Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 4.5e-308 1060.4 543 100.0
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 1.1e-192 677.2 546 65.6
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 3.6e-180 635.6 546 61.0
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 4.4e-178 628.6 559 61.5
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 1.3e-177 627.1 559 61.4
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 1.1e-176 624.0 547 61.6
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 4.1e-176 622.1 557 59.2
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 5.9e-175 618.2 546 61.2
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 1.0e-174 617.5 543 61.3
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 2.2e-174 616.3 547 62.9
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 2.2e-174 616.3 551 60.4
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 4.2e-173 612.1 534 61.6
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.5e-170 603.6 540 60.0
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 2.8e-169 599.4 546 59.9
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 3.7e-169 599.0 550 59.1
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 3.5e-167 592.4 546 57.5
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.7e-166 590.1 546 59.0
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 2.2e-166 589.7 558 57.7
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 2.9e-166 589.3 545 59.4
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 5.0e-166 588.6 547 58.1
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 1.1e-165 587.4 551 57.7
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 1.5e-165 587.0 545 57.8
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.9e-165 586.6 546 58.6
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 4.2e-165 585.5 542 58.3
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.2e-164 583.9 551 58.4
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 2.1e-164 583.2 551 58.4
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 6.1e-164 581.6 551 58.3
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 4.0e-163 578.9 689 49.9
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 8.8e-163 577.8 550 56.4
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 1.5e-162 577.0 548 56.9
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 2.6e-162 576.2 550 56.0
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 4.1e-160 568.9 542 56.8
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 5.4e-160 568.5 547 57.4
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 9.1e-160 567.8 544 58.1
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 1.0e-158 564.3 546 55.7
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 2.9e-158 562.8 528 58.7
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 6.5e-158 561.6 547 55.2
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 8.5e-158 561.2 524 58.8
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 2.5e-157 559.7 548 55.3
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 2.1e-156 556.6 546 56.4
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 6.8e-155 551.6 547 55.8
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 1.2e-154 550.8 536 56.9
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 1.5e-154 550.4 541 56.7
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 3.4e-154 549.3 547 55.2
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 1.3e-153 547.4 547 55.2
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 1.3e-153 547.4 547 54.7
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 2.2e-153 546.6 575 52.9
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 2.2e-153 546.6 548 54.9
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 2.2e-153 546.6 547 54.7
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 2.4e-152 543.1 538 56.3
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 7.7e-151 538.1 538 55.2
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 2.9e-150 536.2 540 55.2
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 3.8e-150 535.8 466 61.2
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 2.5e-149 533.1 538 55.2
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 3.3e-149 532.7 540 55.0
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 3.3e-149 532.7 541 55.3
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 1.2e-148 530.8 537 56.2
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 6.1e-148 528.5 538 54.8
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 5.2e-147 525.4 544 53.3
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 1.5e-146 523.9 541 54.2
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 3.4e-146 522.7 508 58.1
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 4.4e-146 522.3 533 53.7
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 8.3e-145 518.1 539 52.7
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 1.1e-144 517.7 541 53.6
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 7.0e-144 515.0 541 52.7
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 2.0e-143 513.5 548 53.5
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 4.6e-143 512.3 544 53.9
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 1.3e-142 510.8 544 53.7
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 2.9e-142 509.6 492 59.1
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 3.9e-142 509.2 540 54.3
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 1.1e-141 507.7 540 54.3
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 1.1e-141 507.7 546 53.3
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 1.2e-140 504.2 533 54.8
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 2.8e-140 503.1 580 50.9
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 6.2e-140 501.9 543 52.7
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 8.0e-140 501.5 540 53.9
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 8.0e-140 501.5 541 51.9
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 1.0e-139 501.1 539 53.2
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 1.0e-139 501.1 539 53.2
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 2.6e-138 496.5 540 51.9
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 4.4e-138 495.7 443 58.7
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 3.2e-136 489.6 541 52.3
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 1.6e-135 487.3 546 50.7
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 3.5e-135 486.1 391 62.4
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 1.2e-130 471.1 548 50.9
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 2.0e-130 470.3 543 49.7
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 1.1e-128 464.5 521 51.6
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.4e-128 464.2 477 54.5
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 3.2e-128 463.0 481 53.0
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 4.6e-127 459.1 541 48.4
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 8.1e-124 448.4 353 62.6
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 8.4e-121 438.3 472 52.3
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 1.9e-117 427.2 552 48.2
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 3.3e-117 426.4 461 51.8
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 3.6e-116 422.9 545 45.7
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 7.3e-109 398.7 386 58.3
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 2.9e-105 386.7 332 61.4
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 2.2e-97 360.5 361 56.5
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 2.1e-95 354.0 557 41.5
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 1.9e-88 330.9 449 43.4
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 3.2e-88 330.1 513 40.7
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 4.8e-84 316.2 561 38.9
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 8.2e-84 315.5 570 39.3
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 3.1e-83 313.5 380 49.5
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 3.1e-83 313.5 281 60.1
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 3.0e-78 297.0 385 45.7
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 2.6e-74 283.9 511 38.7
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 1.8e-70 271.2 217 61.3
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 8.8e-70 268.9 428 38.6
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 3.3e-69 266.9 320 50.9
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 5.7e-69 266.2 277 53.4
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 2.0e-61 241.1 262 49.6
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 5.7e-61 239.6 297 46.1
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 4.5e-58 229.9 266 51.1
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 7.7e-58 229.2 263 51.7
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 4.7e-55 219.9 168 63.7
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 1.4e-54 218.4 413 36.3
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 8.8e-54 215.7 160 65.6
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.3e-52 211.8 196 56.1
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 3.7e-52 210.3 342 41.5
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 1.8e-46 191.4 155 60.6
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 3.5e-42 177.2 164 56.1
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 7.2e-40 169.5 208 46.2
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.6e-39 168.3 122 68.0
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 8.0e-39 166.0 120 67.5
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 2.9e-33 147.5 139 56.1
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.5e-29 135.2 226 42.5
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.1e-22 110.9 235 37.9
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 4.0e-22 110.5 238 37.8
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 2.6e-21 107.8 125 49.6
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 8.6e-17 92.8 108 50.9
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 8.1e-15 86.3 186 36.0
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 1.7e-12 78.6 148 41.9
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 3.2e-11 74.3 94 45.7
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 3.2e-11 74.3 94 45.7
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 1.8e-06 58.5 96 36.5
Actinidia09048 Actinidia chinensis HOM05D005606 ORTHO05D006446 3.1e-06 57.8 81 40.7


User provided reference genes

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