Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02258 Eucalyptus grandis HOM05D006263 ORTHO05D007549 4.1e-198 694.5 344 100.0
Eucgr.L01413 Eucalyptus grandis HOM05D006263 ORTHO05D007549 1.2e-197 693.0 344 99.7
PGR042G1093 Punica granatum HOM05D006263 ORTHO05D007549 1.9e-142 509.6 340 70.0
Eucgr.A02096 Eucalyptus grandis HOM05D006263 ORTHO05D007549 5.6e-139 498.0 294 86.7
CiPaw.10G000900 Carya illinoinensis HOM05D006263 ORTHO05D007549 2.6e-136 489.2 344 68.0
Dinv14580 Davidia involucrata HOM05D006263 ORTHO05D007549 1.7e-135 486.5 341 67.2
Cfa016439 Carpinus fangiana HOM05D006263 ORTHO05D007549 1.6e-133 479.9 342 67.0
Haze_19416 Corylus avellana HOM05D006263 ORTHO05D007549 4.6e-133 478.4 342 67.0
Hund06464 Selenicereus undatus HOM05D006263 ORTHO05D007549 4.6e-133 478.4 343 65.3
Haze_19445 Corylus avellana HOM05D006263 ORTHO05D007549 1.8e-132 476.5 342 66.7
Atru.chr2.1379 Acer truncatum HOM05D006263 ORTHO05D007549 3.0e-132 475.7 342 66.7
GSVIVG01033398001 Vitis vinifera HOM05D006263 ORTHO05D007549 3.0e-132 475.7 335 65.7
Ciclev10020896m.g Citrus clementina HOM05D006263 ORTHO05D007549 3.9e-132 475.3 341 64.8
COL.COLO4_13602 Corchorus olitorius HOM05D006263 ORTHO05D007549 3.9e-132 475.3 340 66.8
QL07p019666 Quercus lobata HOM05D006263 ORTHO05D007549 6.7e-132 474.6 341 66.3
Gohir.A11G259300 Gossypium hirsutum HOM05D006263 ORTHO05D007549 8.7e-132 474.2 344 63.7
Rhsim04G0087300 Rhododendron simsii HOM05D006263 ORTHO05D007549 8.7e-132 474.2 344 65.1
TWI34G1357 Tripterygium wilfordii HOM05D006263 ORTHO05D007549 1.5e-131 473.4 348 64.4
TAR623G0038 Trochodendron aralioides HOM05D006263 ORTHO05D007549 1.5e-131 473.4 344 66.3
Gorai.007G289300 Gossypium raimondii HOM05D006263 ORTHO05D007549 1.9e-131 473.0 344 63.4
Manes.09G141600 Manihot esculenta HOM05D006263 ORTHO05D007549 1.9e-131 473.0 343 65.3
Prupe.7G003700 Prunus persica HOM05D006263 ORTHO05D007549 1.9e-131 473.0 340 64.4
Cc06_g22910 Coffea canephora HOM05D006263 ORTHO05D007549 1.3e-130 470.3 341 65.1
Duzib177G1028 Durio zibethinus HOM05D006263 ORTHO05D007549 1.3e-130 470.3 338 67.2
Gohir.D11G269500 Gossypium hirsutum HOM05D006263 ORTHO05D007549 1.6e-130 469.9 344 63.1
Oeu060008.1 Olea europaea HOM05D006263 ORTHO05D007549 2.1e-130 469.5 336 66.7
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 3.7e-130 468.8 337 65.6
Potri.006G233200 Populus trichocarpa HOM05D006263 ORTHO05D007549 6.2e-130 468.0 346 65.0
Thecc.05G294200 Theobroma cacao HOM05D006263 ORTHO05D007549 6.2e-130 468.0 342 66.4
CANSAT78G2484 Cannabis sativa HOM05D006263 ORTHO05D007549 8.1e-130 467.6 341 66.3
Lj2A357T95 Lonicera japonica HOM05D006263 ORTHO05D007549 4.0e-129 465.3 346 65.0
MD12G1003100 Malus domestica HOM05D006263 ORTHO05D007549 4.0e-129 465.3 346 64.2
Potri.019G034400 Populus trichocarpa HOM05D006263 ORTHO05D007549 1.5e-128 463.4 336 65.5
ClCG05G001960 Citrullus lanatus HOM05D006263 ORTHO05D007549 2.6e-128 462.6 342 63.2
Nn7g35844 Nelumbo nucifera HOM05D006263 ORTHO05D007549 5.8e-128 461.5 346 64.2
