Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 5.7e-297 1023.5 509 100.0
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 8.4e-216 753.8 514 73.2
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 1.6e-214 749.6 515 73.2
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 7.9e-214 747.3 510 72.9
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 1.8e-213 746.1 508 72.4
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 6.7e-213 744.2 509 72.5
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 1.9e-212 742.7 509 73.5
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 5.6e-212 741.1 510 72.4
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 9.6e-212 740.3 507 73.0
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 1.3e-211 740.0 509 73.1
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 4.8e-211 738.0 507 73.0
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 4.8e-211 738.0 510 72.0
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 6.2e-211 737.6 509 72.1
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 1.8e-210 736.1 510 72.5
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 2.4e-210 735.7 510 72.2
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 3.1e-210 735.3 514 72.0
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 4.0e-210 734.9 509 72.5
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 1.2e-209 733.4 509 72.5
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.6e-209 732.3 512 71.5
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 4.5e-209 731.5 510 71.4
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 5.8e-209 731.1 508 72.2
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.3e-208 729.9 510 72.7
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 2.2e-208 729.2 509 70.9
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 2.9e-208 728.8 514 70.4
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.1e-207 726.9 514 70.2
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 1.4e-207 726.5 510 70.6
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 1.9e-207 726.1 509 70.1
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 3.2e-207 725.3 509 70.1
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 2.7e-206 722.2 507 70.8
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.7e-206 722.2 510 70.2
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 6.0e-206 721.1 509 70.3
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.8e-205 719.5 514 70.6
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 3.9e-205 718.4 506 71.1
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 6.7e-205 717.6 507 71.4
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 2.5e-204 715.7 513 70.4
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 4.3e-204 714.9 510 71.0
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 5.7e-204 714.5 513 70.6
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 7.4e-204 714.1 514 70.6
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.1e-202 710.3 548 66.6
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 1.8e-202 709.5 508 69.5
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 6.9e-202 707.6 509 69.9
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 1.2e-201 706.8 510 69.8
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 2.9e-200 702.2 510 69.8
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 3.8e-200 701.8 548 65.7
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 5.0e-200 701.4 548 65.5
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 5.0e-200 701.4 508 68.7
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.1e-199 700.3 498 71.9
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 1.4e-199 699.9 513 69.4
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 1.9e-199 699.5 510 68.8
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 1.9e-199 699.5 511 69.5
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 5.5e-199 698.0 513 69.4
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 1.6e-198 696.4 514 69.5
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 2.1e-198 696.0 513 67.1
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 1.0e-197 693.7 504 68.5
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 1.4e-197 693.3 508 68.1
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.8e-197 693.0 509 69.9
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 8.8e-197 690.6 509 69.7
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 3.3e-196 688.7 502 68.1
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 4.3e-196 688.3 509 67.4
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 9.7e-196 687.2 476 72.1
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 1.7e-195 686.4 509 67.6
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 3.7e-195 685.3 504 67.7
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 3.7e-195 685.3 509 67.0
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 3.7e-195 685.3 509 67.0
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 4.8e-195 684.9 509 67.6
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.8e-195 684.9 501 69.1
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 6.3e-195 684.5 474 73.4
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 8.2e-195 684.1 509 67.8
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 1.1e-194 683.7 510 67.5
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.1e-194 683.7 507 68.0
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.1e-194 683.7 501 69.1
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 1.8e-194 682.9 509 67.8
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 3.1e-194 682.2 509 66.6
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 4.1e-194 681.8 505 67.9
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 5.3e-194 681.4 509 67.4
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 1.2e-193 680.2 510 66.9
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 1.2e-193 680.2 512 67.8
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 1.2e-193 680.2 507 67.7
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 2.0e-193 679.5 510 67.1
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 2.0e-193 679.5 477 70.4
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 2.6e-193 679.1 509 67.0
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.6e-193 679.1 601 60.4
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 4.5e-193 678.3 509 67.2
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 4.5e-193 678.3 517 66.3
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 5.9e-193 677.9 513 67.6
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 1.7e-192 676.4 510 66.7
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 1.7e-192 676.4 509 67.0
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 1.7e-192 676.4 510 66.7
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 2.2e-192 676.0 510 67.5
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 6.5e-192 674.5 510 65.5
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 6.5e-192 674.5 474 71.5
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 2.5e-191 672.5 512 66.0
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 4.2e-191 671.8 525 65.1
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 1.6e-190 669.8 452 74.8
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 6.1e-190 667.9 514 66.9
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.8e-189 666.4 502 67.1
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.8e-186 656.4 483 68.3
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 9.1e-186 654.1 509 67.0
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.5e-185 653.3 509 66.8
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 4.5e-185 651.7 512 65.6
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 4.5e-185 651.7 508 65.4
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 7.7e-185 651.0 587 58.8
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 1.3e-184 650.2 460 70.4
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 1.7e-184 649.8 510 63.9
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.4e-183 646.7 510 63.9
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.9e-183 646.4 534 64.2
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 3.0e-181 639.0 567 60.3
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 6.7e-181 637.9 499 64.9
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 2.0e-180 636.3 530 63.2
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.6e-180 636.0 509 64.8
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 1.3e-179 633.6 513 65.5
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 1.7e-179 633.3 514 64.4
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 6.3e-179 631.3 509 65.6
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 9.1e-178 627.5 510 61.8
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 1.2e-177 627.1 511 63.4
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 2.0e-177 626.3 449 69.5
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.0e-176 621.7 528 62.5
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 7.2e-175 617.8 502 63.1
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.3e-171 607.1 499 62.1
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 2.2e-171 606.3 472 65.9
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 8.2e-171 604.4 459 66.4
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 5.5e-167 591.7 509 61.1
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 7.0e-162 574.7 403 71.2
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 1.3e-160 570.5 404 70.8
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 7.5e-148 528.1 525 53.1
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 4.1e-146 522.3 544 52.0
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 2.7e-145 519.6 474 59.3
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 2.3e-144 516.5 663 46.6
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 8.0e-142 508.1 453 58.5
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 4.0e-133 479.2 416 58.7
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 2.0e-124 450.3 338 66.9
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 3.3e-119 433.0 446 54.3
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.7e-107 394.0 273 71.1
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 3.0e-104 383.3 271 72.3
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 4.9e-99 365.9 279 66.7
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.5e-79 301.2 214 66.8
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 2.5e-79 300.4 243 64.6
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 4.3e-79 299.7 242 62.0
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 5.5e-74 282.7 219 67.1
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 4.7e-73 279.6 253 58.1
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 3.7e-70 270.0 581 32.5
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 3.5e-68 263.5 499 36.7
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 6.3e-54 216.1 396 34.8
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 4.9e-38 163.3 135 61.5
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.9e-36 156.4 188 46.8
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 1.6e-33 148.3 106 69.8
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 2.1e-33 147.9 114 64.9
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.1e-32 144.1 251 40.2
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 8.9e-32 142.5 251 39.8
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.5e-31 141.7 183 40.4
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.5e-31 141.7 121 62.0
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 1.1e-26 125.6 68 83.8
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.4e-23 113.6 80 73.8
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 1.9e-18 98.2 73 68.5
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 6.4e-14 83.2 190 26.8
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 4.6e-12 77.0 113 45.1
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 2.8e-09 67.8 243 24.3
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 2.8e-09 67.8 77 51.9
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 8.1e-09 66.2 62 58.1
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 4.4e-07 60.5 36 75.0
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 4.4e-07 60.5 74 41.9
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 8.4e-06 56.2 124 28.2


User provided reference genes

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