Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 8.4e-171 603.6 305 100.0
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 1.8e-112 409.8 301 68.1
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 1.5e-106 390.2 300 66.3
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 8.0e-105 384.4 298 66.1
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 6.8e-104 381.3 331 62.2
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 2.0e-103 379.8 331 61.9
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 1.9e-101 373.2 308 66.2
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 4.1e-101 372.1 303 63.0
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 9.2e-101 370.9 300 67.0
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.6e-100 370.2 302 64.2
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 1.6e-100 370.2 302 64.2
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 2.7e-100 369.4 306 63.1
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 3.5e-100 369.0 313 61.3
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 2.3e-99 366.3 313 61.3
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.5e-98 363.6 302 63.6
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 5.6e-98 361.7 307 64.8
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 6.2e-97 358.2 302 61.6
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 1.1e-96 357.5 319 61.1
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 1.2e-95 354.0 303 61.7
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 2.0e-95 353.2 319 60.8
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 2.0e-95 353.2 321 62.0
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 7.5e-95 351.3 319 60.2
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 2.2e-94 349.7 302 59.6
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 6.4e-94 348.2 322 59.3
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 7.1e-93 344.7 309 59.5
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 9.2e-93 344.4 303 60.1
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.5e-92 342.4 300 62.3
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 6.0e-92 341.7 308 58.8
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.3e-91 340.5 300 62.0
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 1.9e-90 336.7 304 62.5
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 2.5e-90 336.3 302 59.9
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 4.3e-90 335.5 304 59.5
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 4.3e-90 335.5 300 60.3
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 9.5e-90 334.3 304 59.5
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.6e-89 333.6 300 60.7
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 1.6e-89 333.6 297 58.9
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 6.2e-89 331.6 306 59.8
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 1.4e-88 330.5 302 60.6
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 2.3e-88 329.7 306 59.5
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 6.8e-88 328.2 306 59.5
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 8.9e-88 327.8 308 59.1
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 1.2e-87 327.4 312 58.7
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 1.2e-87 327.4 299 57.9
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.5e-87 327.0 306 60.1
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 1.5e-87 327.0 312 58.0
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 3.4e-87 325.9 301 59.5
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 2.2e-86 323.2 312 57.4
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 3.8e-86 322.4 305 58.0
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 1.1e-85 320.9 300 55.3
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 1.9e-85 320.1 310 56.5
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 2.4e-85 319.7 310 56.8
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 4.1e-85 318.9 312 59.6
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 4.1e-85 318.9 304 56.6
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 5.4e-85 318.5 305 57.4
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 7.1e-85 318.2 313 58.5
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 9.2e-85 317.8 301 57.5
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 1.2e-84 317.4 311 56.9
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 2.7e-84 316.2 298 57.0
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 4.6e-84 315.5 311 56.9
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 6.0e-84 315.1 302 58.3
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 6.0e-84 315.1 299 59.2
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 1.7e-83 313.5 302 55.0
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 2.3e-83 313.2 306 56.9
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 3.0e-83 312.8 301 56.1
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 3.0e-83 312.8 303 55.8
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 8.6e-83 311.2 303 55.8
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 1.1e-82 310.8 298 56.4
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 2.5e-82 309.7 301 55.5
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 2.8e-81 306.2 323 55.7
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 3.6e-81 305.8 307 57.0
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 1.8e-80 303.5 309 54.0
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 3.1e-80 302.8 308 56.8
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 2.0e-79 300.1 308 55.8
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 2.6e-79 299.7 316 55.1
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 3.4e-79 299.3 302 54.3
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 9.3e-77 291.2 295 53.9
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 1.7e-75 287.0 307 53.7
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 3.0e-75 286.2 291 56.4
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 5.1e-75 285.4 248 62.9
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 4.3e-74 282.3 286 55.2
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 1.4e-72 277.3 314 53.5
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 6.9e-72 275.0 310 55.8
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 2.9e-70 269.6 250 57.2
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 3.8e-70 269.2 315 55.2
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 1.1e-69 267.7 315 54.9
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 3.2e-69 266.2 308 52.3
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 7.1e-69 265.0 314 54.1
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 9.3e-69 264.6 315 54.9
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 9.3e-69 264.6 315 54.9
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 9.3e-69 264.6 307 50.8
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.2e-68 264.2 312 51.9
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 6.7e-67 258.5 313 54.3
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 4.3e-66 255.8 302 49.0
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 9.6e-66 254.6 307 50.2
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 1.4e-64 250.8 307 52.1
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 2.6e-63 246.5 295 48.5
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 3.5e-60 236.1 388 40.2
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 7.9e-60 235.0 303 46.5
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 5.1e-59 232.3 303 46.2
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 2.5e-58 229.9 301 47.2
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 2.5e-58 229.9 255 52.9
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 2.5e-58 229.9 304 45.7
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 7.4e-58 228.4 317 46.1
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.8e-57 225.7 322 45.7
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.1e-56 224.6 315 45.7
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 1.4e-56 224.2 313 46.6
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 1.8e-56 223.8 306 45.4
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 2.4e-56 223.4 234 53.0
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 1.5e-55 220.7 282 47.9
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 2.9e-54 216.5 339 44.5
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 2.5e-53 213.4 300 44.7
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 1.3e-51 207.6 300 46.0
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 1.9e-42 177.2 299 42.8
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 1.8e-40 170.6 312 42.6
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 1.8e-40 170.6 363 38.3
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 6.9e-40 168.7 299 43.1
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 1.5e-39 167.5 183 53.0
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 5.9e-39 165.6 329 40.7
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.1e-36 155.6 141 56.0
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 2.3e-35 153.7 249 45.8
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 1.3e-33 147.9 225 43.1
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 2.2e-33 147.1 107 70.1
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 1.1e-32 144.8 205 46.3
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 1.8e-32 144.1 125 64.0
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 2.4e-32 143.7 158 53.2
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 5.3e-32 142.5 184 45.1
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 9.1e-32 141.7 107 67.3
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 5.9e-31 139.0 283 40.6
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 8.5e-30 135.2 169 49.1
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.9e-29 134.0 189 45.5
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 9.4e-29 131.7 215 42.8
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.6e-28 131.0 172 48.8
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 2.7e-28 130.2 145 50.3
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 6.7e-27 125.6 155 46.5
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 2.6e-26 123.6 111 60.4
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 9.7e-26 121.7 169 47.3
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 2.8e-25 120.2 154 44.8
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 4.8e-25 119.4 169 46.7
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 1.1e-24 118.2 111 54.1
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 5.3e-24 115.9 283 38.9
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 9.1e-24 115.2 279 34.1
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 1.6e-23 114.4 283 38.5
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.6e-23 114.4 283 38.5
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 3.5e-23 113.2 252 36.1
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 6.5e-22 109.0 106 56.6
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 2.3e-19 100.5 144 43.1
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 6.3e-17 92.4 77 63.6
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 1.8e-16 90.9 172 40.7
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.7e-14 84.3 100 46.0
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.9e-13 80.9 137 43.8
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 1.8e-11 74.3 69 58.0
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 3.0e-11 73.6 272 27.2
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 5.7e-10 69.3 55 63.6
Cre07.g331000 Chlamydomonas reinhardtii HOM05D004212 ORTHO05D005128 9.1e-08 62.0 391 27.4
DCAR_024051 Daucus carota HOM05D004212 ORTHO05D005128 1.3e-06 58.2 63 49.2
TAR636G1337 Trochodendron aralioides HOM05D007866 ORTHO05D003871 5.0e-06 56.2 36 72.2


User provided reference genes

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