Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 5.0e-82 307.8 158 100.0
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 9.3e-81 303.5 158 98.7
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.5e-78 296.2 157 96.8
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.5e-78 295.4 157 96.2
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 1.4e-55 219.9 152 72.4
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 8.2e-53 210.7 151 67.5
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 5.3e-52 208.0 153 69.9
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 2.0e-51 206.1 153 69.3
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 2.9e-50 202.2 149 69.8
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 1.5e-49 199.9 154 66.2
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 5.5e-49 198.0 152 66.4
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 7.2e-49 197.6 154 66.2
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 4.7e-48 194.9 151 64.9
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 4.7e-48 194.9 153 68.6
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 1.0e-47 193.7 151 63.6
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 1.4e-47 193.4 151 66.9
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 1.8e-47 193.0 156 66.7
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 2.3e-47 192.6 158 65.8
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 4.0e-47 191.8 145 66.9
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 5.2e-47 191.4 149 65.8
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 8.8e-47 190.7 147 66.0
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 1.2e-46 190.3 151 62.9
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 2.0e-46 189.5 154 66.9
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 2.2e-45 186.0 132 71.2
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 6.3e-45 184.5 156 62.2
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 8.3e-45 184.1 157 61.8
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 8.3e-45 184.1 150 62.0
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 5.4e-44 181.4 150 61.3
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 9.1e-44 180.6 152 61.8
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 2.7e-43 179.1 147 62.6
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 4.5e-43 178.3 151 60.9
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.0e-42 177.2 147 61.9
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 2.9e-42 175.6 151 62.9
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 2.9e-42 175.6 155 60.6
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 2.9e-42 175.6 155 60.6
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 5.5e-41 171.4 157 61.8
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 9.5e-41 170.6 150 61.3
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.6e-40 169.9 160 57.5
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 1.5e-38 163.3 108 69.4
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 1.5e-38 163.3 153 60.1
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 2.0e-38 162.9 149 58.4
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 9.8e-38 160.6 146 63.0
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.2e-37 159.5 118 65.3
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 3.7e-37 158.7 151 60.9
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 4.9e-37 158.3 151 56.3
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 1.4e-36 156.8 157 55.4
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 2.4e-36 156.0 146 59.6
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 2.4e-36 156.0 149 55.0
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 4.1e-36 155.2 152 55.3
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 9.2e-36 154.1 154 55.8
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 9.2e-36 154.1 153 54.2
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 2.0e-35 152.9 154 54.5
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 4.5e-35 151.8 148 55.4
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 5.9e-35 151.4 154 55.2
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 2.3e-34 149.4 152 57.2
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 2.3e-34 149.4 146 56.2
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 2.3e-34 149.4 151 51.7
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 2.9e-34 149.1 136 60.3
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 6.6e-34 147.9 124 62.1
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 3.3e-33 145.6 154 54.5
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 1.6e-32 143.3 146 54.1
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 1.6e-32 143.3 109 64.2
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 1.6e-32 143.3 109 64.2
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 2.1e-32 142.9 147 56.5
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 3.6e-32 142.1 154 51.9
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 3.6e-32 142.1 147 56.5
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 6.1e-32 141.4 146 53.4
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 8.0e-32 141.0 146 53.4
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 1.0e-31 140.6 147 56.5
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 1.0e-31 140.6 152 50.0
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 1.8e-31 139.8 152 54.6
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 1.8e-31 139.8 146 54.8
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 2.3e-31 139.4 146 53.4
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 2.3e-31 139.4 119 58.8
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 2.3e-31 139.4 133 56.4
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 3.0e-31 139.0 146 52.1
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 3.0e-31 139.0 152 50.7
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 4.0e-31 138.7 146 54.8
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 4.0e-31 138.7 146 54.8
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 1.5e-30 136.7 111 59.5
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 3.4e-30 135.6 146 50.7
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 4.4e-30 135.2 127 59.8
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 5.7e-30 134.8 147 55.1
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 5.7e-30 134.8 146 50.7
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 9.8e-30 134.0 146 52.1
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 9.8e-30 134.0 146 52.7
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 1.3e-29 133.7 147 55.1
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 1.3e-29 133.7 159 50.3
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 1.7e-29 133.3 150 54.0
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 2.9e-29 132.5 149 51.0
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 3.7e-29 132.1 146 49.3
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 1.1e-28 130.6 154 50.0
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 9.2e-28 127.5 123 56.9
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 1.2e-27 127.1 148 51.4
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 1.2e-27 127.1 157 49.7
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 5.9e-27 124.8 142 49.3
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 3.9e-26 122.1 147 53.7
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 1.9e-25 119.8 134 53.7
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 2.5e-25 119.4 84 71.4
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 2.5e-25 119.4 84 71.4
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 3.3e-25 119.0 150 48.7
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 3.3e-25 119.0 118 53.4
Prupe.7G091800 Prunus persica HOM05D006043 ORTHO05D007309 4.3e-25 118.6 84 71.4
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 4.3e-25 118.6 147 44.9
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 5.6e-25 118.2 146 49.3
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 5.6e-25 118.2 132 53.8
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 1.6e-24 116.7 137 49.6
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 1.8e-23 113.2 134 49.3
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 5.2e-23 111.7 146 46.6
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 6.8e-23 111.3 133 53.4
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 3.4e-22 109.0 134 50.0
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 3.4e-22 109.0 132 50.8
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 7.0e-20 101.3 150 40.7
C08p36560 Brassica napus HOM05D006043 ORTHO05D007309 3.0e-18 95.9 105 56.2
BcaC03g16179 Brassica carinata HOM05D006043 ORTHO05D007309 2.1e-16 89.7 105 54.3
C02p39530 Brassica napus HOM05D006043 ORTHO05D007309 6.2e-16 88.2 105 53.3
BolC2t09966H Brassica oleracea HOM05D006043 ORTHO05D007309 6.2e-16 88.2 105 53.3
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 6.2e-16 88.2 82 54.9
AUR62033593 Chenopodium quinoa HOM05D006043 ORTHO05D007309 1.1e-15 87.4 134 44.8
Nn1g08859 Nelumbo nucifera HOM05D006043 ORTHO05D007309 1.3e-13 80.5 64 65.6
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 2.9e-13 79.3 108 47.2
THA.LOC104823222 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 2.4e-12 76.3 70 54.3
SMO347G0034 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 4.6e-11 72.0 101 45.5
AUR62037886 Chenopodium quinoa HOM05D006043 ORTHO05D007309 5.6e-09 65.1 67 49.3
SMO358G0245 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 2.0e-06 56.6 71 50.7
Mapoly0058s0037 Marchantia polymorpha HOM05D006043 ORTHO05D007309 3.4e-06 55.8 99 41.4


User provided reference genes

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