Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 0.0e+00 1459.5 775 100.0
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 1.8e-289 999.2 690 75.4
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 1.1e-288 996.5 714 73.5
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 8.1e-287 990.3 695 74.0
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 1.9e-283 979.2 695 73.7
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 1.1e-280 969.9 694 72.6
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 5.6e-280 967.6 691 71.8
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 4.8e-279 964.5 727 69.6
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 6.2e-279 964.1 694 71.5
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 2.5e-275 952.2 697 71.4
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 2.1e-274 949.1 693 72.3
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 3.5e-274 948.3 694 71.3
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 6.0e-274 947.6 696 71.1
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 1.1e-272 943.3 696 71.4
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 1.1e-272 943.3 702 71.9
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 1.1e-272 943.3 690 70.4
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 2.5e-272 942.2 690 71.3
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 2.5e-272 942.2 690 70.1
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 3.3e-272 941.8 685 71.5
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 4.8e-271 937.9 688 71.2
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 1.4e-270 936.4 684 69.9
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 1.8e-270 936.0 696 71.0
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 3.1e-270 935.3 694 70.9
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 4.1e-270 934.9 719 68.7
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 1.5e-269 932.9 691 70.8
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 2.0e-269 932.6 690 69.4
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 1.0e-268 930.2 690 71.3
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 2.9e-268 928.7 691 69.2
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 5.0e-268 927.9 686 70.6
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 1.4e-267 926.4 697 69.6
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 2.5e-267 925.6 691 68.9
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 5.5e-267 924.5 696 70.0
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 7.2e-267 924.1 694 71.3
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 9.4e-267 923.7 691 69.0
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 3.0e-265 918.7 695 69.4
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 3.9e-265 918.3 690 70.3
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 5.1e-265 917.9 687 70.5
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 5.1e-265 917.9 678 70.8
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 6.7e-265 917.5 691 69.6
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 1.3e-263 913.3 691 70.8
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 1.7e-263 912.9 699 69.2
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 2.2e-263 912.5 690 68.6
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 2.8e-263 912.1 706 69.0
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 9.1e-262 907.1 645 72.4
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 2.0e-261 906.0 705 67.9
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 3.4e-261 905.2 697 68.7
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.0e-260 903.7 682 68.5
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 1.7e-260 902.9 688 68.2
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 1.7e-260 902.9 705 67.8
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 8.5e-260 900.6 684 68.9
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 1.9e-259 899.4 724 67.0
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 9.4e-259 897.1 682 67.9
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 2.7e-258 895.6 682 67.6
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 1.0e-257 893.6 691 69.3
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 6.7e-257 891.0 693 67.1
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 5.7e-256 887.9 682 66.6
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 8.2e-255 884.0 694 66.9
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 5.3e-254 881.3 692 65.9
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 7.7e-253 877.5 714 66.4
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 2.2e-252 875.9 691 66.0
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 6.5e-252 874.4 712 66.7
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 3.2e-251 872.1 691 66.9
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 7.2e-251 870.9 702 67.2
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 1.2e-250 870.2 688 66.1
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 1.2e-250 870.2 662 69.5
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 3.6e-250 868.6 688 67.7
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 3.6e-250 868.6 691 67.0
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 2.3e-249 865.9 691 66.7
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 6.7e-249 864.4 694 65.6
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 6.7e-249 864.4 667 68.7
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 1.1e-248 863.6 691 66.7
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 4.4e-248 861.7 685 65.5
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 4.4e-248 861.7 685 65.7
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 4.4e-248 861.7 747 64.0
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 7.4e-248 860.9 715 65.5
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 1.3e-247 860.1 687 65.2
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 1.7e-247 859.8 687 66.8
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 4.8e-247 858.2 692 65.6
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 4.1e-246 855.1 807 58.7
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 7.0e-246 854.4 685 64.7
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 2.0e-245 852.8 682 65.1
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 5.9e-245 851.3 690 64.9
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.3e-244 850.1 685 65.5
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 2.2e-244 849.4 645 69.0
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 5.5e-243 844.7 685 64.5
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 4.0e-241 838.6 685 64.5
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 5.2e-241 838.2 691 64.3
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 4.4e-240 835.1 691 64.3
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 5.7e-240 834.7 685 64.4
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 5.7e-240 834.7 688 64.2
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 1.3e-239 833.6 710 62.0
