Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 1.7e-241 839.0 435 100.0
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 9.6e-152 540.8 441 66.2
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 8.7e-145 517.7 440 63.6
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 5.3e-142 508.4 440 62.5
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 9.0e-142 507.7 407 65.4
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 4.5e-141 505.4 438 63.7
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 2.4e-139 499.6 429 63.9
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 9.3e-139 497.7 438 61.2
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 4.0e-134 482.3 421 61.5
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 9.0e-134 481.1 388 66.8
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 1.0e-132 477.6 415 62.4
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 4.9e-132 475.3 421 61.0
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 4.9e-132 475.3 421 60.8
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 1.2e-130 470.7 413 61.7
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 2.1e-130 469.9 415 61.2
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 1.0e-129 467.6 429 60.1
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 1.3e-129 467.2 424 59.9
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 1.5e-128 463.8 410 61.2
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 7.4e-128 461.5 426 59.6
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 1.3e-127 460.7 414 59.4
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 3.7e-127 459.1 389 63.5
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 4.5e-125 452.2 415 59.8
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 2.2e-124 449.9 396 60.6
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 4.9e-124 448.7 388 62.1
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 6.1e-122 441.8 411 60.1
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 2.3e-121 439.9 404 60.1
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 3.9e-121 439.1 418 58.1
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 3.3e-120 436.0 429 57.6
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 9.7e-120 434.5 393 59.5
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 1.4e-118 430.6 429 57.3
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 2.4e-118 429.9 440 55.5
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 2.6e-117 426.4 430 53.5
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 7.7e-117 424.9 429 57.1
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 1.3e-116 424.1 419 57.3
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 1.7e-116 423.7 377 60.7
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 5.0e-116 422.2 379 62.8
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 2.5e-115 419.9 406 55.2
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 1.2e-114 417.5 383 61.1
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 3.6e-114 416.0 446 52.5
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 4.6e-114 415.6 394 56.9
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 4.6e-114 415.6 431 54.8
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 9.7e-112 407.9 428 52.8
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 1.1e-110 404.4 410 55.4
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 1.4e-110 404.1 396 55.6
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 1.8e-110 403.7 392 57.9
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 4.1e-110 402.5 416 54.1
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 6.9e-110 401.7 407 55.5
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 1.5e-109 400.6 428 55.8
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 4.5e-109 399.1 410 55.1
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 5.0e-108 395.6 419 53.0
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 5.0e-108 395.6 407 54.1
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 1.1e-107 394.4 407 53.6
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 1.4e-107 394.0 415 53.7
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 2.5e-107 393.3 407 53.3
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 3.2e-107 392.9 410 54.6
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 3.2e-107 392.9 407 53.8
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 5.5e-107 392.1 454 50.2
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 2.1e-106 390.2 393 55.0
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 4.7e-106 389.0 409 53.5
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 1.0e-105 387.9 407 53.1
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 3.0e-105 386.3 428 50.7
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 2.0e-104 383.6 423 51.8
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 2.6e-104 383.3 430 51.2
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 2.6e-104 383.3 433 52.0
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 7.4e-104 381.7 424 50.7
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 4.8e-103 379.0 420 51.7
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 8.2e-103 378.3 429 52.2
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 1.1e-102 377.9 406 52.2
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 3.1e-102 376.3 431 50.8
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 4.1e-102 375.9 434 48.6
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 1.2e-101 374.4 442 49.5
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 1.0e-100 371.3 404 52.2
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 4.2e-99 365.9 415 52.0
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 2.3e-97 360.1 392 51.5
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 7.4e-96 355.1 437 47.8
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 1.7e-95 354.0 367 55.3
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 7.0e-94 348.6 324 61.1
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 5.9e-93 345.5 425 47.3
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 1.0e-92 344.7 426 48.4
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 2.9e-92 343.2 445 48.3
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 9.8e-88 328.2 391 49.6
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 1.7e-87 327.4 339 56.3
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 2.7e-85 320.1 419 45.8
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 4.5e-85 319.3 335 55.5
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 5.9e-85 318.9 337 55.2
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 7.7e-85 318.5 553 41.2
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 2.7e-82 310.1 315 55.9
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 6.3e-79 298.9 391 46.3
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 7.7e-77 292.0 216 67.6
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 2.3e-76 290.4 356 48.0
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 1.5e-75 287.7 353 47.3
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 8.0e-74 282.0 421 41.3
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 2.0e-72 277.3 299 51.2
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 4.9e-71 272.7 201 69.2
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 7.8e-69 265.4 393 43.5
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 1.5e-67 261.2 392 40.8
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 4.7e-66 256.1 293 50.9
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 3.1e-65 253.4 436 40.4
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 1.3e-63 248.1 251 53.8
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 7.1e-54 215.7 416 35.6
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 2.2e-47 194.1 329 38.9
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 1.5e-43 181.4 409 33.0
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 9.6e-43 178.7 220 46.8
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 1.8e-41 174.5 392 32.4
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 1.7e-39 167.9 393 32.1
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 7.8e-37 159.1 108 75.0
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 5.1e-36 156.4 372 29.3
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 2.4e-33 147.5 301 34.2
Cpa.g.sc169.5 Carica papaya HOM05D006045 ORTHO05D007678 1.3e-28 131.7 137 54.0
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 1.5e-27 128.3 175 46.3
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 5.6e-27 126.3 113 58.4
MD07G1261700 Malus domestica HOM05D006045 ORTHO05D007678 5.6e-27 126.3 120 60.0
CBR_g8766 Chara braunii HOM05D006045 ORTHO05D007678 2.2e-23 114.4 413 27.1
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 3.1e-17 94.0 101 51.5
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 1.2e-16 92.0 241 32.4
Medtr7g062690 Medicago truncatula HOM05D006045 ORTHO05D007678 1.7e-07 61.6 71 46.5
unitig_21.g21014 Utricularia gibba HOM05D006045 ORTHO05D007678 2.2e-07 61.2 74 43.2
Dinv35575 Davidia involucrata HOM05D006045 ORTHO05D007678 5.0e-07 60.1 90 40.0
Lsat_1_v5_gn_1_108300 Lactuca sativa HOM05D000747 ORTHO05D015226 2.5e-06 57.8 58 46.6
TPR.G40448 Trifolium pratense HOM05D006045 ORTHO05D007678 2.5e-06 57.8 57 52.6
COL.COLO4_14761 Corchorus olitorius HOM05D006045 ORTHO05D007678 5.5e-06 56.6 64 50.0


User provided reference genes

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