Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02487 Eucalyptus grandis HOM05D007067 ORTHO05D008864 4.3e-92 341.3 167 100.0
Eucgr.K02485 Eucalyptus grandis HOM05D007067 ORTHO05D008864 8.4e-80 300.4 153 94.8
GSVIVG01004672001 Vitis vinifera HOM05D007067 ORTHO05D008864 9.6e-68 260.4 182 70.9
GSVIVG01005334001 Vitis vinifera HOM05D007067 ORTHO05D008864 9.6e-68 260.4 182 70.9
CSS0040643 Camellia sinensis var. sinensis HOM05D007067 ORTHO05D008864 1.1e-66 256.9 181 69.6
Manes.06G091000 Manihot esculenta HOM05D007067 ORTHO05D008864 4.0e-66 255.0 183 70.5
Cc04_g16320 Coffea canephora HOM05D007067 ORTHO05D008864 4.5e-65 251.5 181 69.1
Cpa.g.sc111.20 Carica papaya HOM05D007067 ORTHO05D008864 3.8e-64 248.4 168 73.2
Duzib205G1209 Durio zibethinus HOM05D007067 ORTHO05D008864 1.1e-63 246.9 189 68.3
Actinidia04879 Actinidia chinensis HOM05D007067 ORTHO05D008864 2.4e-63 245.7 183 66.1
TAR622G0622 Trochodendron aralioides HOM05D007067 ORTHO05D008864 2.4e-63 245.7 183 67.2
Potri.012G068500 Populus trichocarpa HOM05D007067 ORTHO05D008864 3.2e-63 245.4 182 69.2
Thecc.03G091100 Theobroma cacao HOM05D007067 ORTHO05D008864 7.1e-63 244.2 187 68.4
TWI60G1483 Tripterygium wilfordii HOM05D007067 ORTHO05D008864 7.1e-63 244.2 182 67.0
Sabra12G0047100 Salix brachista HOM05D007067 ORTHO05D008864 1.6e-62 243.0 182 68.1
Prupe.5G195500 Prunus persica HOM05D007067 ORTHO05D008864 7.9e-62 240.7 185 67.0
Hma1.2p1_0637F.1_g193620 Hydrangea macrophylla HOM05D007067 ORTHO05D008864 5.1e-61 238.0 127 87.4
Nn3g17293 Nelumbo nucifera HOM05D007067 ORTHO05D008864 8.7e-61 237.3 132 83.3
Cfa018925 Carpinus fangiana HOM05D007067 ORTHO05D008864 2.5e-60 235.7 181 64.1
Nitab4.5_0003381g0030 Nicotiana tabacum HOM05D007067 ORTHO05D008864 3.3e-60 235.3 181 66.9
MD06G1195600 Malus domestica HOM05D007067 ORTHO05D008864 4.3e-60 235.0 182 67.0
Rhsim08G0153200 Rhododendron simsii HOM05D007067 ORTHO05D008864 4.3e-60 235.0 181 63.5
vmacro17532 Vaccinium macrocarpon HOM05D007067 ORTHO05D008864 7.4e-60 234.2 181 63.0
MD14G1202700 Malus domestica HOM05D007067 ORTHO05D008864 9.6e-60 233.8 183 66.1
ClCG06G016120 Citrullus lanatus HOM05D007067 ORTHO05D008864 2.1e-59 232.6 179 64.8
MELO3C017182.2 Cucumis melo HOM05D007067 ORTHO05D008864 2.1e-59 232.6 179 66.5
RcHm_v2.0_Chr7g0181701 Rosa chinensis HOM05D007067 ORTHO05D008864 2.1e-59 232.6 185 64.9
CAN.G846.12 Capsicum annuum HOM05D007067 ORTHO05D008864 3.7e-59 231.9 181 64.6
DCAR_016569 Daucus carota HOM05D007067 ORTHO05D008864 3.7e-59 231.9 184 65.8
PGR044G1431 Punica granatum HOM05D007067 ORTHO05D008864 4.8e-59 231.5 170 71.2
QL10p017305 Quercus lobata HOM05D007067 ORTHO05D008864 4.8e-59 231.5 181 63.5
MSTRG.9621 Avicennia marina HOM05D007067 ORTHO05D008864 6.2e-59 231.1 182 64.3
CiPaw.11G046200 Carya illinoinensis HOM05D007067 ORTHO05D008864 6.2e-59 231.1 182 64.3
CsaV3_1G002440 Cucumis sativus L. HOM05D007067 ORTHO05D008864 6.2e-59 231.1 179 66.5
FAN13G0188 Fragaria x ananassa HOM05D007067 ORTHO05D008864 8.1e-59 230.7 185 64.9
FAN18G1220 Fragaria x ananassa HOM05D007067 ORTHO05D008864 8.1e-59 230.7 185 64.9
FAN08G0270 Fragaria x ananassa HOM05D007067 ORTHO05D008864 1.1e-58 230.3 185 67.6
Gohir.A03G067300 Gossypium hirsutum HOM05D007067 ORTHO05D008864 1.1e-58 230.3 148 79.1
