Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.6e-55 219.2 112 100.0
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.3e-46 187.6 111 85.6
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.3e-46 187.6 111 85.6
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.1e-43 179.9 97 92.8
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.2e-42 176.4 133 72.2
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 8.5e-28 127.1 109 63.3
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 5.5e-27 124.4 84 71.4
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.2e-26 123.2 111 59.5
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.7e-26 122.1 106 57.5
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 1.0e-25 120.2 98 63.3
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.0e-25 120.2 109 60.6
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.8e-25 119.4 110 60.9
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 3.9e-25 118.2 70 77.1
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 5.2e-25 117.9 113 61.1
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 6.7e-25 117.5 103 60.2
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 6.7e-25 117.5 75 76.0
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 6.7e-25 117.5 89 67.4
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 1.1e-24 116.7 102 60.8
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 1.5e-24 116.3 108 58.3
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 2.0e-24 115.9 75 74.7
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 2.0e-24 115.9 80 67.5
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 2.6e-24 115.5 108 60.2
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 2.6e-24 115.5 73 76.7
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 3.3e-24 115.2 108 60.2
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 3.3e-24 115.2 102 60.8
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 3.3e-24 115.2 79 70.9
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 3.3e-24 115.2 114 56.1
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 4.4e-24 114.8 106 55.7
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 4.4e-24 114.8 109 55.0
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 4.4e-24 114.8 104 61.5
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 5.7e-24 114.4 113 58.4
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 7.4e-24 114.0 71 77.5
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 9.7e-24 113.6 111 59.5
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 9.7e-24 113.6 109 58.7
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 9.7e-24 113.6 71 76.1
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 9.7e-24 113.6 103 61.2
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 9.7e-24 113.6 103 61.2
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 1.3e-23 113.2 108 54.6
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 1.3e-23 113.2 70 78.6
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.3e-23 113.2 70 78.6
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.3e-23 113.2 70 78.6
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 1.3e-23 113.2 111 56.8
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.7e-23 112.8 112 58.9
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 2.2e-23 112.5 111 56.8
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.8e-23 112.1 84 69.0
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 2.8e-23 112.1 84 69.0
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 2.8e-23 112.1 91 65.9
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 2.8e-23 112.1 114 55.3
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 4.8e-23 111.3 85 64.7
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 4.8e-23 111.3 88 62.5
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 6.3e-23 110.9 108 59.3
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 6.3e-23 110.9 109 57.8
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 6.3e-23 110.9 111 55.9
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 6.3e-23 110.9 86 66.3
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 8.2e-23 110.5 102 55.9
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 1.1e-22 110.2 108 59.3
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 1.4e-22 109.8 104 57.7
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 1.4e-22 109.8 70 78.6
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 1.4e-22 109.8 104 57.7
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 1.4e-22 109.8 104 57.7
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 1.4e-22 109.8 70 78.6
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.8e-22 109.4 109 56.9
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 1.8e-22 109.4 113 54.0
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 1.8e-22 109.4 81 65.4
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 2.4e-22 109.0 108 60.2
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 2.4e-22 109.0 108 60.2
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 2.4e-22 109.0 108 60.2
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 2.4e-22 109.0 70 78.6
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 2.4e-22 109.0 69 81.2
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 2.4e-22 109.0 102 57.8
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 3.1e-22 108.6 105 62.9
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 3.1e-22 108.6 111 56.8
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 4.1e-22 108.2 111 56.8
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 4.1e-22 108.2 70 80.0
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 4.1e-22 108.2 109 56.9
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 4.1e-22 108.2 88 62.5
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 4.1e-22 108.2 111 56.8
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 4.1e-22 108.2 114 53.5
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 5.3e-22 107.8 69 73.9
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 5.3e-22 107.8 70 70.0
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 5.3e-22 107.8 70 70.0
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 7.0e-22 107.5 107 52.3
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 7.0e-22 107.5 111 55.0
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 7.0e-22 107.5 111 55.9
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 9.1e-22 107.1 78 70.5
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 9.1e-22 107.1 109 58.7
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 9.1e-22 107.1 103 57.3
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.2e-21 106.7 108 58.3
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 1.2e-21 106.7 71 74.6
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 1.2e-21 106.7 102 56.9
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 1.6e-21 106.3 90 64.4
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 1.6e-21 106.3 71 71.8
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 1.6e-21 106.3 74 66.2
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 2.0e-21 105.9 105 61.0
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.0e-21 105.9 65 73.8
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.6e-21 105.5 112 57.1
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 3.5e-21 105.1 73 68.5
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 3.5e-21 105.1 122 50.8
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 3.5e-21 105.1 70 70.0
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 3.5e-21 105.1 111 53.2
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 4.5e-21 104.8 111 55.0
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 4.5e-21 104.8 102 59.8
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 4.5e-21 104.8 65 75.4
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 4.5e-21 104.8 104 55.8
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 5.9e-21 104.4 101 56.4
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 7.7e-21 104.0 82 61.0
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 1.0e-20 103.6 60 80.0
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 1.3e-20 103.2 95 57.9
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.3e-20 103.2 70 74.3
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.3e-20 103.2 99 57.6
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 1.7e-20 102.8 113 53.1
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 2.9e-20 102.1 62 77.4
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 6.5e-20 100.9 106 53.8
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 8.5e-20 100.5 113 54.0
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 1.5e-19 99.8 65 73.8
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 1.9e-19 99.4 105 54.3
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 7.2e-19 97.4 101 52.5
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 7.2e-19 97.4 70 62.9
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.6e-18 95.1 53 84.9
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 4.7e-18 94.7 78 59.0
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.8e-17 92.8 64 71.9
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 5.2e-17 91.3 53 79.2
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 1.2e-16 90.1 60 73.3
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 1.2e-16 90.1 53 75.5
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.5e-16 89.7 96 53.1
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 4.4e-16 88.2 53 73.6
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 2.2e-15 85.9 62 64.5
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 8.2e-15 84.0 62 64.5
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 2.7e-13 79.0 114 44.7
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 7.7e-13 77.4 73 53.4
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 1.3e-12 76.6 105 41.0
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 1.7e-12 76.3 62 56.5
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 8.5e-12 73.9 42 76.2
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 3.6e-10 68.6 124 41.1
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 4.4e-08 61.6 34 82.4
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 4.8e-07 58.2 132 35.6


User provided reference genes

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