HanXRQChr01g0024721 Helianthus annuus HOM05D006263 ORTHO05D007549 2.2e-127 459.5 347 62.8
Psat1g096040 Pisum sativum HOM05D006263 ORTHO05D007549 2.2e-127 459.5 339 64.6
Nitab4.5_0002825g0060 Nicotiana tabacum HOM05D006263 ORTHO05D007549 6.5e-127 458.0 336 64.0
CSS0025413 Camellia sinensis var. sinensis HOM05D006263 ORTHO05D007549 8.4e-127 457.6 341 63.0
C09p58780 Brassica napus HOM05D006263 ORTHO05D007549 1.1e-126 457.2 335 62.4
Medtr6g029470 Medicago truncatula HOM05D006263 ORTHO05D007549 5.5e-126 454.9 343 66.2
MELO3C006156.2 Cucumis melo HOM05D006263 ORTHO05D007549 9.3e-126 454.1 344 61.3
BolC9t58720H Brassica oleracea HOM05D006263 ORTHO05D007549 1.2e-125 453.8 336 62.2
A10p21320 Brassica napus HOM05D006263 ORTHO05D007549 1.6e-125 453.4 335 62.4
Lalb_Chr06g0173981 Lupinus albus HOM05D006263 ORTHO05D007549 1.6e-125 453.4 344 63.4
Sabra19G0044500 Salix brachista HOM05D006263 ORTHO05D007549 1.6e-125 453.4 336 63.7
Nitab4.5_0000001g0100 Nicotiana tabacum HOM05D006263 ORTHO05D007549 2.1e-125 453.0 336 63.4
RcHm_v2.0_Chr3g0497171 Rosa chinensis HOM05D006263 ORTHO05D007549 2.7e-125 452.6 342 62.6
VMungo0464G2181 Vigna mungo HOM05D006263 ORTHO05D007549 2.7e-125 452.6 339 63.4
BraA10t44195Z Brassica rapa HOM05D006263 ORTHO05D007549 3.5e-125 452.2 335 61.8
Sp6g26120 Schrenkiella parvula HOM05D006263 ORTHO05D007549 3.5e-125 452.2 335 62.1
BcaC04g18720 Brassica carinata HOM05D006263 ORTHO05D007549 6.0e-125 451.4 335 61.8
Lsat_1_v5_gn_1_59641 Lactuca sativa HOM05D006263 ORTHO05D007549 6.0e-125 451.4 342 60.2
Phvul.004G080400 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 6.0e-125 451.4 340 63.5
Solyc10g050850.2 Solanum lycopersicum HOM05D006263 ORTHO05D007549 6.0e-125 451.4 336 63.7
CAN.G216.5 Capsicum annuum HOM05D006263 ORTHO05D007549 7.9e-125 451.1 336 63.7
Lj6g0008715 Lotus japonicus HOM05D006263 ORTHO05D007549 1.0e-124 450.7 339 63.1
Carub.0006s1648 Capsella rubella HOM05D006263 ORTHO05D007549 1.3e-124 450.3 331 62.8
PGSC0003DMG400008259 Solanum tuberosum HOM05D006263 ORTHO05D007549 1.3e-124 450.3 336 64.0
Migut.B01469 Erythranthe guttata HOM05D006263 ORTHO05D007549 2.3e-124 449.5 338 62.1
Aqoxy1G00489 Aquilegia oxysepala HOM05D006263 ORTHO05D007549 3.9e-124 448.7 343 63.6
Sopen10g022420 Solanum pennellii HOM05D006263 ORTHO05D007549 3.9e-124 448.7 336 63.4
DCAR_013689 Daucus carota HOM05D006263 ORTHO05D007549 6.7e-124 448.0 340 61.2
Thhalv10013996m.g Eutrema salsugineum HOM05D006263 ORTHO05D007549 6.7e-124 448.0 335 61.2
THA.LOC104827270 Tarenaya hassleriana HOM05D006263 ORTHO05D007549 6.7e-124 448.0 333 63.7
Ca_04490_v3 Cicer arietinum L. HOM05D006263 ORTHO05D007549 1.1e-123 447.2 341 63.0
BcaB08g36696 Brassica carinata HOM05D006263 ORTHO05D007549 1.9e-123 446.4 335 61.5
Glyma.16G153300 Glycine max HOM05D006263 ORTHO05D007549 2.5e-123 446.0 334 63.5
AT5G18200 Arabidopsis thaliana HOM05D006263 ORTHO05D007549 4.3e-123 445.3 335 60.9
PSO384G1918 Papaver somniferum HOM05D006263 ORTHO05D007549 4.3e-123 445.3 338 63.6
