Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02344 Eucalyptus grandis HOM05D007415 ORTHO05D009324 1.8e-170 602.4 300 100.0
CiPaw.07G119000 Carya illinoinensis HOM05D007415 ORTHO05D009324 6.5e-91 338.2 254 65.0
Cfa006296 Carpinus fangiana HOM05D007415 ORTHO05D009324 8.5e-91 337.8 262 63.7
PGR044G2664 Punica granatum HOM05D007415 ORTHO05D009324 5.1e-88 328.6 258 62.4
Gohir.D07G201100 Gossypium hirsutum HOM05D007415 ORTHO05D009324 1.5e-87 327.0 248 61.7
Gorai.001G225800 Gossypium raimondii HOM05D007415 ORTHO05D009324 1.5e-87 327.0 248 61.7
Thecc.01G204000 Theobroma cacao HOM05D007415 ORTHO05D009324 7.4e-87 324.7 248 62.5
Dinv02951 Davidia involucrata HOM05D007415 ORTHO05D009324 1.3e-86 323.9 250 63.6
Manes.12G058800 Manihot esculenta HOM05D007415 ORTHO05D009324 8.2e-86 321.2 248 63.3
MD11G1318200 Malus domestica HOM05D007415 ORTHO05D009324 1.1e-85 320.9 269 61.0
Potri.014G197700 Populus trichocarpa HOM05D007415 ORTHO05D009324 1.2e-84 317.4 258 60.5
Atru.chr6.3473 Acer truncatum HOM05D007415 ORTHO05D009324 2.6e-84 316.2 254 64.2
COL.COLO4_19724 Corchorus olitorius HOM05D007415 ORTHO05D009324 5.9e-84 315.1 248 60.9
MELO3C002194.2 Cucumis melo HOM05D007415 ORTHO05D009324 1.0e-83 314.3 256 59.8
CsaV3_1G007790 Cucumis sativus L. HOM05D007415 ORTHO05D009324 1.7e-83 313.5 258 59.7
Oeu058216.1 Olea europaea HOM05D007415 ORTHO05D009324 3.8e-83 312.4 249 62.2
Lsat_1_v5_gn_9_15740 Lactuca sativa HOM05D007415 ORTHO05D009324 1.9e-82 310.1 258 60.1
MD03G1298900 Malus domestica HOM05D007415 ORTHO05D009324 1.9e-82 310.1 259 59.1
CSS0038002 Camellia sinensis var. sinensis HOM05D007415 ORTHO05D009324 9.4e-82 307.8 250 59.2
Ciclev10016323m.g Citrus clementina HOM05D007415 ORTHO05D009324 1.2e-81 307.4 249 62.2
MSTRG.21289 Avicennia marina HOM05D007415 ORTHO05D009324 1.4e-80 303.9 253 60.9
Migut.D00758 Erythranthe guttata HOM05D007415 ORTHO05D009324 3.0e-80 302.8 247 57.9
Prupe.8G267300 Prunus persica HOM05D007415 ORTHO05D009324 6.7e-80 301.6 262 59.2
CANSAT11G1932 Cannabis sativa HOM05D007415 ORTHO05D009324 1.3e-78 297.4 265 57.4
Nitab4.5_0011643g0030 Nicotiana tabacum HOM05D007415 ORTHO05D009324 2.8e-78 296.2 247 61.5
Actinidia23816 Actinidia chinensis HOM05D007415 ORTHO05D009324 3.1e-77 292.7 257 56.4
Cc01_g15740 Coffea canephora HOM05D007415 ORTHO05D009324 7.0e-77 291.6 249 57.4
Sc05g0001580 Simmondsia chinensis HOM05D007415 ORTHO05D009324 2.0e-76 290.0 235 60.9
ClCG01G014510 Citrullus lanatus HOM05D007415 ORTHO05D009324 2.7e-76 289.7 276 54.0
HanXRQChr08g0230811 Helianthus annuus HOM05D007415 ORTHO05D009324 2.2e-75 286.6 250 58.4
Solyc09g018950.3 Solanum lycopersicum HOM05D007415 ORTHO05D009324 3.8e-75 285.8 247 57.5
arahy.Tifrunner.gnm1.ann1.HL0ERI Arachis hypogaea HOM05D007415 ORTHO05D009324 1.5e-74 283.9 258 58.1
CSS0018954 Camellia sinensis var. sinensis HOM05D007415 ORTHO05D009324 1.9e-74 283.5 230 60.9
Sopen09g012680 Solanum pennellii HOM05D007415 ORTHO05D009324 1.9e-74 283.5 247 57.5
