Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02754 Eucalyptus grandis HOM05D011481 ORTHO05D009878 1.7e-86 322.8 176 100.0
CiPaw.12G036100 Carya illinoinensis HOM05D008121 ORTHO05D009878 4.3e-18 95.5 185 38.4
Haze_07274 Corylus avellana HOM05D008121 ORTHO05D009878 5.6e-18 95.1 189 38.1
Potri.015G091100 Populus trichocarpa HOM05D008121 ORTHO05D009878 5.6e-18 95.1 186 37.6
PGR044G1447 Punica granatum HOM05D011481 ORTHO05D009878 4.8e-17 92.0 172 38.4
CiPaw.11G011700 Carya illinoinensis HOM05D008121 ORTHO05D009878 1.5e-15 87.0 182 35.2
FvH4_5g07590 Fragaria vesca HOM05D008121 ORTHO05D009878 3.8e-14 82.4 195 35.9
Sabra15G0113100 Salix brachista HOM05D000290 ORTHO05D004630 3.8e-14 82.4 187 36.4
RcHm_v2.0_Chr7g0190901 Rosa chinensis HOM05D008121 ORTHO05D009878 6.4e-14 81.6 186 35.5
Atru.chr9.1017 Acer truncatum HOM05D008121 ORTHO05D009878 1.4e-13 80.5 177 35.6
FAN04G1418 Fragaria x ananassa HOM05D000290 ORTHO05D004630 1.9e-13 80.1 182 36.3
Cfa018889 Carpinus fangiana HOM05D008121 ORTHO05D009878 4.2e-13 79.0 194 34.0
ClCG03G003530 Citrullus lanatus HOM05D008121 ORTHO05D009878 7.1e-13 78.2 189 35.4
MD06G1149100 Malus domestica HOM05D008121 ORTHO05D009878 3.5e-12 75.9 192 30.7
Prupe.5G156300 Prunus persica HOM05D008121 ORTHO05D009878 7.9e-12 74.7 194 33.0
CsaV3_1G009340 Cucumis sativus L. HOM05D008121 ORTHO05D009878 1.3e-11 73.9 183 36.1
TWI14G0571 Tripterygium wilfordii HOM05D008121 ORTHO05D009878 1.3e-11 73.9 161 35.4
Hma1.2p1_0014F.1_g009910 Hydrangea macrophylla HOM05D008121 ORTHO05D009878 1.8e-11 73.6 143 37.1
QL10p005006 Quercus lobata HOM05D008121 ORTHO05D009878 1.8e-11 73.6 191 35.6
FAN08G2628 Fragaria x ananassa HOM05D000290 ORTHO05D004630 3.9e-11 72.4 154 37.0
Duzib205G1258 Durio zibethinus HOM05D008121 ORTHO05D009878 6.7e-11 71.6 185 37.3
CSS0015443 Camellia sinensis var. sinensis HOM05D008121 ORTHO05D009878 1.5e-10 70.5 158 34.8
Cpa.g.sc4.77 Carica papaya HOM05D008121 ORTHO05D009878 3.3e-10 69.3 164 34.8
GSVIVG01007536001 Vitis vinifera HOM05D008121 ORTHO05D009878 5.6e-10 68.6 163 34.4
MSTRG.22918 Avicennia marina HOM05D008121 ORTHO05D009878 9.6e-10 67.8 164 34.1
vmacro19236 Vaccinium macrocarpon HOM05D008121 ORTHO05D009878 1.3e-09 67.4 164 34.8
Actinidia25609 Actinidia chinensis HOM05D008121 ORTHO05D009878 4.8e-09 65.5 166 36.1
Thecc.03G123300 Theobroma cacao HOM05D008121 ORTHO05D009878 6.2e-09 65.1 163 38.0
BcaC07g39334 Brassica carinata HOM05D011481 ORTHO05D009878 1.1e-08 64.3 62 58.1
C08p23500 Brassica napus HOM05D011481 ORTHO05D009878 1.1e-08 64.3 62 58.1
