Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02360 Eucalyptus grandis HOM05D007112 ORTHO05D008930 5.6e-135 484.2 230 100.0
Cfa017735 Carpinus fangiana HOM05D007112 ORTHO05D008930 6.3e-70 268.1 224 59.8
GSVIVG01001529001 Vitis vinifera HOM05D007112 ORTHO05D008930 6.3e-70 268.1 219 60.3
PGR044G1116 Punica granatum HOM05D007112 ORTHO05D008930 1.6e-68 263.5 223 59.2
Atru.chr6.3529 Acer truncatum HOM05D007112 ORTHO05D008930 4.5e-68 261.9 222 57.2
Duzib133G1446 Durio zibethinus HOM05D007112 ORTHO05D008930 6.6e-67 258.1 221 55.7
Gohir.A07G195600 Gossypium hirsutum HOM05D007112 ORTHO05D008930 9.5e-66 254.2 221 55.7
Sabra14G0134200 Salix brachista HOM05D007112 ORTHO05D008930 2.8e-65 252.7 225 56.0
Ciclev10016325m.g Citrus clementina HOM05D007112 ORTHO05D008930 3.6e-65 252.3 229 54.1
Gorai.001G227200 Gossypium raimondii HOM05D007112 ORTHO05D008930 6.1e-65 251.5 221 56.1
LjContig00389g0002281 Lotus japonicus HOM05D007112 ORTHO05D008930 8.0e-65 251.1 221 56.1
Thecc.01G207600 Theobroma cacao HOM05D007112 ORTHO05D008930 1.0e-64 250.8 222 55.4
Rhsim01G0247600 Rhododendron simsii HOM05D007112 ORTHO05D008930 2.3e-64 249.6 220 56.4
Hma1.2p1_1043F.1_g251280 Hydrangea macrophylla HOM05D007112 ORTHO05D008930 4.0e-64 248.8 218 55.5
Dinv28792 Davidia involucrata HOM05D007112 ORTHO05D008930 5.2e-64 248.4 217 54.8
Gohir.D07G202200 Gossypium hirsutum HOM05D007112 ORTHO05D008930 2.0e-63 246.5 217 56.7
TAR362G0557 Trochodendron aralioides HOM05D007112 ORTHO05D008930 3.4e-63 245.7 219 57.1
COL.COLO4_34270 Corchorus olitorius HOM05D007112 ORTHO05D008930 1.3e-62 243.8 221 54.3
FAN15G3611 Fragaria x ananassa HOM05D007112 ORTHO05D008930 1.3e-62 243.8 217 57.6
RcHm_v2.0_Chr6g0282211 Rosa chinensis HOM05D007112 ORTHO05D008930 1.7e-62 243.4 223 54.7
arahy.Tifrunner.gnm1.ann1.T2R7SH Arachis hypogaea HOM05D007112 ORTHO05D008930 1.4e-61 240.4 220 55.5
CsaV3_7G026720 Cucumis sativus L. HOM05D007112 ORTHO05D008930 4.1e-61 238.8 226 54.0
Lj2A1111T23 Lonicera japonica HOM05D007112 ORTHO05D008930 4.1e-61 238.8 232 51.7
FvH4_2g17490 Fragaria vesca HOM05D007112 ORTHO05D008930 9.2e-61 237.7 217 56.7
MD05G1153700 Malus domestica HOM05D007112 ORTHO05D008930 1.2e-60 237.3 229 54.6
vmacro14688 Vaccinium macrocarpon HOM05D007112 ORTHO05D008930 2.7e-60 236.1 205 56.1
Actinidia23803 Actinidia chinensis HOM05D007112 ORTHO05D008930 3.5e-60 235.7 223 52.5
TWI36G0064 Tripterygium wilfordii HOM05D007112 ORTHO05D008930 4.5e-60 235.3 220 51.8
QL05p089159 Quercus lobata HOM05D007112 ORTHO05D008930 7.8e-60 234.6 217 55.8
ClCG09G008370 Citrullus lanatus HOM05D007112 ORTHO05D008930 1.3e-59 233.8 232 51.3
Oeu013523.1 Olea europaea HOM05D007112 ORTHO05D008930 1.3e-59 233.8 219 53.4
Prupe.8G187100 Prunus persica HOM05D007112 ORTHO05D008930 2.3e-59 233.0 233 54.5
Phvul.010G036300 Phaseolus vulgaris HOM05D007112 ORTHO05D008930 3.9e-59 232.3 220 54.1
VMungo0331G1777 Vigna mungo HOM05D007112 ORTHO05D008930 1.5e-58 230.3 222 53.2
Carub.0003s0707 Capsella rubella HOM05D007112 ORTHO05D008930 2.5e-58 229.6 228 51.8
CARHR082180 Cardamine hirsuta HOM05D007112 ORTHO05D008930 3.3e-58 229.2 221 53.4
Cc01_g15870 Coffea canephora HOM05D007112 ORTHO05D008930 3.3e-58 229.2 231 49.8
