.7
CiPaw.08G105100 Carya illinoinensis HOM05D000300 ORTHO05D000383 1.5e-16 89.7 90 58.9
AUR62023211 Chenopodium quinoa HOM05D000300 ORTHO05D000383 1.5e-16 89.7 55 78.2
unitig_0.g113 Utricularia gibba HOM05D000300 ORTHO05D000383 1.5e-16 89.7 107 50.5
A02p24990 Brassica napus HOM05D000300 ORTHO05D000383 1.9e-16 89.4 57 77.2
BraA02t07488Z Brassica rapa HOM05D000300 ORTHO05D000383 1.9e-16 89.4 57 77.2
Sp6g02850 Schrenkiella parvula HOM05D000300 ORTHO05D000383 1.9e-16 89.4 106 53.8
Aqoxy2G03317 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 2.5e-16 89.0 57 75.4
BcaC03g16181 Brassica carinata HOM05D000300 ORTHO05D000383 2.5e-16 89.0 69 68.1
BolC2t09970H Brassica oleracea HOM05D000300 ORTHO05D000383 2.5e-16 89.0 69 68.1
Cpa.g.sc2747.1 Carica papaya HOM05D000300 ORTHO05D000383 2.5e-16 89.0 103 56.3
Haze_04721 Corylus avellana HOM05D000300 ORTHO05D000383 2.5e-16 89.0 55 78.2
Oeu015967.1 Olea europaea HOM05D000300 ORTHO05D000383 2.5e-16 89.0 99 58.6
Prupe.8G241600 Prunus persica HOM05D000300 ORTHO05D000383 2.5e-16 89.0 92 56.5
SGA_v2.0_scaffold11G05807 Striga asiatica HOM05D000300 ORTHO05D000383 2.5e-16 89.0 57 77.2
Aa31LG5G2420 Aethionema arabicum HOM05D000300 ORTHO05D000383 4.3e-16 88.2 115 55.7
DCAR_012472 Daucus carota HOM05D000300 ORTHO05D000383 4.3e-16 88.2 55 76.4
Gohir.A12G005300 Gossypium hirsutum HOM05D000300 ORTHO05D000383 4.3e-16 88.2 86 58.1
TWI59G0433 Tripterygium wilfordii HOM05D000300 ORTHO05D000383 4.3e-16 88.2 90 58.9
C02p39570 Brassica napus HOM05D000300 ORTHO05D000383 5.6e-16 87.8 55 78.2
Migut.D00292 Erythranthe guttata HOM05D000300 ORTHO05D000383 5.6e-16 87.8 100 52.0
Gohir.D08G076300 Gossypium hirsutum HOM05D000300 ORTHO05D000383 5.6e-16 87.8 57 77.2
Gorai.004G080600 Gossypium raimondii HOM05D000300 ORTHO05D000383 5.6e-16 87.8 57 77.2
Actinidia24890 Actinidia chinensis HOM05D000300 ORTHO05D000383 9.6e-16 87.0 117 52.1
Gohir.A08G067800 Gossypium hirsutum HOM05D000300 ORTHO05D000383 9.6e-16 87.0 57 75.4
Sed0025905 Sechium edule HOM05D000300 ORTHO05D000383 9.6e-16 87.0 103 54.4
Os12g0527900 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D000383 1.2e-15 86.7 58 67.2
Sed0020529 Sechium edule HOM05D000300 ORTHO05D000383 1.2e-15 86.7 103 53.4
Carub.0006s3423 Capsella rubella HOM05D000300 ORTHO05D000383 1.6e-15 86.3 114 52.6
Lalb_Chr06g0163031 Lupinus albus HOM05D000300 ORTHO05D000383 1.6e-15 86.3 58 77.6
Ah.16g101420 Amaranthus hybridus HOM05D000300 ORTHO05D000383 2.1e-15 85.9 107 53.3
ClCG09G007000 Citrullus lanatus HOM05D000300 ORTHO05D000383 2.1e-15 85.9 97 55.7
Manes.01G208100 Manihot esculenta HOM05D000300 ORTHO05D000383 2.1e-15 85.9 90 58.9
MBI04_g44357_MAGBIO Magnolia biondii HOM05D000300 ORTHO05D000383 2.8e-15 85.5 67 64.2
