Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 1.6e-181 639.4 342 100.0
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 1.8e-89 333.6 333 58.6
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 2.6e-80 303.1 332 53.3
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 1.6e-77 293.9 312 52.2
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 2.7e-77 293.1 334 51.8
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 3.6e-77 292.7 351 51.3
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 3.0e-76 289.7 332 53.6
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 3.9e-76 289.3 332 53.0
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 2.0e-75 287.0 315 52.1
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 2.8e-74 283.1 333 50.8
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 3.7e-74 282.7 360 48.6
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 6.3e-74 282.0 315 51.4
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 3.1e-73 279.6 333 51.7
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 3.5e-72 276.2 309 51.8
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 1.1e-70 271.2 338 50.0
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 1.1e-70 271.2 332 50.3
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.9e-70 270.4 327 49.2
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 2.5e-70 270.0 334 50.3
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 3.2e-70 269.6 371 46.9
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 5.5e-70 268.9 333 49.8
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 1.6e-69 267.3 328 49.7
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.6e-69 267.3 315 48.6
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 2.1e-69 266.9 331 49.5
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 2.1e-69 266.9 333 49.5
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 3.6e-69 266.2 335 49.9
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 6.1e-69 265.4 334 48.5
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 5.2e-68 262.3 313 49.2
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 8.8e-68 261.5 334 48.2
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.2e-67 261.2 315 47.9
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 1.2e-67 261.2 335 49.0
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.0e-67 260.4 315 47.6
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 2.6e-67 260.0 328 50.3
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 7.5e-67 258.5 332 48.8
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.7e-66 257.3 322 48.4
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 1.7e-66 257.3 327 48.9
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 1.4e-65 254.2 339 47.2
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 5.3e-65 252.3 323 47.4
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 9.1e-65 251.5 334 49.1
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 1.6e-64 250.8 331 46.8
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 1.6e-64 250.8 335 48.1
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.6e-64 250.8 336 46.1
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 3.5e-64 249.6 362 45.3
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 7.7e-64 248.4 322 47.8
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 1.7e-63 247.3 334 45.8
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 1.7e-63 247.3 332 46.4
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 3.8e-63 246.1 335 47.8
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 6.5e-63 245.4 333 45.3
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 8.5e-63 245.0 341 46.6
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.5e-62 244.2 332 46.4
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 2.7e-61 240.0 326 47.5
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 4.7e-61 239.2 326 45.1
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 1.0e-60 238.0 327 45.6
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 1.0e-60 238.0 326 44.2
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 2.3e-60 236.9 326 43.3
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 4.0e-60 236.1 326 44.5
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 4.0e-60 236.1 332 47.0
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 4.0e-60 236.1 329 44.1
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 2.6e-59 233.4 346 46.2
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 2.6e-59 233.4 335 46.0
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.3e-58 231.1 337 44.8
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 1.7e-58 230.7 351 44.4
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 2.2e-58 230.3 333 44.7
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 3.7e-58 229.6 339 44.0
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 1.1e-57 228.0 332 44.0
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 3.1e-57 226.5 331 44.1
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 5.4e-57 225.7 332 44.3
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 5.4e-57 225.7 336 43.8
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 7.0e-57 225.3 336 44.9
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 1.6e-56 224.2 366 41.8
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 3.5e-56 223.0 332 46.1
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 5.9e-56 222.2 334 43.7
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 1.0e-55 221.5 327 44.6
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 1.0e-55 221.5 319 44.5
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 2.9e-55 219.9 329 44.4
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 1.1e-54 218.0 335 41.5
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.5e-54 217.6 260 48.1
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 3.3e-54 216.5 330 42.4
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 5.5e-54 215.7 287 45.6
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 9.5e-54 214.9 336 42.3
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 9.5e-54 214.9 332 43.4
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 1.2e-53 214.5 343 42.0
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 2.1e-53 213.8 336 43.2
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 3.6e-53 213.0 334 40.4
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 4.7e-53 212.6 337 43.0
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 4.0e-52 209.5 333 44.1
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 3.4e-51 206.5 351 40.2
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 4.4e-51 206.1 334 43.1
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 5.7e-51 205.7 299 42.8
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 1.3e-50 204.5 338 41.7
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.8e-50 203.4 322 42.2
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 4.9e-50 202.6 313 40.9
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 4.9e-50 202.6 308 40.9
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 6.3e-50 202.2 255 48.2
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 1.1e-49 201.4 286 46.2
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 1.4e-49 201.1 336 40.5
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 1.4e-49 201.1 339 39.8
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 1.8e-49 200.7 334 39.5
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 3.1e-49 199.9 318 40.3
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 2.0e-48 197.2 351 40.2
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 2.7e-48 196.8 332 39.2
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 2.7e-48 196.8 337 40.7
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 4.5e-48 196.1 254 44.9
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 7.8e-48 195.3 334 39.5
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 1.7e-47 194.1 334 37.4
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 1.7e-47 194.1 334 37.4
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 2.3e-47 193.7 334 38.6
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 2.9e-47 193.4 334 37.4
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 4.3e-46 189.5 338 39.6
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 9.5e-46 188.3 330 38.2
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 1.2e-45 188.0 341 38.4
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 8.0e-45 185.3 334 37.1
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 8.0e-45 185.3 335 37.0
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 1.0e-44 184.9 335 36.4
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 1.4e-44 184.5 263 44.9
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 1.8e-44 184.1 318 38.7
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 1.8e-44 184.1 263 44.9
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 4.4e-43 179.5 282 40.4
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 7.5e-43 178.7 330 37.3
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.3e-42 177.9 314 38.9
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 1.3e-42 177.9 250 44.4
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 3.7e-42 176.4 336 37.5
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 3.5e-40 169.9 259 39.8
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 4.6e-40 169.5 215 47.9
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 3.9e-39 166.4 218 46.8
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 6.8e-36 155.6 274 34.7
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 9.2e-33 145.2 278 38.8
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 1.6e-32 144.4 312 34.0
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 1.5e-30 137.9 341 32.3
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 1.6e-29 134.4 255 33.3
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 6.2e-29 132.5 331 32.0
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 6.2e-29 132.5 238 34.5
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 8.1e-29 132.1 281 30.6
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 1.1e-28 131.7 253 36.0
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 5.2e-28 129.4 145 47.6
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 6.8e-28 129.0 334 31.7
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.4e-25 120.6 163 41.7
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 1.7e-23 114.4 148 47.3
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 2.1e-21 107.5 134 44.0
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 1.8e-20 104.4 214 36.4
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 1.2e-16 91.7 96 57.3
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 3.0e-15 87.0 210 31.0
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 8.7e-15 85.5 276 29.0
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 8.7e-15 85.5 72 59.7
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 5.6e-14 82.8 259 29.3
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 1.4e-12 78.2 224 26.8
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 1.5e-11 74.7 224 29.9
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 1.2e-08 65.1 105 41.9
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 2.7e-08 63.9 227 24.7
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 4.6e-08 63.2 78 43.6
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 6.0e-08 62.8 251 25.5
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 1.0e-07 62.0 220 25.9
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.3e-07 61.6 201 22.4


User provided reference genes

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