Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02995 Eucalyptus grandis HOM05D004233 ORTHO05D003507 1.2e-62 243.0 130 100.0
Potri.016G112700 Populus trichocarpa HOM05D004233 ORTHO05D003507 2.8e-30 135.6 128 62.5
QL07p036016 Quercus lobata HOM05D004233 ORTHO05D003507 1.1e-29 133.7 129 62.8
Ciclev10013109m.g Citrus clementina HOM05D004233 ORTHO05D003507 5.8e-28 127.9 125 60.0
Potri.006G097700 Populus trichocarpa HOM05D004233 ORTHO05D003507 7.5e-28 127.5 128 58.6
Thecc.05G020400 Theobroma cacao HOM05D004233 ORTHO05D003507 7.5e-28 127.5 131 57.3
CiPaw.09G207200 Carya illinoinensis HOM05D004233 ORTHO05D003507 2.9e-27 125.6 129 58.9
Hma1.2p1_0763F.1_g214800 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 2.9e-27 125.6 129 61.2
Cfa017246 Carpinus fangiana HOM05D004233 ORTHO05D003507 6.4e-27 124.4 134 59.7
Manes.09G103100 Manihot esculenta HOM05D004233 ORTHO05D003507 6.4e-27 124.4 128 59.4
Sabra06G0075200 Salix brachista HOM05D004233 ORTHO05D003507 6.4e-27 124.4 128 58.6
PGR004G1616 Punica granatum HOM05D004233 ORTHO05D003507 1.9e-26 122.9 137 60.6
Duzib128G0556 Durio zibethinus HOM05D004233 ORTHO05D003507 5.4e-26 121.3 129 59.7
MELO3C009185.2 Cucumis melo HOM05D004233 ORTHO05D003507 2.7e-25 119.0 128 53.9
Gohir.D09G159300 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.5e-25 118.6 130 55.4
Gorai.006G181000 Gossypium raimondii HOM05D004233 ORTHO05D003507 3.5e-25 118.6 130 55.4
Duzib093G0978 Durio zibethinus HOM05D004233 ORTHO05D003507 4.6e-25 118.2 129 58.1
Gohir.A09G163800 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.3e-24 116.7 130 56.2
Cpa.g.sc163.4 Carica papaya HOM05D004233 ORTHO05D003507 2.3e-24 115.9 128 62.5
ClCG10G021920 Citrullus lanatus HOM05D004233 ORTHO05D003507 2.3e-24 115.9 128 53.9
Duzib106G0630 Durio zibethinus HOM05D004233 ORTHO05D003507 2.3e-24 115.9 126 56.3
Oeu030524.1 Olea europaea HOM05D004233 ORTHO05D003507 2.3e-24 115.9 126 55.6
Prupe.6G271900 Prunus persica HOM05D004233 ORTHO05D003507 5.1e-24 114.8 132 54.5
Sabra16G0108400 Salix brachista HOM05D004233 ORTHO05D003507 5.1e-24 114.8 128 53.1
COL.COLO4_14571 Corchorus olitorius HOM05D004233 ORTHO05D003507 8.6e-24 114.0 134 54.5
Glyma.07G146500 Glycine max HOM05D004233 ORTHO05D003507 8.6e-24 114.0 130 56.2
Glyma.18G197700 Glycine max HOM05D004233 ORTHO05D003507 1.5e-23 113.2 130 55.4
CsaV3_3G034080 Cucumis sativus L. HOM05D004233 ORTHO05D003507 1.9e-23 112.8 128 52.3
Phvul.008G106800 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 7.3e-23 110.9 131 54.2
VMungo1383G3137 Vigna mungo HOM05D004233 ORTHO05D003507 7.3e-23 110.9 131 54.2
MD12G1161500 Malus domestica HOM05D004233 ORTHO05D003507 9.5e-23 110.5 132 51.5
TWI77G0758 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 1.2e-22 110.2 128 53.1
TAR623G0525 Trochodendron aralioides HOM05D004233 ORTHO05D003507 1.6e-22 109.8 130 56.2
Dinv37074 Davidia involucrata HOM05D004233 ORTHO05D003507 4.7e-22 108.2 117 59.0
Glyma.03G078400 Glycine max HOM05D004233 ORTHO05D003507 4.7e-22 108.2 129 48.8
RcHm_v2.0_Chr3g0463681 Rosa chinensis HOM05D004233 ORTHO05D003507 4.7e-22 108.2 133 51.9
Sed0017480 Sechium edule HOM05D004233 ORTHO05D003507 6.2e-22 107.8 126 53.2
TAR369G1066 Trochodendron aralioides HOM05D004233 ORTHO05D003507 8.1e-22 107.5 130 55.4
