Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 1.3e-168 596.3 289 100.0
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 9.3e-119 430.6 265 75.8
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 6.0e-118 427.9 254 77.2
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 2.3e-117 426.0 254 77.2
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 3.0e-117 425.6 255 77.3
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 6.6e-117 424.5 275 74.9
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 2.5e-116 422.5 268 73.5
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 9.6e-116 420.6 255 77.3
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 1.3e-115 420.2 254 76.4
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 2.1e-115 419.5 262 75.6
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 2.8e-115 419.1 261 75.9
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 2.8e-115 419.1 268 72.0
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 6.2e-115 417.9 268 73.9
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 1.4e-114 416.8 289 68.5
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 3.1e-114 415.6 254 76.4
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 5.3e-114 414.8 257 77.0
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 5.3e-114 414.8 289 68.2
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 6.9e-114 414.5 268 73.5
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 6.9e-114 414.5 260 76.5
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 2.0e-113 412.9 274 71.2
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 5.8e-113 411.4 269 72.5
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 2.2e-112 409.5 251 76.1
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 8.4e-112 407.5 256 75.0
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 1.9e-111 406.4 256 74.6
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 2.4e-111 406.0 260 73.1
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 1.2e-110 403.7 256 74.2
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 1.2e-110 403.7 260 75.4
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 2.1e-110 402.9 256 73.8
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 2.7e-110 402.5 257 73.5
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 6.0e-110 401.4 279 68.8
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 3.0e-109 399.1 237 78.9
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 3.0e-109 399.1 237 78.9
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 3.0e-109 399.1 254 73.6
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 5.1e-109 398.3 263 69.2
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 1.1e-108 397.1 254 71.7
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 1.5e-108 396.7 283 67.8
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.9e-108 396.4 255 73.3
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 2.5e-108 396.0 268 72.4
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 3.3e-108 395.6 256 71.5
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 3.3e-108 395.6 254 72.0
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 4.3e-108 395.2 265 69.8
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 7.4e-108 394.4 268 70.5
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 9.6e-108 394.0 258 70.9
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.6e-107 393.3 254 71.7
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 2.8e-107 392.5 254 71.3
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 2.8e-107 392.5 255 71.0
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 2.8e-107 392.5 254 71.3
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 4.8e-107 391.7 260 71.2
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 4.8e-107 391.7 262 71.4
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 6.2e-107 391.3 261 72.8
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 1.4e-106 390.2 238 75.6
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 1.8e-106 389.8 254 70.9
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 4.0e-106 388.7 258 69.8
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 9.0e-106 387.5 256 70.3
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 9.0e-106 387.5 252 70.2
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 2.6e-105 386.0 255 69.4
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 5.8e-105 384.8 260 70.4
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.9e-105 384.0 261 70.9
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.9e-105 384.0 261 70.9
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.3e-104 383.6 285 66.3
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 1.7e-104 383.3 255 71.0
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 2.2e-104 382.9 255 69.4
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 2.9e-104 382.5 284 63.4
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 3.8e-104 382.1 256 72.3
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 4.9e-104 381.7 237 74.7
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 4.9e-104 381.7 270 64.8
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.4e-103 380.2 264 68.2
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.6e-102 376.7 233 74.7
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 6.7e-101 371.3 256 69.5
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 1.5e-100 370.2 306 59.8
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 1.9e-100 369.8 260 69.2
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.3e-99 367.1 237 73.8
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 1.3e-99 367.1 255 68.2
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 6.2e-99 364.8 288 61.5
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 6.2e-99 364.8 268 65.7
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 1.4e-98 363.6 266 64.7
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 5.3e-98 361.7 255 67.1
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 9.0e-98 360.9 256 66.0
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 1.2e-97 360.5 255 67.1
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 1.7e-96 356.7 232 74.6
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 1.1e-95 354.0 259 64.5
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.3e-93 347.1 256 67.6
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 1.8e-93 346.7 261 63.2
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 5.1e-93 345.1 261 62.8
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 1.9e-92 343.2 216 74.1
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 5.7e-92 341.7 265 64.9
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 2.2e-91 339.7 256 62.1
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 4.8e-91 338.6 265 64.5
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 4.5e-89 332.0 258 61.6
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 1.0e-88 330.9 255 63.1
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 2.8e-83 312.8 256 62.1
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 2.0e-76 290.0 253 56.5
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 2.4e-74 283.1 259 54.4
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 7.0e-74 281.6 206 66.0
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 1.2e-73 280.8 267 55.1
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 1.5e-73 280.4 269 54.3
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 1.0e-72 277.7 258 53.5
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 2.0e-68 263.5 187 65.8
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 1.8e-66 256.9 158 75.3
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 1.6e-65 253.8 180 65.6
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 3.8e-64 249.2 184 67.4
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 2.5e-63 246.5 211 57.8
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 1.4e-53 214.2 180 59.4
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 1.6e-49 200.7 275 40.4
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 5.7e-44 182.2 198 49.5
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 1.4e-42 177.6 189 50.3
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 1.2e-41 174.5 253 38.3
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 2.1e-38 163.7 111 72.1
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 8.9e-37 158.3 118 64.4
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 7.8e-33 145.2 106 60.4
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 3.9e-32 142.9 99 71.7
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 3.1e-29 133.3 91 64.8
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 3.1e-29 133.3 98 68.4
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 2.0e-28 130.6 93 66.7
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 2.7e-25 120.2 126 50.8
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 7.8e-25 118.6 126 50.0
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 1.1e-23 114.8 157 39.5
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 2.1e-22 110.5 65 76.9
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 2.8e-22 110.2 185 36.2
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 3.6e-22 109.8 146 43.2
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 5.8e-20 102.4 149 42.3
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 6.4e-19 99.0 58 75.9
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 5.1e-16 89.4 209 33.5
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 5.8e-12 75.9 116 39.7
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 4.9e-11 72.8 129 37.2
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 2.4e-10 70.5 123 38.2
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 9.3e-10 68.6 56 51.8
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 2.7e-09 67.0 61 54.1
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 4.6e-09 66.2 50 68.0
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 1.3e-08 64.7 100 40.0
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 1.7e-08 64.3 67 50.7
Lsat_1_v5_gn_0_18220 Lactuca sativa HOM05D001287 ORTHO05D001226 3.0e-08 63.5 224 27.7
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 1.1e-07 61.6 50 64.0
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 1.1e-07 61.6 49 57.1
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 1.5e-07 61.2 49 61.2
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 1.5e-07 61.2 50 64.0
Gohir.A05G354300 Gossypium hirsutum HOM05D001287 ORTHO05D001226 1.9e-07 60.8 211 27.0
Gorai.012G065500 Gossypium raimondii HOM05D001287 ORTHO05D001226 1.9e-07 60.8 211 27.0
SHI49364 Sapria himalayana HOM05D000624 ORTHO05D000495 4.3e-07 59.7 50 62.0
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 7.3e-07 58.9 53 54.7
vmacro05882 Vaccinium macrocarpon HOM05D001287 ORTHO05D001226 1.3e-06 58.2 213 25.4
Dinv15968 Davidia involucrata HOM05D065274 ORTHO05D179967 3.6e-06 56.6 55 49.1
Dinv18228 Davidia involucrata HOM05D065274 ORTHO05D180883 3.6e-06 56.6 55 49.1


User provided reference genes

Program Settings