unitig_26.g9717 Utricularia gibba HOM05D006263 ORTHO05D007549 5.7e-123 444.9 334 61.7
PSO339G1401 Papaver somniferum HOM05D006263 ORTHO05D007549 7.4e-123 444.5 339 63.4
AL6G29400 Arabidopsis lyrata HOM05D006263 ORTHO05D007549 9.6e-123 444.1 335 61.8
AUR62012878 Chenopodium quinoa HOM05D006263 ORTHO05D007549 8.2e-122 441.0 338 62.4
MSTRG.20649 Avicennia marina HOM05D006263 ORTHO05D007549 1.1e-121 440.7 334 60.8
SGA_v2.0_scaffold145G36025 Striga asiatica HOM05D006263 ORTHO05D007549 2.4e-121 439.5 339 59.0
CARHR194860 Cardamine hirsuta HOM05D006263 ORTHO05D007549 3.1e-121 439.1 337 59.9
AUR62027102 Chenopodium quinoa HOM05D006263 ORTHO05D007549 6.9e-121 438.0 337 62.6
FvH4_1g28080 Fragaria vesca HOM05D006263 ORTHO05D007549 2.0e-120 436.4 336 61.6
TAR369G0989 Trochodendron aralioides HOM05D006263 ORTHO05D007549 2.0e-120 436.4 343 63.0
FAN23G2537 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.6e-120 436.0 336 61.0
FAN19G0970 Fragaria x ananassa HOM05D006263 ORTHO05D007549 4.5e-120 435.3 336 61.3
Sabra19G0042300 Salix brachista HOM05D006263 ORTHO05D007549 1.3e-119 433.7 382 56.3
FAN28G0550 Fragaria x ananassa HOM05D006263 ORTHO05D007549 6.5e-119 431.4 336 61.0
FAN26G0246 Fragaria x ananassa HOM05D006263 ORTHO05D007549 4.2e-118 428.7 336 60.7
FAN28G1368 Fragaria x ananassa HOM05D006263 ORTHO05D007549 7.2e-118 427.9 336 60.1
HPP92_015639 Vanilla planifolia HOM05D006263 ORTHO05D007549 7.2e-118 427.9 345 58.8
ECA285G0004 Erigeron canadensis HOM05D006263 ORTHO05D007549 2.1e-117 426.4 346 59.0
CDE02G1162 Ceratophyllum demersum HOM05D006263 ORTHO05D007549 3.5e-117 425.6 340 60.3
Aa31LG11G11400 Aethionema arabicum HOM05D006263 ORTHO05D007549 6.1e-117 424.9 367 56.1
Peaxi162Scf00076g01055 Petunia axillaris HOM05D006263 ORTHO05D007549 2.5e-115 419.5 336 59.8
EL10Ac9g22064 Beta vulgaris HOM05D006263 ORTHO05D007549 5.9e-112 408.3 344 59.0
Ca_04491_v3 Cicer arietinum L. HOM05D006263 ORTHO05D000429 1.7e-111 406.8 335 57.6
Psat1g096000 Pisum sativum HOM05D006263 ORTHO05D007549 5.0e-111 405.2 334 58.4
ATR0697G038 Amborella trichopoda HOM05D006263 ORTHO05D007549 1.4e-110 403.7 381 53.5
Zm00001eb301000 Zea mays HOM05D006263 ORTHO05D007549 3.6e-109 399.1 344 55.2
Actinidia17306 Actinidia chinensis HOM05D000412 ORTHO05D000429 1.8e-108 396.7 294 63.3
TPR.G34629 Trifolium pratense HOM05D006263 ORTHO05D007549 5.1e-108 395.2 338 56.2
SalBow5G0264 Salvia bowleyana HOM05D006263 ORTHO05D007549 8.8e-108 394.4 338 55.6
Sc18g0007080 Simmondsia chinensis HOM05D006263 ORTHO05D007549 1.7e-106 390.2 342 57.3
vmacro09144 Vaccinium macrocarpon HOM05D006263 ORTHO05D007549 2.4e-105 386.3 340 56.2
Ah.01g007390 Amaranthus hybridus HOM05D006263 ORTHO05D007549 6.9e-105 384.8 436 47.0
Cpa.g.sc51.112 Carica papaya HOM05D006263 ORTHO05D007549 1.5e-104 383.6 348 56.6
Medtr6g029530 Medicago truncatula HOM05D006263 ORTHO05D007549 8.5e-103 377.9 335 54.3
Oeu003888.1 Olea europaea HOM05D006263 ORTHO05D007549 7.4e-99 364.8 263 66.5
