Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 1.0e-260 902.9 465 100.0
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 2.3e-204 715.7 466 80.9
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 1.3e-202 709.9 472 78.2
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 1.7e-202 709.5 471 77.9
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 4.1e-201 704.9 473 78.0
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 4.1e-201 704.9 478 77.0
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 5.9e-200 701.0 465 77.4
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 7.7e-200 700.7 465 78.3
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 8.5e-199 697.2 465 77.4
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 5.5e-198 694.5 441 79.8
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 7.2e-198 694.1 465 76.8
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 1.6e-197 693.0 469 77.8
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 1.8e-196 689.5 465 76.1
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 2.3e-196 689.1 471 75.2
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 3.0e-196 688.7 428 82.0
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 4.0e-196 688.3 444 77.5
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 5.2e-196 688.0 469 76.5
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 6.8e-196 687.6 461 77.0
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 2.0e-195 686.0 441 79.4
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 7.5e-195 684.1 465 76.8
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 1.3e-194 683.3 465 75.7
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.7e-194 682.9 465 75.9
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 2.2e-194 682.6 443 77.9
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 2.2e-194 682.6 465 76.3
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 2.2e-194 682.6 471 76.2
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 4.9e-194 681.4 442 78.5
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 1.1e-193 680.2 470 75.3
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 1.1e-193 680.2 454 77.3
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 2.4e-193 679.1 450 76.4
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 3.1e-193 678.7 441 78.7
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 3.1e-193 678.7 465 76.6
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 5.4e-193 677.9 485 73.4
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 9.1e-193 677.2 465 75.9
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 1.6e-192 676.4 444 76.8
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.6e-192 676.4 467 75.8
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 2.0e-192 676.0 505 72.5
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 2.7e-192 675.6 471 74.5
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 3.5e-192 675.2 465 75.5
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 4.5e-192 674.9 466 74.7
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 7.7e-192 674.1 430 78.8
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 7.7e-192 674.1 465 75.3
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 7.7e-192 674.1 468 74.8
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 1.3e-191 673.3 429 80.4
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 2.9e-191 672.2 471 74.3
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 6.6e-191 671.0 428 78.7
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 1.1e-190 670.2 430 78.1
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 2.5e-190 669.1 473 73.8
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 3.3e-190 668.7 469 74.2
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 5.5e-190 667.9 473 73.6
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 7.2e-190 667.5 454 75.6
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 9.5e-190 667.2 469 74.0
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 1.4e-188 663.3 467 74.9
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 6.8e-188 661.0 428 79.0
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 8.9e-188 660.6 436 77.1
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 2.6e-187 659.1 471 72.8
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 2.6e-187 659.1 441 76.9
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 4.4e-187 658.3 469 73.1
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 4.4e-187 658.3 467 72.8
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 5.7e-187 657.9 467 73.7
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 9.8e-187 657.1 467 72.6
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 1.3e-186 656.8 467 73.7
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 2.2e-186 656.0 465 72.3
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 2.2e-186 656.0 441 75.5
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 1.4e-185 653.3 446 75.8
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 5.4e-185 651.4 464 74.1
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 9.2e-185 650.6 461 73.1
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 1.2e-184 650.2 463 73.0
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 1.2e-184 650.2 463 72.6
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 1.6e-184 649.8 463 72.8
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 2.0e-184 649.4 470 71.7
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 2.7e-184 649.0 463 73.0
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 3.5e-184 648.7 422 78.9
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 1.3e-183 646.7 463 71.9
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 1.3e-183 646.7 463 72.4
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 1.7e-183 646.4 463 72.1
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 2.3e-183 646.0 439 74.0
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 5.0e-183 644.8 441 74.6
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 8.6e-183 644.0 445 73.7
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 3.3e-182 642.1 461 73.3
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 3.3e-182 642.1 460 72.8
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 5.6e-182 641.3 463 71.7
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 3.6e-181 638.6 462 71.9
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 3.6e-181 638.6 463 72.1