Gohir.D03G093800 Gossypium hirsutum HOM05D007067 ORTHO05D008864 1.1e-58 230.3 148 79.1
Gorai.003G097800 Gossypium raimondii HOM05D007067 ORTHO05D008864 1.1e-58 230.3 148 79.1
EL10Ac5g11044 Beta vulgaris HOM05D007067 ORTHO05D008864 2.4e-58 229.2 181 64.1
SalBow3G2729 Salvia bowleyana HOM05D007067 ORTHO05D008864 6.9e-58 227.6 175 63.4
Migut.D01803 Erythranthe guttata HOM05D007067 ORTHO05D008864 9.0e-58 227.3 182 62.6
MBI02_g12272_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 1.5e-57 226.5 132 78.0
Nitab4.5_0005226g0040 Nicotiana tabacum HOM05D007067 ORTHO05D008864 2.6e-57 225.7 181 64.1
Dinv38731 Davidia involucrata HOM05D007067 ORTHO05D008864 4.5e-57 224.9 166 67.5
Atru.chr9.195 Acer truncatum HOM05D007067 ORTHO05D008864 1.7e-56 223.0 177 66.7
Sed0012968 Sechium edule HOM05D007067 ORTHO05D008864 1.7e-56 223.0 180 63.9
CDE02G3919 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 2.2e-56 222.6 183 62.3
AUR62008437 Chenopodium quinoa HOM05D007067 ORTHO05D008864 8.4e-56 220.7 128 82.0
PSO063G5395 Papaver somniferum HOM05D007067 ORTHO05D008864 8.4e-56 220.7 139 76.3
PSO832G0421 Papaver somniferum HOM05D007067 ORTHO05D008864 8.4e-56 220.7 139 76.3
CANSAT56G4102 Cannabis sativa HOM05D007067 ORTHO05D008864 7.1e-55 217.6 186 61.3
PGSC0003DMG400021933 Solanum tuberosum HOM05D007067 ORTHO05D008864 7.1e-55 217.6 173 64.7
Lj1g0007284 Lotus japonicus HOM05D007067 ORTHO05D008864 9.3e-55 217.2 181 60.8
Lj5A109T72 Lonicera japonica HOM05D007067 ORTHO05D008864 1.2e-54 216.9 133 77.4
Solyc12g036170.2 Solanum lycopersicum HOM05D007067 ORTHO05D008864 1.6e-54 216.5 121 82.6
Sopen12g016290 Solanum pennellii HOM05D007067 ORTHO05D008864 2.7e-54 215.7 129 77.5
Peaxi162Scf00106g00326 Petunia axillaris HOM05D007067 ORTHO05D008864 3.5e-54 215.3 133 78.2
HanXRQChr05g0156061 Helianthus annuus HOM05D007067 ORTHO05D008864 4.6e-54 214.9 178 64.6
Aqoxy3G00483 Aquilegia oxysepala HOM05D007067 ORTHO05D008864 7.9e-54 214.2 185 61.1
THA.LOC104808257 Tarenaya hassleriana HOM05D007067 ORTHO05D008864 7.9e-54 214.2 184 61.4
TPR.G11876 Trifolium pratense HOM05D007067 ORTHO05D008864 1.8e-53 213.0 181 59.7
Glyma.06G195200 Glycine max HOM05D007067 ORTHO05D008864 6.7e-53 211.1 182 57.7
AT1G18730 Arabidopsis thaliana HOM05D007067 ORTHO05D008864 8.7e-53 210.7 177 63.8
Ca_27682_v3 Cicer arietinum L. HOM05D007067 ORTHO05D008864 8.7e-53 210.7 182 58.8
Glyma.04G167400 Glycine max HOM05D007067 ORTHO05D008864 1.5e-52 209.9 182 58.2
AL1G31200 Arabidopsis lyrata HOM05D007067 ORTHO05D008864 1.9e-52 209.5 178 61.8
CDE09G1053 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 3.3e-52 208.8 121 79.3
Phvul.009G186200 Phaseolus vulgaris HOM05D007067 ORTHO05D008864 3.3e-52 208.8 181 58.6
unitig_0.g778 Utricularia gibba HOM05D007067 ORTHO05D008864 4.3e-52 208.4 118 80.5
C05p17040 Brassica napus HOM05D007067 ORTHO05D008864 7.4e-52 207.6 178 61.2
BolC5t30410H Brassica oleracea HOM05D007067 ORTHO05D008864 7.4e-52 207.6 178 61.2
Sp1g16740 Schrenkiella parvula HOM05D007067 ORTHO05D008864 7.4e-52 207.6 181 61.3
BcaB07g31890 Brassica carinata HOM05D007067 ORTHO05D008864 9.6e-52 207.2 177 63.3
Carub.0001s1838 Capsella rubella HOM05D007067 ORTHO05D008864 1.3e-51 206.8 178 63.5