MBI11_g31289_MAGBIO Magnolia biondii HOM05D006263 ORTHO05D007549 2.8e-98 362.8 349 53.9
SEGI_37923 Sequoiadendron giganteum HOM05D006263 ORTHO05D007549 3.8e-95 352.4 338 50.6
CsaV3_3G009370 Cucumis sativus L. HOM05D006263 ORTHO05D007549 1.3e-90 337.4 257 61.1
Sed0020840 Sechium edule HOM05D006263 ORTHO05D007549 4.8e-90 335.5 258 60.9
Os07g0171200 Oryza sativa ssp. japonica HOM05D006263 ORTHO05D007549 1.2e-80 304.3 229 60.3
Hma1.2p1_0376F.1_g139140 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 2.0e-75 287.0 193 69.9
Hma1.2p1_0376F.1_g139150 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 5.7e-75 285.4 183 72.7
Mapoly0103s0062 Marchantia polymorpha HOM05D006263 ORTHO05D007549 2.8e-69 266.5 340 39.1
Pp3c17_20460 Physcomitrium patens HOM05D006263 ORTHO05D007549 1.8e-68 263.8 344 37.2
SMO367G0539 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 1.2e-61 241.1 349 38.4
FAN16G0439 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.6e-59 233.4 205 57.6
FAN18G1683 Fragaria x ananassa HOM05D000349 ORTHO05D007549 5.6e-46 189.1 200 50.0
RhsimUnG0048700 Rhododendron simsii HOM05D006263 ORTHO05D007549 2.1e-45 187.2 179 54.2
Pp3c2_1350 Physcomitrium patens HOM05D006263 ORTHO05D007549 9.9e-43 178.3 264 35.6
FAN06G4136 Fragaria x ananassa HOM05D000349 ORTHO05D007549 4.9e-42 176.0 186 49.5
Hma1.2p1_0376F.1_g139120 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 1.9e-41 174.1 166 58.4
FAN18G1526 Fragaria x ananassa HOM05D000349 ORTHO05D007549 1.6e-37 161.0 184 47.3
FAN24G0044 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.3e-34 151.4 207 41.5
TPR.G18346 Trifolium pratense HOM05D006263 ORTHO05D007549 2.7e-24 117.1 81 63.0
SMO275G0019 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 1.5e-19 101.3 129 39.5
FAN03G3217 Fragaria x ananassa HOM05D002676 ORTHO05D003194 2.7e-16 90.5 60 68.3
FAN11G1140 Fragaria x ananassa HOM05D002676 ORTHO05D003194 2.7e-16 90.5 60 68.3
FAN22G0360 Fragaria x ananassa HOM05D002676 ORTHO05D003194 2.7e-16 90.5 60 68.3
FAN22G1437 Fragaria x ananassa HOM05D002676 ORTHO05D007549 2.3e-15 87.4 60 66.7
SMO367G0580 Selaginella moellendorffii HOM05D006263 ORTHO05D378923 3.0e-15 87.0 107 40.2
FAN15G0659 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.6e-13 81.3 109 41.3
FAN08G1181 Fragaria x ananassa HOM05D003914 ORTHO05D001189 1.4e-12 78.2 76 51.3
FAN27G3525 Fragaria x ananassa HOM05D003914 ORTHO05D001189 1.4e-12 78.2 76 51.3
FAN25G1138 Fragaria x ananassa HOM05D012843 ORTHO05D017973 9.0e-12 75.5 80 47.5
FAN22G0951 Fragaria x ananassa HOM05D000005 ORTHO05D000294 2.0e-11 74.3 80 47.5
FAN12G3135 Fragaria x ananassa HOM05D000005 ORTHO05D000294 3.4e-11 73.6 80 46.2
FAN09G2057 Fragaria x ananassa HOM05D000005 ORTHO05D000294 4.6e-08 63.2 60 53.3
Phvul.004G082000 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 4.6e-08 63.2 59 50.8
FAN22G2156 Fragaria x ananassa HOM05D002676 ORTHO05D003194 6.0e-08 62.8 69 46.4


User provided reference genes

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