Migut.D00774 Erythranthe guttata HOM05D007112 ORTHO05D008930 7.3e-58 228.0 222 52.3
Sed0011312 Sechium edule HOM05D007112 ORTHO05D008930 7.3e-58 228.0 223 52.5
Glyma.03G097000 Glycine max HOM05D007112 ORTHO05D008930 1.6e-57 226.9 226 51.8
Glyma.07G124300 Glycine max HOM05D007112 ORTHO05D008930 2.8e-57 226.1 222 51.8
Lalb_Chr07g0194661 Lupinus albus HOM05D007112 ORTHO05D008930 3.6e-57 225.7 224 51.8
Medtr8g010140 Medicago truncatula HOM05D007112 ORTHO05D008930 3.6e-57 225.7 221 52.5
Hund02806 Selenicereus undatus HOM05D007112 ORTHO05D008930 1.0e-56 224.2 220 50.5
TPR.G17379 Trifolium pratense HOM05D007112 ORTHO05D008930 1.0e-56 224.2 222 52.7
THA.LOC104819012 Tarenaya hassleriana HOM05D007112 ORTHO05D008930 1.4e-56 223.8 224 50.9
AUR62008068 Chenopodium quinoa HOM05D007112 ORTHO05D008930 3.1e-56 222.6 223 51.1
Nitab4.5_0000038g0350 Nicotiana tabacum HOM05D007112 ORTHO05D008930 5.2e-56 221.9 219 51.6
SalBow3G4154 Salvia bowleyana HOM05D007112 ORTHO05D008930 5.2e-56 221.9 220 51.8
Sp3g06430 Schrenkiella parvula HOM05D007112 ORTHO05D008930 5.2e-56 221.9 227 51.5
Nitab4.5_0010469g0020 Nicotiana tabacum HOM05D007112 ORTHO05D008930 8.9e-56 221.1 225 48.9
Psat4g208280 Pisum sativum HOM05D007112 ORTHO05D008930 1.2e-55 220.7 219 52.5
AUR62028645 Chenopodium quinoa HOM05D007112 ORTHO05D008930 2.6e-55 219.5 223 50.2
CANSAT01G1474 Cannabis sativa HOM05D007112 ORTHO05D008930 3.4e-55 219.2 235 51.1
MSTRG.18505 Avicennia marina HOM05D007112 ORTHO05D008930 3.7e-54 215.7 222 49.5
HanXRQChr08g0231791 Helianthus annuus HOM05D007112 ORTHO05D008930 6.4e-54 214.9 224 50.0
A05p40690 Brassica napus HOM05D007112 ORTHO05D008930 8.3e-54 214.5 224 50.4
Ca_23159_v3 Cicer arietinum L. HOM05D007112 ORTHO05D008930 8.3e-54 214.5 221 50.2
Peaxi162Scf02239g00022 Petunia axillaris HOM05D007112 ORTHO05D008930 1.1e-53 214.2 221 47.5
PGSC0003DMG400021909 Solanum tuberosum HOM05D007112 ORTHO05D008930 2.4e-53 213.0 225 48.4
Solyc09g047840.3 Solanum lycopersicum HOM05D007112 ORTHO05D008930 3.2e-53 212.6 224 48.7
BraA05t22800Z Brassica rapa HOM05D007112 ORTHO05D008930 5.4e-53 211.8 225 49.3
CSS0005940 Camellia sinensis var. sinensis HOM05D007112 ORTHO05D008930 5.4e-53 211.8 219 51.6
Thhalv10022158m.g Eutrema salsugineum HOM05D007112 ORTHO05D008930 7.0e-53 211.5 228 50.0
Sopen09g015950 Solanum pennellii HOM05D007112 ORTHO05D008930 7.0e-53 211.5 232 47.8
BcaC05g29544 Brassica carinata HOM05D007112 ORTHO05D008930 1.6e-52 210.3 224 49.6
AT3G07525 Arabidopsis thaliana HOM05D007112 ORTHO05D008930 2.7e-52 209.5 221 49.8
Aa31LG5G18060 Aethionema arabicum HOM05D007112 ORTHO05D008930 3.5e-52 209.1 224 50.0
Aqoxy5G04050 Aquilegia oxysepala HOM05D007112 ORTHO05D008930 1.7e-51 206.8 220 49.1
FAN24G0137 Fragaria x ananassa HOM05D007112 ORTHO05D008930 1.7e-51 206.8 223 50.7
PSO675G4719 Papaver somniferum HOM05D007112 ORTHO05D008930 5.0e-51 205.3 246 45.5
arahy.Tifrunner.gnm1.ann1.X2Q8CL Arachis hypogaea HOM05D007112 ORTHO05D008930 1.1e-50 204.1 220 50.0
BolC5t34634H Brassica oleracea HOM05D007112 ORTHO05D008930 1.1e-50 204.1 225 48.4
Manes.13G056200 Manihot esculenta HOM05D007112 ORTHO05D008930 1.1e-50 204.1 168 59.5
ECA247G2139 Erigeron canadensis HOM05D000092 ORTHO05D008930 3.3e-50 202.6 226 49.1
