Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.2e-52 209.5 106 100.0
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 8.0e-44 180.3 97 92.8
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.0e-38 161.0 97 84.5
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.0e-38 161.0 97 84.5
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.2e-34 149.8 119 69.7
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 2.0e-23 112.5 100 59.0
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 2.8e-20 102.1 95 57.9
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 4.0e-19 98.2 70 68.6
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 4.0e-19 98.2 98 59.2
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.2e-18 96.7 97 56.7
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.2e-18 96.7 97 55.7
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.6e-18 95.5 92 53.3
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 3.4e-18 95.1 97 54.6
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 3.4e-18 95.1 92 54.3
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 4.4e-18 94.7 95 55.8
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 9.8e-18 93.6 100 54.0
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 1.7e-17 92.8 92 55.4
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 1.7e-17 92.8 89 59.6
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 1.7e-17 92.8 89 59.6
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 1.7e-17 92.8 90 58.9
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 2.2e-17 92.4 89 56.2
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 2.2e-17 92.4 94 54.3
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 2.9e-17 92.0 66 65.2
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 2.9e-17 92.0 98 57.1
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 2.9e-17 92.0 75 64.0
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 3.7e-17 91.7 96 55.2
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 3.7e-17 91.7 88 55.7
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 3.7e-17 91.7 88 56.8
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 3.7e-17 91.7 97 53.6
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 6.4e-17 90.9 61 70.5
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 6.4e-17 90.9 56 73.2
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 8.3e-17 90.5 97 56.7
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 8.3e-17 90.5 65 66.2
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 8.3e-17 90.5 99 51.5
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 8.3e-17 90.5 94 56.4
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 8.3e-17 90.5 98 54.1
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 1.1e-16 90.1 94 56.4
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 1.1e-16 90.1 93 50.5
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.1e-16 90.1 95 51.6
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 1.4e-16 89.7 70 65.7
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 1.9e-16 89.4 97 52.6
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 2.4e-16 89.0 61 70.5
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 2.4e-16 89.0 55 78.2
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 3.2e-16 88.6 74 60.8
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 3.2e-16 88.6 88 52.3
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 4.1e-16 88.2 57 75.4
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 4.1e-16 88.2 57 75.4
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 4.1e-16 88.2 57 75.4
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 4.1e-16 88.2 70 64.3
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 4.1e-16 88.2 70 64.3
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 4.1e-16 88.2 55 76.4
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 4.1e-16 88.2 72 63.9
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 5.4e-16 87.8 57 73.7
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 7.1e-16 87.4 62 71.0
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 7.1e-16 87.4 55 76.4
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 9.2e-16 87.0 95 53.7
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 9.2e-16 87.0 97 53.6
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 9.2e-16 87.0 97 53.6
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 9.2e-16 87.0 88 54.5
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 1.2e-15 86.7 64 70.3
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 1.2e-15 86.7 94 48.9
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 1.6e-15 86.3 100 51.0
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.1e-15 85.9 95 56.8
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 2.1e-15 85.9 99 50.5
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 2.7e-15 85.5 89 53.9
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 3.5e-15 85.1 56 76.8
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 3.5e-15 85.1 56 76.8
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 3.5e-15 85.1 94 55.3
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 3.5e-15 85.1 62 66.1
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 3.5e-15 85.1 77 58.4
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 4.6e-15 84.7 71 60.6
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 4.6e-15 84.7 90 53.3
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 4.6e-15 84.7 90 53.3
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 4.6e-15 84.7 90 53.3
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 6.0e-15 84.3 94 55.3
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 6.0e-15 84.3 97 52.6
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 6.0e-15 84.3 55 72.7
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 6.0e-15 84.3 97 52.6
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 7.8e-15 84.0 95 52.6
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 7.8e-15 84.0 74 58.1
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 7.8e-15 84.0 57 68.4
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.7e-14 82.8 94 54.3
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 1.7e-14 82.8 94 56.4
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 1.7e-14 82.8 94 56.4
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 1.7e-14 82.8 94 56.4
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 1.7e-14 82.8 56 75.0
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.7e-14 82.8 95 51.6
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 1.7e-14 82.8 100 53.0
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 2.3e-14 82.4 49 79.6
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.3e-14 82.4 62 66.1
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 2.3e-14 82.4 67 59.7
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 2.3e-14 82.4 100 51.0
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 3.0e-14 82.0 103 48.5
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 3.0e-14 82.0 97 49.5
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 3.0e-14 82.0 98 52.0
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 3.0e-14 82.0 56 67.9
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 3.0e-14 82.0 56 67.9
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 3.0e-14 82.0 62 64.5
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 3.0e-14 82.0 92 52.2
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 3.0e-14 82.0 92 52.2
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 3.0e-14 82.0 88 52.3
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 3.9e-14 81.6 61 65.6
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 3.9e-14 81.6 55 76.4
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 3.9e-14 81.6 92 55.4
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 5.1e-14 81.3 88 56.8
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 6.6e-14 80.9 56 73.2
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 8.6e-14 80.5 97 50.5
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 8.6e-14 80.5 59 64.4
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 1.1e-13 80.1 48 79.2
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.1e-13 80.1 108 46.3
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 1.5e-13 79.7 91 56.0
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 1.5e-13 79.7 46 78.3
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.9e-13 79.3 56 66.1
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 2.5e-13 79.0 68 55.9
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 3.3e-13 78.6 57 66.7
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 4.3e-13 78.2 91 54.9
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 4.3e-13 78.2 76 56.6
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 5.6e-13 77.8 99 48.5
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 9.5e-13 77.0 91 50.5
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 6.2e-12 74.3 58 62.1
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 4.0e-11 71.6 64 59.4
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 5.2e-11 71.2 97 42.3
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 6.8e-11 70.9 50 68.0
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 6.8e-11 70.9 87 46.0
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 5.8e-10 67.8 39 74.4
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 7.6e-10 67.4 39 79.5
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 1.7e-09 66.2 39 76.9
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 1.7e-09 66.2 39 74.4
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.4e-08 63.2 48 62.5
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.9e-08 62.8 48 60.4
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 2.4e-08 62.4 91 40.7
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 1.6e-07 59.7 48 58.3
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 1.0e-06 57.0 46 56.5
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 3.0e-06 55.5 109 39.4


User provided reference genes

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