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 6.1e-181 637.9 463 72.1
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 8.0e-181 637.5 484 68.8
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 2.0e-179 632.9 439 74.5
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 4.4e-179 631.7 489 68.5
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 5.8e-179 631.3 409 79.2
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 5.8e-179 631.3 475 70.5
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 8.3e-178 627.5 399 81.5
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 1.9e-177 626.3 545 62.2
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 2.0e-176 622.9 438 73.3
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 7.3e-174 614.4 462 69.7
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 4.7e-173 611.7 406 77.3
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 6.4e-170 601.3 415 76.4
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 3.2e-169 599.0 423 74.2
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 7.1e-169 597.8 392 78.3
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 5.1e-167 591.7 422 71.3
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.9e-166 589.7 425 73.6
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 8.9e-164 580.9 424 69.3
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.9e-158 563.1 409 72.4
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 4.3e-158 562.0 386 73.8
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 1.1e-156 557.4 423 68.6
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 1.1e-156 557.4 440 66.4
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.4e-156 557.0 404 75.0
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.3e-135 487.3 339 75.2
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 3.0e-135 486.1 465 60.2
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 2.8e-133 479.6 424 63.9
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 4.5e-131 472.2 430 57.9
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 1.3e-130 470.7 360 68.6
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 3.1e-124 449.5 329 70.2
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 6.9e-124 448.4 437 57.4
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 2.0e-123 446.8 325 73.5
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 1.3e-119 434.1 434 55.5
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 5.0e-106 389.0 252 79.4
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 3.6e-104 382.9 388 56.2
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 3.2e-81 306.6 202 78.2
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 5.5e-81 305.8 242 67.8
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 8.0e-80 302.0 195 79.5
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 2.2e-77 293.9 203 74.4
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 7.3e-73 278.9 204 71.6
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 7.8e-67 258.8 218 62.8
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 6.8e-63 245.7 147 81.0
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 4.4e-62 243.0 182 72.5
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.5e-54 218.0 465 35.7
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.1e-47 193.7 124 75.0
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 5.4e-36 156.4 137 62.8
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 5.4e-36 156.4 137 62.8
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 1.1e-33 148.7 263 40.3
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 3.3e-33 147.1 158 57.6
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 6.9e-31 139.4 263 38.4
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 6.9e-31 139.4 133 56.4
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 2.9e-29 134.0 102 69.6
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.7e-27 127.5 124 56.5
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 1.9e-25 121.3 101 68.3
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 2.5e-25 120.9 101 61.4
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 9.9e-22 109.0 120 55.8
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 1.2e-19 102.1 85 63.5
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 6.5e-13 79.7 47 72.3
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 6.5e-13 79.7 47 72.3
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 4.2e-12 77.0 92 48.9
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 5.5e-12 76.6 62 54.8
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 5.5e-12 76.6 46 69.6
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 5.5e-12 76.6 46 69.6
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 2.7e-11 74.3 165 35.2
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 3.5e-11 73.9 76 53.9
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 1.3e-10 72.0 45 73.3
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 8.7e-10 69.3 64 56.2
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 1.1e-09 68.9 64 56.2
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.9e-09 68.2 177 31.1
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 2.5e-09 67.8 76 46.1
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 3.3e-09 67.4 64 54.7
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 3.3e-09 67.4 64 54.7
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 3.3e-09 67.4 64 54.7
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 3.3e-09 67.4 64 54.7
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 3.3e-09 67.4 64 54.7
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 3.3e-09 67.4 64 54.7
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 3.3e-09 67.4 64 54.7
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 4.3e-09 67.0 63 55.6
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 5.7e-09 66.6 65 55.4
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 5.7e-09 66.6 64 54.7
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 7.4e-09 66.2 45 64.4
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 3.1e-07 60.8 48 68.8
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 6.9e-07 59.7 66 51.5
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 9.0e-07 59.3 45 66.7
Lsat_1_v5_gn_3_20180 Lactuca sativa HOM05D000819 ORTHO05D000661 1.2e-06 58.9 120 40.0
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 4.5e-06 57.0 81 46.9


User provided reference genes

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