TAR636G2599 Trochodendron aralioides HOM05D007415 ORTHO05D009324 2.5e-74 283.1 232 58.6
vmacro14670 Vaccinium macrocarpon HOM05D007415 ORTHO05D009324 2.5e-74 283.1 253 56.5
arahy.Tifrunner.gnm1.ann1.YL0UD8 Arachis hypogaea HOM05D007415 ORTHO05D009324 3.2e-74 282.7 258 58.1
Sed0017664 Sechium edule HOM05D007415 ORTHO05D009324 3.2e-74 282.7 258 57.0
Rhsim01G0246200 Rhododendron simsii HOM05D007415 ORTHO05D009324 4.7e-73 278.9 247 56.3
QL03p044140 Quercus lobata HOM05D007415 ORTHO05D009324 8.0e-73 278.1 234 58.1
Aa31sc565G30 Aethionema arabicum HOM05D007415 ORTHO05D009324 3.0e-72 276.2 264 55.7
CARHR218100 Cardamine hirsuta HOM05D007415 ORTHO05D009324 3.4e-71 272.7 249 57.4
Carub.0007s3006 Capsella rubella HOM05D007415 ORTHO05D009324 2.2e-70 270.0 249 56.2
CAN.G15.19 Capsicum annuum HOM05D007415 ORTHO05D009324 8.3e-70 268.1 258 55.0
Nn4g24568 Nelumbo nucifera HOM05D007415 ORTHO05D009324 1.8e-69 266.9 250 53.6
Lj1g0001063 Lotus japonicus HOM05D007415 ORTHO05D009324 2.4e-69 266.5 294 51.7
Gohir.A07G194700 Gossypium hirsutum HOM05D007415 ORTHO05D009324 4.1e-69 265.8 209 60.8
AL9U11890 Arabidopsis lyrata HOM05D007415 ORTHO05D009324 5.4e-69 265.4 249 55.8
Sp7g09150 Schrenkiella parvula HOM05D007415 ORTHO05D009324 7.0e-69 265.0 256 54.3
Nitab4.5_0010771g0010 Nicotiana tabacum HOM05D007415 ORTHO05D009324 1.2e-68 264.2 247 56.3
AT4G12760 Arabidopsis thaliana HOM05D007415 ORTHO05D009324 1.6e-68 263.8 250 56.0
Glyma.04G002800 Glycine max HOM05D007415 ORTHO05D009324 6.5e-67 258.5 249 53.4
Thhalv10026014m.g Eutrema salsugineum HOM05D007415 ORTHO05D009324 1.5e-66 257.3 248 53.2
Psat5g001880 Pisum sativum HOM05D007415 ORTHO05D009324 1.9e-66 256.9 250 54.0
SalBow6G5534 Salvia bowleyana HOM05D007415 ORTHO05D009324 1.9e-66 256.9 314 46.5
Cpa.g.sc8.12 Carica papaya HOM05D007415 ORTHO05D009324 3.2e-66 256.1 211 59.2
BcaB04g17744 Brassica carinata HOM05D007415 ORTHO05D009324 1.2e-65 254.2 264 51.5
unitig_61.g26009 Utricularia gibba HOM05D007415 ORTHO05D009324 1.2e-65 254.2 249 52.2
PSO675G4429 Papaver somniferum HOM05D007415 ORTHO05D009324 1.6e-65 253.8 247 52.6
C08p09070 Brassica napus HOM05D007415 ORTHO05D009324 2.1e-65 253.4 248 53.2
BolC8t47754H Brassica oleracea HOM05D007415 ORTHO05D009324 2.1e-65 253.4 248 53.2
Medtr3g118090 Medicago truncatula HOM05D007415 ORTHO05D009324 6.1e-65 251.9 261 51.3
BcaC07g37433 Brassica carinata HOM05D007415 ORTHO05D009324 1.0e-64 251.1 248 52.8
THA.LOC104808823 Tarenaya hassleriana HOM05D007415 ORTHO05D009324 1.8e-64 250.4 264 51.9
VMungo1309G2266 Vigna mungo HOM05D007415 ORTHO05D009324 3.0e-64 249.6 249 55.0
BraA08t32753Z Brassica rapa HOM05D007415 ORTHO05D009324 6.8e-64 248.4 248 52.4
SHI10204 Sapria himalayana HOM05D007415 ORTHO05D009324 4.4e-63 245.7 232 50.9
TWI36G0361 Tripterygium wilfordii HOM05D007415 ORTHO05D009324 7.5e-63 245.0 254 50.4
GSVIVG01038257001 Vitis vinifera HOM05D007415 ORTHO05D009324 2.2e-62 243.4 236 48.3
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 4.9e-62 242.3 241 51.9
