Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02633 Eucalyptus grandis HOM05D007643 ORTHO05D007801 2.9e-65 251.9 144 100.0
CiPaw.15G116100 Carya illinoinensis HOM05D007643 ORTHO05D007801 4.3e-32 141.7 109 65.1
CsaV3_1G003240 Cucumis sativus L. HOM05D007643 ORTHO05D007801 1.2e-31 140.2 149 52.3
ClCG06G015360 Citrullus lanatus HOM05D007643 ORTHO05D007801 3.6e-31 138.7 149 51.0
Thecc.03G110800 Theobroma cacao HOM05D007643 ORTHO05D007801 1.1e-30 137.1 144 55.6
Sed0015671 Sechium edule HOM05D007643 ORTHO05D007801 2.4e-30 136.0 147 52.4
Duzib068G1429 Durio zibethinus HOM05D007643 ORTHO05D007801 4.0e-30 135.2 159 51.6
Prupe.5G211300 Prunus persica HOM05D007643 ORTHO05D007801 7.6e-29 131.0 162 49.4
MELO3C017259.2 Cucumis melo HOM05D007643 ORTHO05D007801 2.9e-28 129.0 97 64.9
FAN18G4512 Fragaria x ananassa HOM05D007643 ORTHO05D007801 4.9e-28 128.3 158 53.2
QL10p021414 Quercus lobata HOM05D007643 ORTHO05D007801 8.4e-28 127.5 130 53.8
Gohir.D11G038100 Gossypium hirsutum HOM05D007643 ORTHO05D007801 5.4e-27 124.8 109 61.5
Gorai.007G040800 Gossypium raimondii HOM05D007643 ORTHO05D007801 1.2e-26 123.6 109 60.6
RcHm_v2.0_Chr7g0183911 Rosa chinensis HOM05D007643 ORTHO05D007801 1.6e-26 123.2 158 48.1
PGR044G0452 Punica granatum HOM05D007643 ORTHO05D007801 2.1e-26 122.9 143 49.7
COL.COLO4_28832 Corchorus olitorius HOM05D007643 ORTHO05D007801 2.7e-26 122.5 143 52.4
FAN08G1142 Fragaria x ananassa HOM05D007643 ORTHO05D007801 3.5e-26 122.1 156 48.1
Ciclev10022625m.g Citrus clementina HOM05D007643 ORTHO05D007801 4.6e-26 121.7 109 56.0
Dinv36824 Davidia involucrata HOM05D007643 ORTHO05D007801 4.6e-26 121.7 102 57.8
MD14G1217500 Malus domestica HOM05D007643 ORTHO05D007801 1.0e-25 120.6 136 50.7
Cfa019854 Carpinus fangiana HOM05D007643 ORTHO05D007801 3.0e-25 119.0 111 56.8
Actinidia18967 Actinidia chinensis HOM05D007643 ORTHO05D007801 8.7e-25 117.5 110 50.9
Actinidia35057 Actinidia chinensis HOM05D007643 ORTHO05D007801 8.7e-25 117.5 107 51.4
CANSAT11G0293 Cannabis sativa HOM05D007643 ORTHO05D007801 1.1e-24 117.1 90 66.7
Dinv38625 Davidia involucrata HOM05D007643 ORTHO05D007801 1.9e-24 116.3 95 60.0
MD06G1206900 Malus domestica HOM05D007643 ORTHO05D007801 4.3e-24 115.2 154 49.4
Rhsim12G0146900 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.7e-23 111.7 106 50.9
Potri.012G065400 Populus trichocarpa HOM05D007643 ORTHO05D007801 3.1e-22 109.0 91 61.5
Atru.chr9.639 Acer truncatum HOM05D007643 ORTHO05D007801 4.0e-22 108.6 90 60.0
Lalb_Chr23g0273871 Lupinus albus HOM05D007643 ORTHO05D007801 4.0e-22 108.6 107 48.6
Gohir.A12G184500 Gossypium hirsutum HOM05D007643 ORTHO05D007801 5.2e-22 108.2 93 54.8
TWI15G0080 Tripterygium wilfordii HOM05D007643 ORTHO05D007801 1.5e-21 106.7 138 44.9
Gohir.D12G187200 Gossypium hirsutum HOM05D007643 ORTHO05D007801 2.0e-21 106.3 93 53.8
Sabra12G0046800 Salix brachista HOM05D007643 ORTHO05D007801 2.6e-21 105.9 91 59.3
Gorai.008G200700 Gossypium raimondii HOM05D007643 ORTHO05D007801 4.4e-21 105.1 93 53.8
TWI81G0573 Tripterygium wilfordii HOM05D007643 ORTHO05D007801 4.4e-21 105.1 94 57.4
