Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.0e-60 235.0 116 100.0
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.3e-33 144.4 100 77.0
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 6.3e-26 120.9 75 81.3
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.1e-25 120.2 97 69.1
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 4.1e-25 118.2 73 76.7
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 7.0e-25 117.5 73 79.5
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 1.6e-24 116.3 66 84.8
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 2.0e-24 115.9 87 72.4
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 2.0e-24 115.9 93 64.5
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 2.6e-24 115.5 84 69.0
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 3.5e-24 115.2 66 83.3
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 3.5e-24 115.2 64 85.9
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 4.5e-24 114.8 93 61.3
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 4.5e-24 114.8 93 61.3
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 4.5e-24 114.8 93 61.3
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 5.9e-24 114.4 66 83.3
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 5.9e-24 114.4 77 72.7
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 5.9e-24 114.4 68 77.9
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 7.7e-24 114.0 68 82.4
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 7.7e-24 114.0 68 82.4
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 7.7e-24 114.0 74 73.0
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 7.7e-24 114.0 74 73.0
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 7.7e-24 114.0 68 79.4
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 1.0e-23 113.6 66 81.8
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 1.0e-23 113.6 68 80.9
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.3e-23 113.2 68 79.4
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.3e-23 113.2 68 79.4
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 1.3e-23 113.2 68 79.4
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 1.3e-23 113.2 68 79.4
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 1.3e-23 113.2 68 77.9
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 1.7e-23 112.8 68 79.4
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 1.7e-23 112.8 103 58.3
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 2.2e-23 112.5 66 81.8
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 2.2e-23 112.5 64 81.2
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.2e-23 112.5 68 79.4
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 2.2e-23 112.5 66 80.3
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 2.2e-23 112.5 74 73.0
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 2.2e-23 112.5 64 82.8
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 2.9e-23 112.1 87 65.5
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 3.8e-23 111.7 68 76.5
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 5.0e-23 111.3 66 80.3
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 5.0e-23 111.3 68 77.9
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 6.5e-23 110.9 77 71.4
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 6.5e-23 110.9 72 72.2
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 6.5e-23 110.9 72 72.2
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 8.5e-23 110.5 68 73.5
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 8.5e-23 110.5 66 80.3
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 8.5e-23 110.5 100 58.0
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 8.5e-23 110.5 68 77.9
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.5e-22 109.8 66 78.8
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 1.5e-22 109.8 66 77.3
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.5e-22 109.8 64 78.1
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.9e-22 109.4 66 77.3
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 2.5e-22 109.0 77 70.1
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 2.5e-22 109.0 88 63.6
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 2.5e-22 109.0 74 70.3
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 3.2e-22 108.6 66 77.3
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 3.2e-22 108.6 88 64.8
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 3.2e-22 108.6 64 79.7
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 5.5e-22 107.8 64 79.7
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 7.2e-22 107.5 66 78.8
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 7.2e-22 107.5 68 73.5
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 7.2e-22 107.5 68 72.1
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 7.2e-22 107.5 68 76.5
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 7.2e-22 107.5 71 73.2
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 9.4e-22 107.1 77 70.1
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 9.4e-22 107.1 77 70.1
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 9.4e-22 107.1 77 70.1
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 9.4e-22 107.1 64 79.7
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 9.4e-22 107.1 100 57.0
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 1.2e-21 106.7 77 70.1
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 1.2e-21 106.7 68 73.5
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.2e-21 106.7 66 75.8
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 1.2e-21 106.7 64 81.2
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 2.1e-21 105.9 84 65.5
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 2.1e-21 105.9 84 65.5
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 2.1e-21 105.9 77 66.2
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 2.1e-21 105.9 68 76.5
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 2.7e-21 105.5 68 75.0
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.7e-21 105.5 59 86.4
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 2.7e-21 105.5 64 76.6
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 3.6e-21 105.1 113 51.3
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 4.7e-21 104.8 75 72.0
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 4.7e-21 104.8 66 77.3
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 6.1e-21 104.4 64 79.7
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 6.1e-21 104.4 93 58.1
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 8.0e-21 104.0 64 75.0
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 8.0e-21 104.0 64 75.0
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.0e-20 103.6 84 63.1
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 1.0e-20 103.6 75 69.3
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 1.0e-20 103.6 75 69.3
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 1.4e-20 103.2 68 72.1
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 1.4e-20 103.2 64 78.1
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 1.4e-20 103.2 64 73.4
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.4e-20 103.2 68 72.1
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 1.8e-20 102.8 64 76.6
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 2.3e-20 102.4 86 61.6
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 2.3e-20 102.4 62 79.0
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 2.3e-20 102.4 62 79.0
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 2.3e-20 102.4 62 79.0
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 2.3e-20 102.4 68 72.1
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 3.0e-20 102.1 77 66.2
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 4.0e-20 101.7 64 75.0
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 5.2e-20 101.3 64 76.6
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 6.8e-20 100.9 83 59.0
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 6.8e-20 100.9 57 80.7
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 8.8e-20 100.5 64 75.0
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 1.2e-19 100.1 64 78.1
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 1.2e-19 100.1 66 72.7
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 2.0e-19 99.4 64 76.6
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 2.0e-19 99.4 68 69.1
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 2.6e-19 99.0 64 75.0
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 2.6e-19 99.0 64 73.4
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 2.6e-19 99.0 64 73.4
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 3.4e-19 98.6 77 63.6
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 5.7e-19 97.8 62 74.2
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 1.7e-18 96.3 105 50.5
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 1.7e-18 96.3 97 54.6
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.8e-18 95.5 64 71.9
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 7.0e-17 90.9 59 69.5
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 1.3e-15 86.7 54 72.2
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 2.2e-15 85.9 78 55.1
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 5.0e-15 84.7 73 57.5
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 1.5e-14 83.2 97 52.6
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.9e-14 82.8 61 65.6
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 4.2e-14 81.6 56 67.9
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 5.5e-14 81.3 47 80.9
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 1.2e-13 80.1 47 78.7
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 4.7e-13 78.2 54 72.2
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 2.3e-12 75.9 48 70.8
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 3.0e-12 75.5 98 42.9
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.4e-11 72.0 50 68.0
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 4.4e-11 71.6 77 49.4
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 4.4e-11 71.6 44 75.0
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 7.5e-11 70.9 89 42.7
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.0e-07 60.5 37 78.4


User provided reference genes

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