Glyma.01G113100 Glycine max HOM05D004233 ORTHO05D003507 1.8e-21 106.3 131 47.3
FvH4_6g11920 Fragaria vesca HOM05D004233 ORTHO05D003507 2.4e-21 105.9 136 50.0
FAN02G0664 Fragaria x ananassa HOM05D004233 ORTHO05D003507 2.4e-21 105.9 136 50.0
FAN05G3657 Fragaria x ananassa HOM05D004233 ORTHO05D003507 2.4e-21 105.9 136 50.0
FAN14G3430 Fragaria x ananassa HOM05D004233 ORTHO05D003507 2.4e-21 105.9 136 50.0
FAN14G4547 Fragaria x ananassa HOM05D004233 ORTHO05D003507 2.4e-21 105.9 136 50.0
VMungo0331G0885 Vigna mungo HOM05D004233 ORTHO05D003507 3.1e-21 105.5 131 47.3
MBI06_g42853_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 6.8e-21 104.4 128 48.4
Sed0021305 Sechium edule HOM05D004233 ORTHO05D003507 6.8e-21 104.4 129 49.6
FAN09G0897 Fragaria x ananassa HOM05D004233 ORTHO05D003507 1.2e-20 103.6 136 48.5
Phvul.010G005000 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 3.4e-20 102.1 129 46.5
Nn2g13635 Nelumbo nucifera HOM05D004233 ORTHO05D003507 1.3e-19 100.1 129 50.4
Medtr2g013470 Medicago truncatula HOM05D004233 ORTHO05D003507 2.9e-19 99.0 126 53.2
Phvul.006G186000 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 4.9e-19 98.2 126 52.4
Glyma.15G073400 Glycine max HOM05D004233 ORTHO05D003507 6.4e-19 97.8 123 52.8
Rhsim04G0131700 Rhododendron simsii HOM05D004233 ORTHO05D003507 8.4e-19 97.4 135 51.9
Ca_00329_v3 Cicer arietinum L. HOM05D004233 ORTHO05D003507 1.2e-17 93.6 121 49.6
THA.LOC104823286 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 1.2e-17 93.6 138 52.2
Glyma.13G239800 Glycine max HOM05D004233 ORTHO05D003507 1.6e-17 93.2 123 51.2
Oeu024626.1 Olea europaea HOM05D004233 ORTHO05D003507 1.7e-16 89.7 128 45.3
TPR.G29052 Trifolium pratense HOM05D004233 ORTHO05D003507 2.3e-16 89.4 122 51.6
Atru.chr8.2208 Acer truncatum HOM05D004233 ORTHO05D003507 6.6e-16 87.8 102 57.8
Aqoxy4G02651 Aquilegia oxysepala HOM05D004233 ORTHO05D003507 8.7e-16 87.4 127 44.9
TPR.G1552 Trifolium pratense HOM05D004233 ORTHO05D003507 8.7e-16 87.4 125 48.8
MSTRG.10228 Avicennia marina HOM05D004233 ORTHO05D003507 2.5e-15 85.9 127 45.7
Oeu055173.1 Olea europaea HOM05D004233 ORTHO05D003507 2.5e-15 85.9 120 49.2
Medtr7g067365 Medicago truncatula HOM05D004233 ORTHO05D003507 4.3e-15 85.1 121 48.8
Nn1g02891 Nelumbo nucifera HOM05D004233 ORTHO05D003507 4.3e-15 85.1 130 47.7
Lsat_1_v5_gn_9_35941 Lactuca sativa HOM05D004233 ORTHO05D003507 5.6e-15 84.7 128 47.7
CARHR211560 Cardamine hirsuta HOM05D004233 ORTHO05D003507 7.3e-15 84.3 140 46.4
ClCG04G007170 Citrullus lanatus HOM05D004233 ORTHO05D003507 9.6e-15 84.0 119 51.3
Lalb_Chr03g0043081 Lupinus albus HOM05D004233 ORTHO05D003507 9.6e-15 84.0 124 49.2
Psat3g130680 Pisum sativum HOM05D004233 ORTHO05D003507 9.6e-15 84.0 120 47.5
THA.LOC104816214 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 1.3e-14 83.6 143 49.0
AT5G01225 Arabidopsis thaliana HOM05D004233 ORTHO05D003507 1.6e-14 83.2 134 44.0
Gohir.A01G225900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.1e-14 82.8 89 61.8
Gohir.D01G215600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.1e-14 82.8 89 61.8
Gorai.002G261800 Gossypium raimondii HOM05D004233 ORTHO05D003507 2.1e-14 82.8 89 61.8
arahy.Tifrunner.gnm1.ann1.BL7XQ3 Arachis hypogaea HOM05D004233 ORTHO05D003507 2.8e-14 82.4 119 46.2