vmacro16469 Vaccinium macrocarpon HOM05D007643 ORTHO05D007801 4.4e-21 105.1 141 45.4
PSO782G0046 Papaver somniferum HOM05D007643 ORTHO05D007801 7.6e-21 104.4 108 50.9
Glyma.06G180500 Glycine max HOM05D007643 ORTHO05D007801 1.7e-20 103.2 107 48.6
PSO063G2669 Papaver somniferum HOM05D007643 ORTHO05D007801 2.2e-20 102.8 108 50.0
Manes.14G090200 Manihot esculenta HOM05D007643 ORTHO05D007801 8.4e-20 100.9 81 59.3
Glyma.04G185600 Glycine max HOM05D007643 ORTHO05D007801 2.4e-19 99.4 139 41.7
GSVIVG01008172001 Vitis vinifera HOM05D007643 ORTHO05D007801 3.2e-19 99.0 113 52.2
Phvul.009G176200 Phaseolus vulgaris HOM05D007643 ORTHO05D007801 4.2e-19 98.6 142 41.5
TPR.G15310 Trifolium pratense HOM05D007643 ORTHO05D007801 1.2e-18 97.1 103 48.5
THA.LOC104800981 Tarenaya hassleriana HOM05D007643 ORTHO05D007801 1.6e-18 96.7 102 52.0
THA.LOC104818362 Tarenaya hassleriana HOM05D007643 ORTHO05D007801 3.5e-18 95.5 87 54.0
Aa31LG11G2440 Aethionema arabicum HOM05D007643 ORTHO05D007801 4.6e-18 95.1 103 47.6
CSS0044770 Camellia sinensis var. sinensis HOM05D007643 ORTHO05D007801 1.7e-17 93.2 91 51.6
arahy.Tifrunner.gnm1.ann1.Z569TI Arachis hypogaea HOM05D007643 ORTHO05D007801 3.9e-17 92.0 146 42.5
Lj1g0019261 Lotus japonicus HOM05D007643 ORTHO05D007801 6.6e-17 91.3 149 39.6
ATR0691G209 Amborella trichopoda HOM05D007643 ORTHO05D007801 9.6e-16 87.4 105 43.8
Medtr2g059060 Medicago truncatula HOM05D007643 ORTHO05D007801 1.6e-15 86.7 144 38.2
Nitab4.5_0000646g0290 Nicotiana tabacum HOM05D007643 ORTHO05D007801 2.8e-15 85.9 94 45.7
Nitab4.5_0002805g0050 Nicotiana tabacum HOM05D007643 ORTHO05D007801 2.8e-15 85.9 94 46.8
CDE02G0802 Ceratophyllum demersum HOM05D007643 ORTHO05D007801 3.6e-15 85.5 75 54.7
Peaxi162Scf00017g03267 Petunia axillaris HOM05D007643 ORTHO05D007801 6.2e-15 84.7 91 47.3
Ca_26376_v3 Cicer arietinum L. HOM05D007643 ORTHO05D007801 8.1e-15 84.3 109 42.2
Manes.06G079602 Manihot esculenta HOM05D007643 ORTHO05D007801 4.0e-14 82.0 85 50.6
Oeu059396.1 Olea europaea HOM05D007643 ORTHO05D007801 6.9e-14 81.3 95 46.3
Psat1g029200 Pisum sativum HOM05D007643 ORTHO05D007801 6.9e-14 81.3 108 44.4
CAN.G982.32 Capsicum annuum HOM05D007643 ORTHO05D007801 9.0e-14 80.9 107 41.1
Aqoxy3G03786 Aquilegia oxysepala HOM05D007643 ORTHO05D007801 2.0e-13 79.7 104 47.1
Cc04_g08010 Coffea canephora HOM05D007643 ORTHO05D007801 2.0e-13 79.7 107 44.9
Thhalv10004975m.g Eutrema salsugineum HOM05D010173 ORTHO05D007801 9.9e-13 77.4 61 57.4
HPP92_019460 Vanilla planifolia HOM05D007643 ORTHO05D007801 9.9e-13 77.4 80 48.8
Nn3g17593 Nelumbo nucifera HOM05D007643 ORTHO05D007801 1.7e-12 76.6 64 59.4
Sp2g24160 Schrenkiella parvula HOM05D010173 ORTHO05D007801 1.7e-12 76.6 93 47.3
AUR62032152 Chenopodium quinoa HOM05D007643 ORTHO05D007801 6.4e-12 74.7 98 45.9
Os09g0473966 Oryza sativa ssp. japonica HOM05D007643 ORTHO05D007801 1.1e-11 73.9 84 48.8
Migut.G00548 Erythranthe guttata HOM05D007643 ORTHO05D007801 1.4e-11 73.6 111 40.5
SEGI_00634 Sequoiadendron giganteum HOM05D007643 ORTHO05D007801 1.4e-11 73.6 95 45.3
MSTRG.9860 Avicennia marina HOM05D007643 ORTHO05D007801 1.9e-11 73.2 93 41.9
