Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 3.7e-100 368.2 188 100.0
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 3.4e-69 265.4 180 74.4
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 1.3e-68 263.5 184 70.7
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 6.3e-68 261.2 187 70.6
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 2.4e-67 259.2 184 71.7
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 2.4e-67 259.2 184 71.7
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 4.1e-67 258.5 191 68.6
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 7.0e-67 257.7 180 72.8
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 7.0e-67 257.7 191 68.6
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 9.1e-67 257.3 184 70.1
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 1.6e-66 256.5 184 69.6
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 3.5e-66 255.4 191 68.1
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 3.5e-66 255.4 180 71.7
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 7.7e-66 254.2 178 70.8
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 1.7e-65 253.1 180 71.1
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 1.7e-65 253.1 185 68.6
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 3.8e-65 251.9 184 66.8
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 3.8e-65 251.9 174 71.8
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 3.8e-65 251.9 174 71.3
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 3.8e-65 251.9 181 70.2
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 5.0e-65 251.5 184 67.4
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 6.5e-65 251.1 184 66.8
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 6.5e-65 251.1 180 71.1
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 8.6e-65 250.8 184 67.4
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 1.5e-64 250.0 181 70.2
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.5e-64 250.0 184 67.4
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 5.5e-64 248.1 175 70.3
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 1.2e-63 246.9 188 66.5
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 1.6e-63 246.5 178 69.7
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 2.1e-63 246.1 181 68.0
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 2.1e-63 246.1 168 71.4
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 2.8e-63 245.7 176 69.3
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 5.2e-62 241.5 181 66.9
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 3.4e-61 238.8 181 65.2
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 4.4e-61 238.4 195 62.1
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 7.5e-61 237.7 180 67.2
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 9.8e-61 237.3 181 64.6
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 9.8e-61 237.3 180 66.7
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 2.8e-60 235.7 174 66.7
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 4.9e-60 235.0 181 65.7
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 3.1e-59 232.3 172 68.0
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 7.0e-59 231.1 181 65.2
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 2.0e-58 229.6 180 63.9
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 2.7e-58 229.2 169 68.6
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 3.5e-58 228.8 185 61.6
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 3.5e-58 228.8 161 68.9
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 5.9e-58 228.0 185 61.6
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 5.9e-58 228.0 185 61.6
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 1.0e-57 227.3 174 64.9
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 1.3e-57 226.9 185 61.1
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 1.7e-57 226.5 158 72.2
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 3.8e-57 225.3 175 64.0
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 5.0e-57 224.9 180 61.7
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 6.6e-57 224.6 182 62.6
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 3.3e-56 222.2 179 60.3
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 5.6e-56 221.5 180 62.2
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 1.2e-55 220.3 159 69.8
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 2.1e-55 219.5 181 59.7
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 2.1e-55 219.5 181 59.7
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 3.6e-55 218.8 181 60.8
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 4.7e-55 218.4 175 61.1
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 4.7e-55 218.4 179 60.3
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 1.4e-54 216.9 181 58.6
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 1.4e-54 216.9 167 64.1
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 2.3e-54 216.1 184 58.7
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 2.3e-54 216.1 178 60.7
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 5.2e-54 214.9 178 59.6
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 6.8e-54 214.5 175 59.4
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 6.8e-54 214.5 177 62.7
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 1.5e-53 213.4 173 63.0
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 1.5e-53 213.4 179 59.2
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 2.0e-53 213.0 176 59.1
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 5.7e-53 211.5 170 59.4
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 7.5e-53 211.1 169 60.4
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 9.8e-53 210.7 158 65.8
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 9.8e-53 210.7 176 59.7
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 1.3e-52 210.3 179 60.3
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 1.7e-52 209.9 155 68.4
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 2.2e-52 209.5 156 66.0
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 4.9e-52 208.4 173 61.3
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 1.4e-51 206.8 170 59.4
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 1.4e-51 206.8 170 58.8
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 1.4e-51 206.8 170 58.8
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 1.2e-50 203.8 170 61.2
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 3.9e-49 198.7 159 60.4
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 5.0e-49 198.4 192 57.3
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 5.0e-49 198.4 145 70.3
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 4.3e-48 195.3 192 56.2
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 8.9e-46 187.6 134 67.2
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 2.9e-44 182.6 143 60.8
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 3.2e-43 179.1 129 70.5
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 1.6e-42 176.8 137 65.0
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 6.0e-42 174.9 175 54.3
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 1.0e-41 174.1 191 51.3
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 5.0e-41 171.8 180 48.3
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 2.1e-39 166.4 196 48.0
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 1.1e-38 164.1 130 60.0
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 5.2e-38 161.8 131 61.8
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 8.9e-38 161.0 130 59.2
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 3.4e-37 159.1 123 61.0
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 2.9e-36 156.0 172 50.0
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 4.1e-35 152.1 103 70.9
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 2.1e-31 139.8 103 68.9
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 1.4e-27 127.1 128 53.1
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 2.7e-26 122.9 152 46.1
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 4.6e-26 122.1 175 42.9
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 2.1e-23 113.2 175 39.4
BcaB03g16409 Brassica carinata HOM05D002799 ORTHO05D008889 7.6e-21 104.8 110 53.6
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 4.9e-20 102.1 148 41.9
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 4.6e-18 95.5 155 38.1
C07p06790 Brassica napus HOM05D002799 ORTHO05D008889 1.1e-16 90.9 132 41.7
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 2.1e-15 86.7 155 36.1
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 1.2e-13 80.9 135 34.8
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 8.4e-12 74.7 48 68.8
Zm00001eb177740 Zea mays HOM05D002799 ORTHO05D008889 2.4e-06 56.6 41 61.0


User provided reference genes

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