Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 0.0e+00 1100.1 565 100.0
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 2.1e-236 822.4 572 74.7
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 3.6e-236 821.6 568 74.5
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 9.3e-232 807.0 571 73.6
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 7.9e-231 803.9 567 73.2
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 1.0e-230 803.5 570 73.5
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 1.1e-229 800.0 570 71.8
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 1.9e-229 799.3 568 71.3
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 1.3e-228 796.6 565 74.0
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 6.2e-228 794.3 546 74.7
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 6.2e-228 794.3 569 73.5
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 2.6e-226 788.9 570 71.1
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 5.8e-226 787.7 567 71.4
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 1.0e-225 786.9 571 71.8
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 1.0e-225 786.9 569 71.4
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 2.9e-225 785.4 571 72.2
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 3.2e-224 781.9 568 71.5
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 1.2e-223 780.0 568 72.4
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.6e-223 779.6 569 71.0
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 7.9e-223 777.3 570 71.6
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.9e-221 772.7 570 70.2
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 1.9e-221 772.7 568 71.7
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.5e-221 772.3 569 70.3
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 9.6e-221 770.4 569 69.6
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 9.6e-221 770.4 570 69.6
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 2.1e-220 769.2 570 69.5
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 2.1e-220 769.2 576 70.8
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 3.7e-220 768.5 567 69.5
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 8.2e-220 767.3 569 71.2
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.8e-219 766.1 569 71.4
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 2.4e-219 765.8 571 69.9
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.4e-219 765.8 569 71.0
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 2.4e-219 765.8 569 71.4
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 6.9e-219 764.2 569 71.0
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 3.4e-218 761.9 534 72.3
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 7.6e-218 760.8 571 70.1
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.9e-217 758.8 567 69.3
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 2.9e-217 758.8 499 76.2
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 6.5e-217 757.7 569 68.5
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 6.5e-217 757.7 564 70.4
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 3.2e-216 755.4 569 68.9
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 4.2e-216 755.0 575 69.4
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 9.3e-216 753.8 569 69.4
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 9.3e-216 753.8 568 68.7
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 3.6e-215 751.9 569 69.4
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 6.1e-215 751.1 597 69.2
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 6.1e-215 751.1 570 69.3
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 2.3e-214 749.2 571 67.4
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 6.7e-214 747.7 554 68.6
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.1e-213 746.9 567 68.6
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 2.5e-213 745.7 572 69.1
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 9.7e-213 743.8 568 69.0
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 9.7e-213 743.8 576 68.4
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 1.3e-212 743.4 569 68.4
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 2.4e-211 739.2 570 67.5
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 3.1e-211 738.8 556 69.6
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 4.1e-211 738.4 569 67.7
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 5.9e-210 734.6 567 67.7
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 7.7e-210 734.2 570 67.5
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 1.4e-208 729.9 569 66.4
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 2.7e-207 725.7 574 68.6
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 1.0e-206 723.8 571 65.3
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.3e-206 722.6 504 72.4
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 5.1e-206 721.5 504 71.8
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 5.1e-206 721.5 568 64.3
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 2.0e-205 719.5 569 67.0
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 9.7e-205 717.2 572 65.6
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 2.2e-204 716.1 566 66.3
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 6.3e-204 714.5 567 65.1
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 6.3e-204 714.5 504 71.8
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.8e-203 713.0 569 68.4
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 1.8e-203 713.0 568 66.5
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 9.1e-203 710.7 569 66.3
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 2.0e-202 709.5 569 64.9
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 4.5e-202 708.4 502 71.3
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 5.9e-202 708.0 571 64.1
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 1.7e-201 706.4 576 64.9
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 1.6e-199 699.9 502 69.9
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 4.7e-199 698.4 578 64.2
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 2.3e-198 696.0 566 64.3
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 3.0e-198 695.7 570 66.1
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 6.7e-198 694.5 578 64.0
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 6.7e-198 694.5 576 64.2
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 1.5e-197 693.3 570 63.9
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 3.3e-197 692.2 581 63.2
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 5.7e-197 691.4 549 65.6
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 8.2e-196 687.6 570 63.5
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 3.1e-195 685.6 569 64.3
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 5.3e-195 684.9 569 64.1
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 3.5e-194 682.2 572 63.6
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 2.2e-193 679.5 429 77.6
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 8.5e-193 677.6 570 64.9
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.5e-192 676.8 576 63.5
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 2.1e-191 672.9 585 62.1
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 6.1e-191 671.4 573 60.2
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 1.8e-190 669.8 569 62.4
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 2.3e-190 669.5 571 62.9
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 2.0e-189 666.4 563 63.4
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 3.3e-189 665.6 507 67.3
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 9.7e-189 664.1 582 61.9
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 1.7e-188 663.3 574 62.2
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 1.1e-187 660.6 571 62.5
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 1.8e-187 659.8 582 61.7
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 5.3e-187 658.3 574 62.7
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 1.6e-186 656.8 571 61.3
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 2.5e-184 649.4 568 61.3
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 1.6e-183 646.7 569 59.4
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 2.1e-183 646.4 540 64.1
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 4.0e-182 642.1 561 60.8
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 5.7e-181 638.3 552 62.1
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 3.8e-177 625.5 424 74.5
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 1.4e-174 617.1 582 58.8
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 3.5e-170 602.4 512 61.3
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 5.9e-170 601.7 502 66.3
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 1.9e-168 596.7 567 55.4
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 1.7e-164 583.6 436 67.4
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 2.9e-164 582.8 577 57.0
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 2.5e-160 569.7 522 57.5
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 1.6e-159 567.0 351 77.2
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 6.2e-151 538.5 383 66.3
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 8.9e-142 508.1 538 50.6
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 1.2e-141 507.7 493 52.7
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 1.7e-137 493.8 484 58.3
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 4.8e-127 459.1 557 50.4
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 8.1e-127 458.4 439 52.6
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 4.5e-125 452.6 537 45.1
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 5.8e-117 425.6 478 54.4
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 7.6e-117 425.2 258 77.9
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 1.9e-112 410.6 444 48.0
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 6.9e-102 375.6 502 46.2
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 8.5e-100 368.6 509 45.4
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 4.1e-94 349.7 301 62.1
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.3e-92 344.7 312 55.4
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 9.7e-88 328.6 476 39.7
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 8.8e-81 305.4 380 47.6
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 8.5e-76 288.9 461 37.3
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 4.1e-70 270.0 330 42.1
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 5.9e-69 266.2 241 59.8
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.1e-59 235.3 573 34.6
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 6.4e-39 166.4 240 42.9
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 4.3e-35 153.7 168 54.8
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 4.0e-33 147.1 619 23.4
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 1.4e-17 95.5 92 60.9
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 1.3e-12 79.0 85 55.3


User provided reference genes

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