CiPaw.14G038400 Carya illinoinensis HOM05D007112 ORTHO05D008930 4.3e-50 202.2 185 54.1
PSO732G0401 Papaver somniferum HOM05D007112 ORTHO05D008930 1.2e-49 200.7 244 44.3
C05p59800 Brassica napus HOM05D007112 ORTHO05D008930 8.0e-49 198.0 224 48.2
Lsat_1_v5_gn_9_16901 Lactuca sativa HOM05D007112 ORTHO05D008930 1.4e-48 197.2 218 46.3
Sc24g0003360 Simmondsia chinensis HOM05D007112 ORTHO05D008930 2.3e-48 196.4 221 47.1
SHI30551 Sapria himalayana HOM05D007112 ORTHO05D008930 6.8e-48 194.9 216 47.2
ATR0752G208 Amborella trichopoda HOM05D007112 ORTHO05D008930 2.0e-47 193.4 224 44.6
unitig_60.g25572 Utricularia gibba HOM05D007112 ORTHO05D008930 1.1e-45 187.6 228 45.2
Hma1.2p1_1043F.1_g251290 Hydrangea macrophylla HOM05D007112 ORTHO05D008930 9.2e-45 184.5 141 60.3
MELO3C021125.2 Cucumis melo HOM05D007112 ORTHO05D008930 3.5e-44 182.6 160 56.2
Nn7g37436 Nelumbo nucifera HOM05D007112 ORTHO05D008930 1.3e-43 180.6 151 59.6
Ah.11g050810 Amaranthus hybridus HOM05D007112 ORTHO05D008930 1.1e-40 171.0 221 39.8
HPP92_001291 Vanilla planifolia HOM05D007112 ORTHO05D008930 1.1e-40 171.0 213 44.6
Zm00001eb425740 Zea mays HOM05D007112 ORTHO05D008930 2.6e-39 166.4 218 43.6
CDE05G1497 Ceratophyllum demersum HOM05D007112 ORTHO05D008930 2.2e-38 163.3 170 52.4
DCAR_018609 Daucus carota HOM05D007112 ORTHO05D008930 2.9e-38 162.9 161 48.4
Os04g0497350 Oryza sativa ssp. japonica HOM05D007112 ORTHO05D008930 3.9e-35 152.5 219 40.2
MBI10_g35388_MAGBIO Magnolia biondii HOM05D007112 ORTHO05D008930 8.6e-35 151.4 259 39.0
CAN.G50.11 Capsicum annuum HOM05D007112 ORTHO05D008930 2.6e-31 139.8 128 53.9
HanXRQChr03g0082541 Helianthus annuus HOM05D007112 ORTHO05D008930 1.7e-30 137.1 108 61.1
Pp3c26_2050 Physcomitrium patens HOM05D007112 ORTHO05D008930 6.6e-27 125.2 189 37.0
Cpa.g.sc8.40 Carica papaya HOM05D007112 ORTHO05D008930 1.1e-26 124.4 121 52.1
AagrBONN_evm.TU.Sc2ySwM_344.2017 Anthoceros agrestis HOM05D007112 ORTHO05D008930 5.6e-26 122.1 189 37.6
MD10G1148000 Malus domestica HOM05D007112 ORTHO05D008930 8.1e-25 118.2 125 52.0
Mapoly0002s0314 Marchantia polymorpha HOM05D007112 ORTHO05D008930 5.8e-23 112.1 182 35.2
Haze_03375 Corylus avellana HOM05D007112 ORTHO05D008930 2.2e-22 110.2 150 41.3
EL10Ac5g10586 Beta vulgaris HOM05D007112 ORTHO05D008930 4.9e-22 109.0 83 55.4
SGA_v2.0_scaffold29G12307 Striga asiatica HOM05D007112 ORTHO05D008930 1.9e-21 107.1 145 42.1
Haze_03371 Corylus avellana HOM05D007112 ORTHO05D008930 1.9e-18 97.1 98 50.0
CDE05G2169 Ceratophyllum demersum HOM05D007112 ORTHO05D008930 2.1e-17 93.6 173 38.7
Haze_03374 Corylus avellana HOM05D000072 ORTHO05D000026 1.2e-15 87.8 98 48.0
SMO141G0021 Selaginella moellendorffii HOM05D007112 ORTHO05D008930 1.2e-15 87.8 232 30.6
EL10Ac5g10588 Beta vulgaris HOM05D007112 ORTHO05D008930 1.9e-13 80.5 60 61.7
TWI18G1453 Tripterygium wilfordii HOM05D007112 ORTHO05D008930 9.6e-10 68.2 91 38.5
C04p34930 Brassica napus HOM05D007112 ORTHO05D008930 1.3e-09 67.8 107 37.4
Nn7g37443 Nelumbo nucifera HOM05D007112 ORTHO05D008930 2.8e-09 66.6 66 48.5
BolC4t25047H Brassica oleracea HOM05D007112 ORTHO05D027530 2.0e-07 60.5 144 31.9


User provided reference genes

Program Settings