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 2.4e-238 829.3 650 67.1
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 7.0e-238 827.8 726 62.5
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 1.6e-237 826.6 683 64.4
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 2.0e-237 826.2 690 64.6
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 5.9e-237 824.7 684 63.0
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 1.3e-236 823.5 691 62.7
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 5.0e-236 821.6 645 67.0
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 1.5e-235 820.1 702 63.1
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 1.5e-235 820.1 645 65.4
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 1.5e-235 820.1 678 62.8
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 9.4e-235 817.4 684 62.6
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 1.2e-234 817.0 708 63.0
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 6.1e-234 814.7 691 63.5
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 1.2e-232 810.4 703 62.6
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 1.1e-230 803.9 690 61.2
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 3.1e-230 802.4 691 63.1
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 7.0e-230 801.2 685 61.8
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 7.7e-229 797.7 644 64.4
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 1.0e-228 797.3 692 62.3
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 2.5e-227 792.7 799 55.7
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 3.3e-227 792.3 696 59.8
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 5.5e-227 791.6 707 59.3
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 5.5e-227 791.6 648 64.2
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 2.8e-226 789.3 647 63.5
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 3.6e-226 788.9 645 63.1
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 8.0e-226 787.7 607 68.0
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 2.3e-225 786.2 646 63.3
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 1.2e-224 783.9 688 60.9
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 1.7e-223 780.0 653 63.1
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 1.6e-221 773.5 655 62.9
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 7.8e-221 771.2 623 65.0
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.3e-220 770.4 688 62.6
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 9.5e-219 764.2 661 61.9
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 9.5e-219 764.2 661 61.9
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 1.8e-217 760.0 643 63.1
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 1.1e-214 750.7 697 58.7
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 3.5e-213 745.7 620 63.9
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.0e-212 744.2 689 59.8
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 2.1e-210 736.5 721 56.0
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 6.2e-210 734.9 673 60.8
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 4.0e-209 732.3 687 57.4
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 9.5e-203 711.1 728 55.6
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 1.8e-193 680.2 737 53.3
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 2.5e-187 659.8 653 55.0
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 6.0e-181 638.6 646 56.3
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 7.1e-174 615.1 694 52.0
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 1.6e-170 604.0 540 58.7
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 8.1e-170 601.7 550 59.8
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 6.7e-148 528.9 503 57.7
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 3.4e-144 516.5 690 43.0
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 2.2e-138 497.3 432 62.7
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.3e-131 473.4 564 50.7
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.7e-122 444.5 356 65.2
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 7.0e-113 412.5 429 56.9
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 1.9e-110 404.4 361 56.5
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 4.4e-107 393.3 321 63.9
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 2.7e-104 384.0 305 67.9
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.5e-99 368.2 329 62.9
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 1.3e-95 355.1 380 53.7
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 8.6e-95 352.4 546 42.1
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 9.8e-91 339.0 350 51.1
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 3.6e-77 293.9 418 44.0
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 4.0e-68 263.8 647 32.3
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 1.0e-63 249.2 385 42.3
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 1.6e-61 241.9 293 48.8
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 1.8e-60 238.4 299 49.2
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 9.3e-57 226.1 262 52.7
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.3e-55 222.2 156 74.4
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 8.1e-53 213.0 658 29.0
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 4.6e-48 197.2 217 52.5
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 4.8e-45 187.2 200 52.5
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 8.2e-45 186.4 187 54.0
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 5.7e-38 163.7 199 51.3
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 7.7e-35 153.3 96 80.2
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 5.0e-34 150.6 118 61.9
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 1.4e-31 142.5 135 54.8
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.4e-27 127.9 163 46.0
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.8e-26 124.4 81 71.6
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 1.2e-24 119.4 79 73.4
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 2.1e-24 118.6 107 59.8
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 2.7e-24 118.2 89 66.3
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.3e-23 115.2 205 39.5
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 1.2e-19 102.8 300 31.0
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 1.6e-19 102.4 67 79.1
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 1.2e-16 92.8 107 48.6
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 1.5e-14 85.9 86 54.7
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 4.8e-13 80.9 144 33.3
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.8e-12 79.0 117 45.3
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 1.6e-11 75.9 164 32.3
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 1.4e-07 62.8 46 63.0
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 2.0e-06 58.9 178 29.8


User provided reference genes

Program Settings