Lsat_1_v5_gn_5_20880 Lactuca sativa HOM05D007067 ORTHO05D008864 1.3e-51 206.8 118 82.2
BcaC05g25773 Brassica carinata HOM05D007067 ORTHO05D008864 2.1e-51 206.1 173 63.0
Medtr3g435320 Medicago truncatula HOM05D007067 ORTHO05D008864 2.8e-51 205.7 177 62.1
A06p14840 Brassica napus HOM05D007067 ORTHO05D008864 3.7e-51 205.3 181 60.8
BraA06t24606Z Brassica rapa HOM05D007067 ORTHO05D008864 3.7e-51 205.3 181 60.8
ECA246G0430 Erigeron canadensis HOM05D007067 ORTHO05D008864 3.7e-51 205.3 125 78.4
ATR0564G121 Amborella trichopoda HOM05D007067 ORTHO05D008864 6.2e-51 204.5 138 72.5
Lalb_Chr08g0235641 Lupinus albus HOM05D007067 ORTHO05D008864 6.2e-51 204.5 136 70.6
BcaB03g14481 Brassica carinata HOM05D007067 ORTHO05D008864 8.2e-51 204.1 175 61.7
Thhalv10008902m.g Eutrema salsugineum HOM05D007067 ORTHO05D008864 8.2e-51 204.1 128 77.3
arahy.Tifrunner.gnm1.ann1.JMB3VF Arachis hypogaea HOM05D007067 ORTHO05D008864 1.1e-50 203.8 181 60.2
arahy.Tifrunner.gnm1.ann1.V8ZK3N Arachis hypogaea HOM05D007067 ORTHO05D008864 1.1e-50 203.8 181 60.2
C08p43060 Brassica napus HOM05D007067 ORTHO05D008864 1.1e-50 203.8 128 77.3
CARHR019370 Cardamine hirsuta HOM05D007067 ORTHO05D008864 1.4e-50 203.4 178 60.7
A09p59720 Brassica napus HOM05D007067 ORTHO05D008864 5.3e-50 201.4 128 76.6
BraA09t41348Z Brassica rapa HOM05D007067 ORTHO05D008864 5.3e-50 201.4 128 76.6
Peaxi162Scf00106g00037 Petunia axillaris HOM05D007067 ORTHO05D008864 5.3e-50 201.4 111 85.6
MBI02_g23462_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 5.8e-49 198.0 166 58.4
Psat5g201280 Pisum sativum HOM05D007067 ORTHO05D008864 5.8e-49 198.0 181 56.4
BolC8t51861H Brassica oleracea HOM05D007067 ORTHO05D008864 1.3e-48 196.8 129 76.0
COL.COLO4_28333 Corchorus olitorius HOM05D007067 ORTHO05D008864 1.1e-47 193.7 171 63.2
Aa31LG7G3520 Aethionema arabicum HOM05D007067 ORTHO05D008864 4.6e-46 188.3 116 74.1
Zm00001eb254450 Zea mays HOM05D007067 ORTHO05D008864 4.5e-41 171.8 136 63.2
AUR62021654 Chenopodium quinoa HOM05D007067 ORTHO05D008864 2.5e-39 166.0 147 56.5
Os02g0744000 Oryza sativa ssp. japonica HOM05D007067 ORTHO05D008864 4.2e-39 165.2 141 59.6
BcaC07g41296 Brassica carinata HOM05D007067 ORTHO05D008864 5.3e-34 148.3 111 64.0
SEGI_39094 Sequoiadendron giganteum HOM05D007067 ORTHO05D008864 7.2e-31 137.9 126 55.6
Rhsim08G0153500 Rhododendron simsii HOM05D007067 ORTHO05D008864 2.2e-27 126.3 175 44.6
FvH4_5g14690 Fragaria vesca HOM05D007067 ORTHO05D008864 7.7e-25 117.9 124 51.6
Ciclev10022880m.g Citrus clementina HOM05D007067 ORTHO05D008864 6.5e-24 114.8 114 50.0
CBR_g30507 Chara braunii HOM05D007067 ORTHO05D008864 2.3e-21 106.3 94 53.2
Pp3c16_3930 Physcomitrium patens HOM05D007067 ORTHO05D008864 1.7e-19 100.1 97 49.5
Mapoly0149s0008 Marchantia polymorpha HOM05D007067 ORTHO05D008864 1.8e-18 96.7 100 44.0
Ah.11g048310 Amaranthus hybridus HOM05D007067 ORTHO05D008864 2.0e-12 76.6 87 46.0
Manes.06G090801 Manihot esculenta HOM05D007067 ORTHO05D008864 2.0e-12 76.6 112 41.1
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.1e-10 70.9 52 76.9
Haze_07309 Corylus avellana HOM05D007067 ORTHO05D008864 4.5e-09 65.5 181 30.9
Rhsim08G0168600 Rhododendron simsii HOM05D000306 ORTHO05D023263 6.5e-08 61.6 180 30.0


User provided reference genes

Program Settings