Sopen03g033740 Solanum pennellii HOM05D007643 ORTHO05D007801 2.4e-11 72.8 92 42.4
Lsat_1_v5_gn_4_112541 Lactuca sativa HOM05D007643 ORTHO05D007801 5.4e-11 71.6 110 40.9
Nitab4.5_0004190g0030 Nicotiana tabacum HOM05D007643 ORTHO05D007801 7.1e-11 71.2 92 43.5
unitig_746.g26846 Utricularia gibba HOM05D007643 ORTHO05D007801 1.2e-10 70.5 80 43.8
MSTRG.4170 Avicennia marina HOM05D007643 ORTHO05D007801 2.1e-10 69.7 91 41.8
AUR62039686 Chenopodium quinoa HOM05D007643 ORTHO05D007801 2.1e-10 69.7 100 45.0
Haze_18546 Corylus avellana HOM05D007643 ORTHO05D007801 2.1e-10 69.7 64 54.7
FvH4_5g13250 Fragaria vesca HOM05D007643 ORTHO05D007801 2.7e-10 69.3 115 41.7
PGSC0003DMG400024520 Solanum tuberosum HOM05D007643 ORTHO05D007801 2.7e-10 69.3 138 35.5
FAN13G0443 Fragaria x ananassa HOM05D007643 ORTHO05D007801 6.0e-10 68.2 50 66.0
Nitab4.5_0002449g0120 Nicotiana tabacum HOM05D007643 ORTHO05D007801 1.3e-09 67.0 91 41.8
SGA_v2.0_scaffold67G22694 Striga asiatica HOM05D007643 ORTHO05D007801 3.0e-09 65.9 97 40.2
Hund02541 Selenicereus undatus HOM05D007643 ORTHO05D007801 1.9e-08 63.2 154 33.8
AL269U10022 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 3.3e-08 62.4 61 55.7
AL269U10030 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 3.3e-08 62.4 61 55.7
AL269U10040 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 3.3e-08 62.4 61 55.7
AL269U10050 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 3.3e-08 62.4 61 55.7
AL3G41370 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 3.3e-08 62.4 61 55.7
AL3G41380 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 3.3e-08 62.4 61 55.7
AL3G41390 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 3.3e-08 62.4 61 55.7
AL8G37440 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 3.3e-08 62.4 61 55.7
ECA232G2778 Erigeron canadensis HOM05D007643 ORTHO05D007801 3.3e-08 62.4 54 50.0
CARHR274520 Cardamine hirsuta HOM05D010173 ORTHO05D007801 5.6e-08 61.6 60 48.3
Zm00001eb101340 Zea mays HOM05D007643 ORTHO05D007801 1.6e-07 60.1 78 38.5
A03p46540 Brassica napus HOM05D010173 ORTHO05D007801 2.8e-07 59.3 76 42.1
BraA03t13778Z Brassica rapa HOM05D010173 ORTHO05D007801 2.8e-07 59.3 76 42.1
Carub.0008s2154 Capsella rubella HOM05D010173 ORTHO05D007801 2.8e-07 59.3 115 34.8
BcaNung02618 Brassica carinata HOM05D010173 ORTHO05D007801 6.2e-07 58.2 84 39.3
C07p44600 Brassica napus HOM05D010173 ORTHO05D007801 6.2e-07 58.2 84 39.3
BolC7t44981H Brassica oleracea HOM05D010173 ORTHO05D007801 6.2e-07 58.2 84 39.3
Sed0026794 Sechium edule HOM05D007643 ORTHO05D007801 8.1e-07 57.8 58 48.3
Cpa.g.sc3.212 Carica papaya HOM05D007643 ORTHO05D007801 1.4e-06 57.0 44 63.6
Solyc06g069350.3 Solanum lycopersicum HOM05D007643 ORTHO05D007801 2.4e-06 56.2 78 44.9
BcaC06g33198 Brassica carinata HOM05D010173 ORTHO05D007801 4.0e-06 55.5 79 39.2
BcaNung02617 Brassica carinata HOM05D010173 ORTHO05D007801 4.0e-06 55.5 84 38.1
BcaNung05759 Brassica carinata HOM05D010173 ORTHO05D007801 4.0e-06 55.5 79 39.2
TAR374G0331 Trochodendron aralioides HOM05D007643 ORTHO05D007801 4.0e-06 55.5 80 43.8


User provided reference genes

Program Settings