Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 3.5e-239 831.2 433 100.0
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 8.3e-164 580.9 405 72.6
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 7.8e-162 574.3 444 68.2
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 3.0e-161 572.4 406 74.6
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 1.6e-159 566.6 408 69.9
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 3.6e-159 565.5 433 69.1
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 6.8e-158 561.2 403 72.7
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 4.1e-155 552.0 406 69.5
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 1.3e-153 547.0 405 69.9
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 6.6e-153 544.7 430 67.0
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 1.5e-152 543.5 401 70.1
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 1.5e-152 543.5 400 70.2
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 1.9e-152 543.1 403 68.5
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 5.6e-152 541.6 437 66.8
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 7.3e-152 541.2 405 68.9
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.6e-151 540.0 400 69.5
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.6e-151 540.0 402 68.4
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.1e-151 539.7 405 68.9
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.4e-150 537.0 400 69.0
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 1.4e-150 537.0 405 68.4
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 4.0e-150 535.4 440 65.2
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 5.2e-150 535.0 445 65.2
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 5.8e-149 531.6 375 74.1
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 2.2e-148 529.6 404 67.1
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 2.9e-148 529.3 461 61.0
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 1.5e-144 516.9 395 68.6
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 9.5e-144 514.2 408 66.9
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 6.8e-142 508.1 395 67.8
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 1.2e-141 507.3 434 63.1
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 3.4e-141 505.8 404 66.6
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 9.9e-141 504.2 428 62.9
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 9.9e-141 504.2 453 59.4
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 1.7e-140 503.4 404 66.1
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 9.2e-139 497.7 439 63.8
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 1.3e-137 493.8 402 66.2
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 3.0e-137 492.7 403 64.5
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 3.9e-137 492.3 434 61.1
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 5.1e-137 491.9 403 63.8
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 1.1e-136 490.7 459 59.3
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 2.5e-136 489.6 403 63.3
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 4.3e-136 488.8 408 62.7
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 1.3e-135 487.3 399 64.4
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.3e-135 487.3 349 72.2
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 4.8e-135 485.3 438 60.0
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 8.1e-135 484.6 401 63.8
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 8.1e-135 484.6 404 62.4
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 1.8e-134 483.4 440 61.1
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 4.0e-134 482.3 401 63.3
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 5.3e-134 481.9 401 64.1
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 9.9e-133 477.6 401 62.6
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 9.9e-133 477.6 403 64.0
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 1.7e-132 476.9 347 71.8
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 1.7e-132 476.9 404 61.4
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 3.8e-132 475.7 407 63.1
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 4.9e-132 475.3 405 64.7
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 1.9e-131 473.4 404 61.1
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 1.6e-130 470.3 404 62.6
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 1.3e-129 467.2 397 63.2
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.7e-129 466.8 383 65.0
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 3.0e-129 466.1 415 59.0
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 3.0e-129 466.1 414 61.1
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 6.6e-129 464.9 402 61.7
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 8.7e-129 464.5 397 62.7
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.1e-128 464.2 389 60.9
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 1.1e-128 464.2 414 61.1
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 1.9e-128 463.4 403 62.3
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 2.5e-128 463.0 397 62.5
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 7.3e-128 461.5 400 60.5
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 1.3e-127 460.7 405 62.2
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 2.8e-127 459.5 404 60.9
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 4.8e-127 458.8 408 61.8
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 1.1e-126 457.6 401 62.1
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 1.1e-126 457.6 403 60.5
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.4e-126 457.2 411 59.4
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.4e-126 456.4 335 71.0
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 4.0e-126 455.7 403 60.3
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 6.9e-126 454.9 403 60.0
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 5.8e-125 451.8 336 69.6
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 2.9e-124 449.5 439 58.3
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 4.9e-124 448.7 404 60.1
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 6.4e-124 448.4 439 56.7
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 4.2e-123 445.7 424 56.6
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 4.6e-122 442.2 396 59.6
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 3.3e-120 436.0 364 62.1
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 3.3e-120 436.0 344 67.2
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.3e-119 434.1 404 58.7
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 1.6e-119 433.7 428 57.2
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 1.4e-118 430.6 398 58.0
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 1.8e-118 430.3 423 56.0
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 3.1e-118 429.5 349 65.3
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.7e-116 423.7 373 61.4
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 1.2e-114 417.5 353 65.2
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.6e-114 415.6 375 62.1
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 6.0e-114 415.2 394 58.9
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.3e-111 407.5 404 56.2
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 4.8e-111 405.6 329 66.0
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.6e-109 398.3 287 71.8
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 2.2e-108 396.7 304 68.8
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 3.8e-108 396.0 410 53.7
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 6.5e-108 395.2 329 65.0
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 5.5e-107 392.1 321 67.0
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 8.7e-105 384.8 287 70.4
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 1.1e-104 384.4 440 53.2
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 1.4e-99 367.5 322 58.7
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 2.5e-99 366.7 339 59.6
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 4.2e-99 365.9 351 59.0
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 2.2e-95 353.6 456 47.6
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 2.2e-95 353.6 333 60.1
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.2e-83 312.8 421 46.3
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 7.5e-72 275.4 221 64.7
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 1.2e-69 268.1 211 64.0
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 4.2e-59 233.0 420 37.6
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 1.6e-58 231.1 417 36.9
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 9.8e-56 221.9 131 86.3
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 3.9e-52 209.9 161 72.7
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 1.6e-50 204.5 329 41.6
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 3.4e-48 196.8 433 33.3
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 1.3e-47 194.9 124 79.0
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 2.5e-27 127.5 93 71.0
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 3.3e-27 127.1 104 60.6
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 5.8e-24 116.3 92 67.4
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.9e-22 111.3 105 61.9
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 2.7e-21 107.5 99 62.6
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.4e-17 95.1 118 39.8
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 1.5e-16 91.7 103 48.5
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 1.3e-15 88.6 156 37.8
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 3.4e-08 63.9 91 39.6
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 2.9e-07 60.8 148 33.1


User provided reference genes

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