Lj6g0009965 Lotus japonicus HOM05D004233 ORTHO05D003507 2.8e-14 82.4 119 47.1
CARHR083380 Cardamine hirsuta HOM05D004233 ORTHO05D003507 8.1e-14 80.9 142 41.5
MBI05_g30571_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 8.1e-14 80.9 107 45.8
CANSAT35G0502 Cannabis sativa HOM05D004233 ORTHO05D003507 1.4e-13 80.1 156 45.5
DCAR_018722 Daucus carota HOM05D004233 ORTHO05D003507 4.0e-13 78.6 132 46.2
Hma1.2p1_0227F.1_g096330 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 1.2e-12 77.0 131 42.0
Rhsim13G0071800 Rhododendron simsii HOM05D004233 ORTHO05D003507 1.2e-12 77.0 131 38.9
MELO3C003231.2 Cucumis melo HOM05D004233 ORTHO05D003507 2.0e-12 76.3 129 45.7
Thhalv10014915m.g Eutrema salsugineum HOM05D004233 ORTHO05D003507 2.0e-12 76.3 152 37.5
Peaxi162Scf00056g00201 Petunia axillaris HOM05D004233 ORTHO05D003507 2.0e-12 76.3 84 54.8
THA.LOC104827043 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 2.6e-12 75.9 139 49.6
AL3G20070 Arabidopsis lyrata HOM05D004233 ORTHO05D003507 3.4e-12 75.5 144 43.8
CsaV3_4G026060 Cucumis sativus L. HOM05D004233 ORTHO05D003507 4.4e-12 75.1 130 44.6
Lalb_Chr13g0291241 Lupinus albus HOM05D004233 ORTHO05D003507 7.6e-12 74.3 103 50.5
A05p39820 Brassica napus HOM05D004233 ORTHO05D003507 2.9e-11 72.4 141 46.1
BraA05t22766Z Brassica rapa HOM05D004233 ORTHO05D003507 2.9e-11 72.4 141 46.1
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 3.8e-11 72.0 127 37.8
DCAR_015449 Daucus carota HOM05D004233 ORTHO05D003507 4.9e-11 71.6 129 45.0
Gohir.D04G129214 Gossypium hirsutum HOM05D004233 ORTHO05D003507 4.9e-11 71.6 114 48.2
Gorai.012G112300 Gossypium raimondii HOM05D004233 ORTHO05D003507 4.9e-11 71.6 114 48.2
Sed0015935 Sechium edule HOM05D004233 ORTHO05D003507 8.4e-11 70.9 122 44.3
A10p33670 Brassica napus HOM05D004233 ORTHO05D003507 1.1e-10 70.5 146 35.6
Lalb_Chr15g0089821 Lupinus albus HOM05D004233 ORTHO05D003507 1.9e-10 69.7 120 38.3
BraA10t45398Z Brassica rapa HOM05D004233 ORTHO05D003507 2.4e-10 69.3 148 35.1
Gohir.A04G088850 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.4e-10 69.3 114 47.4
Nitab4.5_0000102g0150 Nicotiana tabacum HOM05D004233 ORTHO05D003507 2.4e-10 69.3 135 37.8
PSO384G2407 Papaver somniferum HOM05D004233 ORTHO05D003507 2.4e-10 69.3 153 37.3
SalBow4G0303 Salvia bowleyana HOM05D004233 ORTHO05D003507 2.4e-10 69.3 90 52.2
AT3G09032 Arabidopsis thaliana HOM05D004233 ORTHO05D003507 3.2e-10 68.9 146 39.7
DCAR_028820 Daucus carota HOM05D004233 ORTHO05D003507 3.2e-10 68.9 74 58.1
BcaNung07269 Brassica carinata HOM05D004233 ORTHO05D003507 4.2e-10 68.6 146 37.7
PSO339G4028 Papaver somniferum HOM05D004233 ORTHO05D003507 4.2e-10 68.6 152 39.5
AL6G10960 Arabidopsis lyrata HOM05D004233 ORTHO05D003507 9.3e-10 67.4 152 34.9
BolC1t05478H Brassica oleracea HOM05D004233 ORTHO05D003507 9.3e-10 67.4 142 42.3
BraA01t04320Z Brassica rapa HOM05D004233 ORTHO05D003507 9.3e-10 67.4 142 42.3
Sp6g40580 Schrenkiella parvula HOM05D004233 ORTHO05D003507 9.3e-10 67.4 150 36.0
Carub.0003s0817 Capsella rubella HOM05D004233 ORTHO05D003507 1.2e-09 67.0 142 38.7
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 1.2e-09 67.0 107 41.1
Duzib150G0257 Durio zibethinus HOM05D004233 ORTHO05D003507 1.2e-09 67.0 128 41.4
BcaC09g48049 Brassica carinata HOM05D004233 ORTHO05D003507 2.7e-09 65.9 140 39.3