Manes.05G075800 Manihot esculenta HOM05D000300 ORTHO05D000383 2.8e-15 85.5 90 57.8
Solyc06g005140.3 Solanum lycopersicum HOM05D000300 ORTHO05D000383 2.8e-15 85.5 104 51.9
Sopen06g001130 Solanum pennellii HOM05D000300 ORTHO05D000383 2.8e-15 85.5 104 51.9
CsaV3_7G028160 Cucumis sativus L. HOM05D000300 ORTHO05D000383 3.6e-15 85.1 98 56.1
PGSC0003DMG400041837 Solanum tuberosum HOM05D000300 ORTHO05D000383 4.7e-15 84.7 58 72.4
THA.LOC104825997 Tarenaya hassleriana HOM05D000300 ORTHO05D000383 4.7e-15 84.7 106 55.7
CDE06G1202 Ceratophyllum demersum HOM05D000300 ORTHO05D000383 8.1e-15 84.0 57 68.4
VMungo0720G1460 Vigna mungo HOM05D000300 ORTHO05D000383 8.1e-15 84.0 105 56.2
Duzib133G0746 Durio zibethinus HOM05D000300 ORTHO05D000383 1.1e-14 83.6 104 54.8
Sc11g0008540 Simmondsia chinensis HOM05D000300 ORTHO05D000383 1.8e-14 82.8 93 54.8
Ca_09760_v3 Cicer arietinum L. HOM05D000300 ORTHO05D000383 3.1e-14 82.0 58 70.7
Zm00001eb410850 Zea mays HOM05D000300 ORTHO05D000383 3.1e-14 82.0 87 55.2
COL.COLO4_09102 Corchorus olitorius HOM05D000300 ORTHO05D000383 4.0e-14 81.6 88 56.8
Hund13694 Selenicereus undatus HOM05D000300 ORTHO05D000383 5.2e-14 81.3 104 50.0
Psat6g060400 Pisum sativum HOM05D000300 ORTHO05D000383 9.0e-14 80.5 56 71.4
Medtr1g072300 Medicago truncatula HOM05D000300 ORTHO05D000383 1.5e-13 79.7 105 49.5
Glyma.10G026151 Glycine max HOM05D000300 ORTHO05D000383 2.0e-13 79.3 105 56.2
PSO170G2960 Papaver somniferum HOM05D000300 ORTHO05D000383 3.4e-13 78.6 55 72.7
TPR.G9130 Trifolium pratense HOM05D000300 ORTHO05D000383 3.4e-13 78.6 105 54.3
Phvul.007G171700 Phaseolus vulgaris HOM05D000300 ORTHO05D000383 7.6e-13 77.4 97 52.6
PSO302G0202 Papaver somniferum HOM05D000300 ORTHO05D000383 9.9e-13 77.0 78 57.7
arahy.Tifrunner.gnm1.ann1.QTR7F5 Arachis hypogaea HOM05D000300 ORTHO05D000383 3.8e-12 75.1 56 71.4
Zm00001eb225600 Zea mays HOM05D000300 ORTHO05D000383 1.6e-10 69.7 100 42.0
AUR62023257 Chenopodium quinoa HOM05D000300 ORTHO05D000383 5.6e-08 61.2 104 44.2
SHI14611 Sapria himalayana HOM05D000300 ORTHO05D000383 7.3e-08 60.8 46 63.0
vmacro14921 Vaccinium macrocarpon HOM05D000300 ORTHO05D000383 1.3e-07 60.1 59 61.0
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 1.3e-07 60.1 48 56.2
Rhsim06G0075400 Rhododendron simsii HOM05D000300 ORTHO05D000383 2.1e-07 59.3 78 44.9
CDE10G1370 Ceratophyllum demersum HOM05D000300 ORTHO05D000383 1.1e-06 57.0 56 53.6
CDE05G2045 Ceratophyllum demersum HOM05D000300 ORTHO05D009414 1.4e-06 56.6 63 47.6
Hund06157 Selenicereus undatus HOM05D000300 ORTHO05D009414 2.4e-06 55.8 64 50.0
Aqoxy6G00676 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 4.0e-06 55.1 67 44.8
ATR0022G020 Amborella trichopoda HOM05D000300 ORTHO05D009414 5.3e-06 54.7 55 49.1


User provided reference genes

Program Settings