BolC8t49978H Brassica oleracea HOM05D011481 ORTHO05D009878 1.1e-08 64.3 62 58.1
AT3G48490 Arabidopsis thaliana HOM05D011481 ORTHO05D009878 1.4e-08 63.9 148 37.8
Duzib084G1233 Durio zibethinus HOM05D008121 ORTHO05D009878 1.4e-08 63.9 171 31.6
A06p19190 Brassica napus HOM05D011481 ORTHO05D009878 4.0e-08 62.4 62 56.5
BraA06t25002Z Brassica rapa HOM05D011481 ORTHO05D009878 4.0e-08 62.4 62 56.5
THA.LOC104821506 Tarenaya hassleriana HOM05D011481 ORTHO05D009878 4.0e-08 62.4 144 33.3
AL5G27920 Arabidopsis lyrata HOM05D011481 ORTHO05D009878 5.3e-08 62.0 143 35.0
BcaB01g00807 Brassica carinata HOM05D011481 ORTHO05D009878 6.9e-08 61.6 62 54.8
Carub.0005s1467 Capsella rubella HOM05D011481 ORTHO05D009878 9.0e-08 61.2 43 69.8
Gohir.D09G246100 Gossypium hirsutum HOM05D008121 ORTHO05D009878 9.0e-08 61.2 177 33.9
Manes.14G055100 Manihot esculenta HOM05D008121 ORTHO05D009878 9.0e-08 61.2 184 30.4
arahy.Tifrunner.gnm1.ann1.YZZN9M Arachis hypogaea HOM05D008121 ORTHO05D009878 1.2e-07 60.8 144 37.5
Migut.I00480 Erythranthe guttata HOM05D008121 ORTHO05D009878 1.2e-07 60.8 158 36.1
arahy.Tifrunner.gnm1.ann1.DV5N5R Arachis hypogaea HOM05D008121 ORTHO05D009878 2.0e-07 60.1 142 35.9
Thhalv10011023m.g Eutrema salsugineum HOM05D011481 ORTHO05D009878 2.0e-07 60.1 61 55.7
Aa31LG4G17080 Aethionema arabicum HOM05D011481 ORTHO05D009878 2.6e-07 59.7 43 67.4
MELO3C002337.2 Cucumis melo HOM05D008121 ORTHO05D009878 2.6e-07 59.7 138 37.0
Medtr4g104040 Medicago truncatula HOM05D008121 ORTHO05D009878 3.4e-07 59.3 175 31.4
SGA_v2.0_scaffold161G37821 Striga asiatica HOM05D008121 ORTHO05D009878 3.4e-07 59.3 150 35.3
Gorai.006G270600 Gossypium raimondii HOM05D008121 ORTHO05D009878 4.5e-07 58.9 177 33.3
Sed0025515 Sechium edule HOM05D008121 ORTHO05D009878 5.8e-07 58.5 180 31.7
Sopen03g030170 Solanum pennellii HOM05D008121 ORTHO05D009878 7.6e-07 58.2 181 28.2
Ciclev10023121m.g Citrus clementina HOM05D008121 ORTHO05D009878 1.7e-06 57.0 59 55.9
Ciclev10024026m.g Citrus clementina HOM05D008121 ORTHO05D009878 1.7e-06 57.0 59 55.9
COL.COLO4_03517 Corchorus olitorius HOM05D008121 ORTHO05D009878 2.2e-06 56.6 175 32.0
Rhsim08G0185200 Rhododendron simsii HOM05D000290 ORTHO05D004630 2.9e-06 56.2 165 31.5
ECA232G1254 Erigeron canadensis HOM05D008121 ORTHO05D009878 3.8e-06 55.8 139 32.4
Solyc03g110980.4 Solanum lycopersicum HOM05D008121 ORTHO05D009878 3.8e-06 55.8 181 27.6
Lj4g0024363 Lotus japonicus HOM05D008121 ORTHO05D009878 6.4e-06 55.1 145 33.1
Phvul.003G208400 Phaseolus vulgaris HOM05D008121 ORTHO05D009878 6.4e-06 55.1 142 33.8


User provided reference genes

Program Settings