C09p74580 Brassica napus HOM05D004233 ORTHO05D003507 3.5e-09 65.5 146 36.3
Thhalv10022307m.g Eutrema salsugineum HOM05D004233 ORTHO05D003507 3.5e-09 65.5 142 41.5
Sp3g07460 Schrenkiella parvula HOM05D004233 ORTHO05D003507 3.5e-09 65.5 143 40.6
Migut.L01999 Erythranthe guttata HOM05D004233 ORTHO05D003507 4.6e-09 65.1 138 41.3
C05p58860 Brassica napus HOM05D004233 ORTHO05D003507 6.0e-09 64.7 140 42.9
BolC5t34538H Brassica oleracea HOM05D004233 ORTHO05D003507 6.0e-09 64.7 140 42.9
BcaC09g48004 Brassica carinata HOM05D004233 ORTHO05D003507 7.8e-09 64.3 143 41.3
BcaNung06802 Brassica carinata HOM05D004233 ORTHO05D003507 1.3e-08 63.5 146 35.6
BolC9t60190H Brassica oleracea HOM05D004233 ORTHO05D003507 1.3e-08 63.5 146 35.6
BcaC06g31968 Brassica carinata HOM05D004233 ORTHO05D003507 2.3e-08 62.8 153 35.9
Sopen09g007170 Solanum pennellii HOM05D004233 ORTHO05D003507 2.3e-08 62.8 134 42.5
PGSC0003DMG400004152 Solanum tuberosum HOM05D004233 ORTHO05D003507 2.3e-08 62.8 103 42.7
BcaC05g29637 Brassica carinata HOM05D004233 ORTHO05D003507 3.0e-08 62.4 140 42.1
Carub.0006s0066 Capsella rubella HOM05D004233 ORTHO05D003507 5.1e-08 61.6 146 36.3
Nn2g11404 Nelumbo nucifera HOM05D004233 ORTHO05D003507 5.1e-08 61.6 128 38.3
DCAR_024028 Daucus carota HOM05D004233 ORTHO05D003507 6.6e-08 61.2 60 66.7
Ca_05588_v3 Cicer arietinum L. HOM05D010371 ORTHO05D003507 1.1e-07 60.5 113 35.4
Solyc06g006090.1 Solanum lycopersicum HOM05D004233 ORTHO05D003507 1.1e-07 60.5 103 40.8
TPR.G24023 Trifolium pratense HOM05D010371 ORTHO05D003507 1.1e-07 60.5 113 36.3
Gohir.D07G106900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.5e-07 60.1 88 46.6
CAN.G780.3 Capsicum annuum HOM05D004233 ORTHO05D003507 2.5e-07 59.3 103 39.8
Haze_24266 Corylus avellana HOM05D004233 ORTHO05D003507 3.3e-07 58.9 108 41.7
SalBow4G1886 Salvia bowleyana HOM05D004233 ORTHO05D003507 4.3e-07 58.5 87 48.3
Gohir.A07G102900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 5.6e-07 58.2 88 46.6
Gorai.001G115000 Gossypium raimondii HOM05D004233 ORTHO05D003507 5.6e-07 58.2 88 45.5
Medtr5g069980 Medicago truncatula HOM05D010371 ORTHO05D003507 5.6e-07 58.2 94 40.4
Sopen06g002040 Solanum pennellii HOM05D004233 ORTHO05D003507 5.6e-07 58.2 103 39.8
Glyma.11G176100 Glycine max HOM05D010371 ORTHO05D003507 1.3e-06 57.0 99 41.4
Gohir.D05G090600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.3e-06 57.0 106 41.5
Gorai.009G093100 Gossypium raimondii HOM05D004233 ORTHO05D003507 1.3e-06 57.0 106 41.5
Psat2g059280 Pisum sativum HOM05D010371 ORTHO05D003507 1.6e-06 56.6 105 36.2
Potri.001G249500 Populus trichocarpa HOM05D004233 ORTHO05D003507 1.6e-06 56.6 87 48.3
Gohir.A05G089700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.1e-06 56.2 106 41.5
Phvul.008G262500 Phaseolus vulgaris HOM05D010371 ORTHO05D003507 2.8e-06 55.8 118 33.9
Glyma.02G225600 Glycine max HOM05D010371 ORTHO05D003507 4.8e-06 55.1 118 33.1
Sp1g06050 Schrenkiella parvula HOM05D005325 ORTHO05D003507 4.8e-06 55.1 130 30.8
Lsat_1_v5_gn_9_20140 Lactuca sativa HOM05D004233 ORTHO05D003507 6.2e-06 54.7 108 38.9
LjContig00155g0017503 Lotus japonicus HOM05D010371 ORTHO05D003507 6.2e-06 54.7 119 32.8


User provided reference genes

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