Duzib133G1418 Durio zibethinus HOM05D007415 ORTHO05D009324 1.4e-61 240.7 248 51.2
Peaxi162Scf00424g00066 Petunia axillaris HOM05D007415 ORTHO05D009324 1.8e-61 240.4 216 56.9
A08p07370 Brassica napus HOM05D007415 ORTHO05D009324 4.1e-61 239.2 273 47.6
Aqoxy4G00006 Aquilegia oxysepala HOM05D007415 ORTHO05D009324 4.5e-60 235.7 257 46.3
ECA247G1801 Erigeron canadensis HOM05D007415 ORTHO05D009324 1.3e-59 234.2 252 51.2
Hund02818 Selenicereus undatus HOM05D007415 ORTHO05D009324 1.3e-59 234.2 247 53.8
EL10Ac5g10567 Beta vulgaris HOM05D007415 ORTHO05D009324 1.7e-59 233.8 199 61.3
Lj1C108T7 Lonicera japonica HOM05D007415 ORTHO05D009324 1.9e-58 230.3 175 63.4
Sabra14G0132700 Salix brachista HOM05D007415 ORTHO05D009324 5.6e-58 228.8 325 42.8
Lalb_Chr11g0061191 Lupinus albus HOM05D007415 ORTHO05D009324 3.6e-57 226.1 181 61.3
Os05g0417300 Oryza sativa ssp. japonica HOM05D007415 ORTHO05D009324 1.0e-56 224.6 251 46.2
MBI10_g35389_MAGBIO Magnolia biondii HOM05D007415 ORTHO05D009324 1.4e-56 224.2 238 49.2
Glyma.06G002800 Glycine max HOM05D007415 ORTHO05D009324 1.7e-51 207.2 196 55.1
AUR62028622 Chenopodium quinoa HOM05D007415 ORTHO05D009324 3.6e-49 199.5 247 47.0
CDE04G2941 Ceratophyllum demersum HOM05D007415 ORTHO05D009324 8.0e-49 198.4 251 45.8
AUR62008047 Chenopodium quinoa HOM05D007415 ORTHO05D009324 1.4e-48 197.6 247 46.6
Duzib138G0016 Durio zibethinus HOM05D007415 ORTHO05D009324 2.0e-47 193.7 248 43.5
PSO732G0601 Papaver somniferum HOM05D007415 ORTHO05D009324 4.1e-45 186.0 262 43.9
PGSC0003DMG400020290 Solanum tuberosum HOM05D007415 ORTHO05D009324 2.3e-40 170.2 141 59.6
Phvul.009G118400 Phaseolus vulgaris HOM05D007415 ORTHO05D009324 1.5e-39 167.5 254 43.3
ATR0743G053 Amborella trichopoda HOM05D007415 ORTHO05D009324 6.4e-38 162.2 235 39.6
Haze_04514 Corylus avellana HOM05D007415 ORTHO05D009324 4.0e-32 142.9 146 52.7
Ca_15292_v3 Cicer arietinum L. HOM05D007415 ORTHO05D009324 1.7e-30 137.5 157 49.0
TPR.G38565 Trifolium pratense HOM05D007415 ORTHO05D009324 6.4e-30 135.6 248 36.3
HPP92_001921 Vanilla planifolia HOM05D007415 ORTHO05D009324 4.6e-28 129.4 179 44.1
Pp3c1_28310 Physcomitrium patens HOM05D007415 ORTHO05D009324 1.6e-25 120.9 207 33.3
Mapoly0134s0003 Marchantia polymorpha HOM05D007415 ORTHO05D009324 6.2e-25 119.0 248 33.1
Ah.11g050670 Amaranthus hybridus HOM05D007415 ORTHO05D009324 4.4e-23 112.8 210 38.6
DCAR_017283 Daucus carota HOM05D007415 ORTHO05D009324 4.9e-22 109.4 135 43.7
SalBow2G2324 Salvia bowleyana HOM05D007415 ORTHO05D009324 9.6e-18 95.1 267 30.0
SMO356G0522 Selaginella moellendorffii HOM05D007415 ORTHO05D009324 2.8e-17 93.6 257 28.0
AagrBONN_evm.TU.Sc2ySwM_362.2902 Anthoceros agrestis HOM05D007415 ORTHO05D009324 8.1e-17 92.0 168 34.5
Zm00001eb288240 Zea mays HOM05D007415 ORTHO05D009324 1.3e-14 84.7 116 41.4
PGSC0003DMG400007530 Solanum tuberosum HOM05D007415 ORTHO05D009324 1.9e-13 80.9 78 50.0


User provided reference genes

Program Settings