Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 4.9e-137 491.1 246 100.0
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 1.5e-101 373.2 230 78.3
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 6.3e-100 367.9 242 75.6
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 1.8e-99 366.3 251 75.3
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 4.1e-99 365.2 252 74.2
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 1.2e-98 363.6 241 76.3
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 3.4e-98 362.1 251 71.7
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 5.9e-98 361.3 242 75.2
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 7.7e-98 360.9 241 75.9
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 5.0e-97 358.2 236 75.0
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 6.5e-97 357.8 242 74.4
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 2.5e-96 355.9 255 71.0
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 2.5e-96 355.9 241 74.7
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 4.2e-96 355.1 245 72.2
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 9.4e-96 354.0 239 74.1
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 6.1e-95 351.3 251 73.3
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 3.9e-94 348.6 251 70.5
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 3.9e-94 348.6 254 71.7
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 5.1e-94 348.2 246 71.5
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 1.3e-92 343.6 246 69.5
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 2.8e-92 342.4 251 70.5
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 3.7e-92 342.0 242 69.4
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 3.7e-92 342.0 234 71.8
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 3.7e-92 342.0 238 71.0
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 1.1e-91 340.5 239 70.7
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 2.4e-91 339.3 242 69.8
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 7.0e-91 337.8 250 68.4
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 5.9e-90 334.7 251 67.7
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.0e-89 334.0 251 69.7
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 1.0e-89 334.0 242 69.8
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 2.9e-89 332.4 242 69.0
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 5.0e-89 331.6 242 69.4
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 6.5e-89 331.3 243 69.5
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 1.5e-88 330.1 242 69.0
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 1.5e-88 330.1 243 69.1
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 1.9e-88 329.7 230 70.0
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 3.2e-88 328.9 243 67.1
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 3.2e-88 328.9 239 67.4
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 4.2e-88 328.6 230 70.4
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 4.2e-88 328.6 243 67.9
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 4.2e-88 328.6 247 67.2
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 7.2e-88 327.8 247 68.4
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 7.2e-88 327.8 247 68.4
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 7.2e-88 327.8 239 69.0
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 7.2e-88 327.8 242 67.8
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 1.6e-87 326.6 243 68.3
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 2.1e-87 326.2 242 68.6
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 2.7e-87 325.9 252 66.7
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 8.0e-87 324.3 240 69.2
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 8.0e-87 324.3 251 66.5
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 1.0e-86 323.9 239 66.9
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 1.4e-86 323.6 249 67.1
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 3.0e-86 322.4 227 70.9
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 4.0e-86 322.0 244 65.6
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 6.7e-86 321.2 236 68.2
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 6.7e-86 321.2 249 66.3
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 8.8e-86 320.9 245 66.5
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 1.5e-85 320.1 227 69.6
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 2.0e-85 319.7 246 64.2
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 4.4e-85 318.5 244 66.4
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 5.7e-85 318.2 246 63.0
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 5.7e-85 318.2 223 70.0
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 7.5e-85 317.8 240 67.9
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 7.5e-85 317.8 246 63.8
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 9.7e-85 317.4 239 66.9
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 1.3e-84 317.0 227 70.0
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 1.7e-84 316.6 239 64.4
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 4.8e-84 315.1 226 68.1
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 1.8e-83 313.2 238 65.1
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 5.3e-83 311.6 244 64.3
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 2.0e-82 309.7 251 63.7
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 1.3e-81 307.0 252 63.9
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 1.3e-81 307.0 237 66.7
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 1.3e-81 307.0 234 65.8
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 2.9e-81 305.8 251 62.5
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 6.5e-81 304.7 243 60.9
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 1.1e-80 303.9 253 63.2
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 5.5e-80 301.6 233 65.2
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 7.2e-80 301.2 315 54.6
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 3.6e-79 298.9 246 58.9
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 6.1e-79 298.1 187 78.1
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 4.0e-78 295.4 221 62.9
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 5.2e-78 295.0 254 58.3
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 5.7e-77 291.6 251 64.1
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 9.8e-77 290.8 202 67.8
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 6.3e-76 288.1 303 52.5
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 8.3e-76 287.7 268 56.7
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 3.1e-75 285.8 191 75.9
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 7.0e-75 284.6 292 53.8
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 2.2e-73 279.6 212 62.7
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 5.0e-73 278.5 187 71.1
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 3.6e-71 272.3 189 70.9
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 3.6e-71 272.3 200 69.5
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 3.0e-70 269.2 244 57.8
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 3.3e-64 249.2 232 53.9
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 6.1e-63 245.0 245 51.0
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 1.0e-62 244.2 193 60.1
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 1.8e-59 233.4 222 54.1
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 3.9e-57 225.7 226 53.1
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 4.0e-54 215.7 151 68.9
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 4.0e-54 215.7 190 58.9
Sc05g0004910 Simmondsia chinensis HOM05D007231 ORTHO05D009024 1.3e-49 200.7 144 69.4
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 2.5e-40 169.9 120 68.3
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 3.9e-33 146.0 217 39.2
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 8.4e-28 128.3 178 42.7
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 9.6e-24 114.8 207 37.2
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 2.1e-23 113.6 207 36.7
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 1.5e-21 107.5 205 31.2
Cc01_g19320 Coffea canephora HOM05D007231 ORTHO05D009024 5.8e-21 105.5 136 49.3
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 4.9e-20 102.4 205 35.1
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 1.9e-19 100.5 187 35.3
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 1.3e-17 94.4 165 36.4
TPR.G24733 Trifolium pratense HOM05D007231 ORTHO05D009024 2.1e-15 87.0 61 77.0
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 1.1e-14 84.7 84 51.2
CDE02G1070 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 1.9e-11 73.9 132 37.1
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 5.5e-11 72.4 66 56.1
TPR.G17639 Trifolium pratense HOM05D007231 ORTHO05D009024 1.4e-06 57.8 42 59.5
TPR.G23952 Trifolium pratense HOM05D007231 ORTHO05D009024 1.4e-06 57.8 42 59.5
COL.COLO4_09126 Corchorus olitorius HOM05D002055 ORTHO05D002120 9.0e-06 55.1 50 60.0


User provided reference genes

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