Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1693.7 882 100.0
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1311.6 878 78.2
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1290.0 883 76.8
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1290.0 890 76.2
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1283.1 875 76.9
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1282.7 881 76.0
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1279.2 881 76.7
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1277.3 876 76.3
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1276.2 889 75.8
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1271.9 884 76.5
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1270.0 878 76.1
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1269.2 875 76.2
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1268.4 884 75.8
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1262.7 877 75.9
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1256.9 882 74.7
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1256.1 877 75.4
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1253.4 883 75.8
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1253.0 877 75.1
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1246.9 880 74.3
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1245.7 882 74.0
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1245.3 863 75.2
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1242.6 876 74.4
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1239.6 883 74.0
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1238.4 869 75.4
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1236.5 880 73.9
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1228.0 883 73.3
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1225.7 888 73.6
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1225.3 882 73.5
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1223.8 887 73.5
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1223.4 882 72.9
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1222.6 870 75.1
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1218.8 882 73.1
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1218.0 870 74.5
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1208.4 882 72.2
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1207.2 893 72.3
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1206.8 858 73.7
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1204.1 860 73.7
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1202.2 882 72.9
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1198.0 888 72.7
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1186.8 888 71.4
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1183.3 876 71.7
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1182.9 883 71.1
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1180.6 881 71.4
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1178.7 870 72.4
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1178.3 854 72.6
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1176.0 881 71.2
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1175.6 862 70.9
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1174.5 831 72.8
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1169.5 882 71.0
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1164.1 851 71.7
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1162.5 889 68.7
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1161.7 876 70.2
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1160.6 962 66.9
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1160.2 851 71.3
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1155.6 902 68.7
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1153.3 875 70.9
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1150.2 884 69.2
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1145.6 882 69.4
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1140.9 978 65.6
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1130.2 876 68.7
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1128.2 881 67.5
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1127.1 864 68.4
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1125.9 864 67.7
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1123.2 903 68.1
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1122.5 881 67.0
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1119.8 864 67.7
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1112.8 881 67.2
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1111.3 881 67.1
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1105.9 864 67.5
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1099.3 874 66.7
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1099.3 874 66.7
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1099.0 983 64.0
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1098.2 900 64.7
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1096.3 859 67.8
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 0.0e+00 1096.3 739 77.7
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1088.2 899 64.6
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1087.0 898 64.0
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1085.5 841 67.7
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1084.3 865 65.5
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1083.6 859 66.1
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1077.8 875 65.8
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1075.5 900 63.8
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 6.0e-312 1073.5 961 63.7
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 1.6e-310 1069.3 851 66.0
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 2.7e-310 1068.5 903 63.8
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 6.0e-310 1067.4 905 65.4
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 7.8e-310 1067.0 883 65.5
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 1.0e-309 1066.6 880 65.8
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 5.0e-309 1064.3 859 65.4
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 1.9e-308 1062.4 798 72.1
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 2.6e-305 1052.0 877 66.9
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 1.6e-302 1042.7 898 64.7
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 3.0e-301 1038.5 868 64.1
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 1.5e-300 1036.2 866 64.8
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 1.2e-299 1033.1 920 63.4
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 3.8e-296 1021.5 963 61.2
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.9e-295 1019.2 912 63.2
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 1.9e-292 1009.2 863 62.6
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 3.1e-290 1001.9 875 61.3
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 5.8e-289 997.7 885 62.4
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 8.4e-288 993.8 894 63.0
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 7.1e-287 990.7 880 61.2
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 7.1e-279 964.1 726 71.9
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 3.3e-276 955.3 870 62.1
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 3.4e-273 945.3 854 62.4
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.6e-267 926.4 864 62.2
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 7.1e-263 911.0 996 54.8
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 6.3e-243 844.7 709 64.2
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 7.9e-238 827.8 894 52.8
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 6.3e-227 791.6 719 61.1
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 7.0e-226 788.1 894 51.0
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 8.0e-222 774.6 782 57.2
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.8e-205 720.3 884 48.1
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 2.4e-202 709.9 568 68.1
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 1.7e-200 703.7 559 66.2
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.5e-196 690.6 880 46.6
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 9.2e-194 681.4 564 66.7
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 2.5e-191 673.3 580 64.5
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 4.1e-186 656.0 742 50.9
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 3.6e-182 642.9 835 46.3
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 2.4e-181 640.2 437 78.3
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 3.8e-171 606.3 637 56.0
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.1e-170 604.7 841 46.8
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 6.7e-160 568.9 561 60.2
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 8.7e-152 542.0 388 72.4
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 2.7e-145 520.4 912 38.7
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 2.9e-139 500.4 375 71.2
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 3.8e-131 473.4 395 63.5
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 2.3e-128 464.2 319 75.2
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 1.4e-112 411.8 342 64.3
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 3.6e-105 387.1 312 66.7
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 9.8e-103 379.0 522 46.9
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 2.4e-93 347.8 243 74.1
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 9.8e-87 325.9 363 52.6
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 1.3e-70 272.3 177 77.4
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 2.4e-64 251.5 194 70.6
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 7.3e-58 229.9 143 77.6
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 1.7e-54 218.8 139 77.7
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 8.7e-51 206.5 129 83.7
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 1.5e-50 205.7 160 68.8
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.5e-50 204.9 107 93.5
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 7.6e-47 193.4 137 68.6
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 2.7e-36 158.3 161 56.5
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.3e-34 151.4 158 54.4
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 8.2e-33 146.7 85 81.2
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 1.1e-32 146.4 117 66.7
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 1.8e-32 145.6 104 72.1
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 2.4e-32 145.2 111 66.7
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 3.4e-31 141.4 170 51.8
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 4.5e-31 141.0 80 85.0
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 4.9e-30 137.5 87 71.3
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 6.5e-30 137.1 180 46.7
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 3.2e-29 134.8 93 77.4
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 4.2e-29 134.4 201 36.3
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 9.3e-29 133.3 86 74.4
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.5e-26 125.9 87 72.4
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 6.3e-25 120.6 97 67.0
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 5.3e-24 117.5 125 56.0
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 4.5e-23 114.4 79 68.4
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 5.9e-23 114.0 79 64.6
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 3.8e-22 111.3 81 65.4
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 3.6e-20 104.8 94 61.7
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 2.2e-14 85.5 84 53.6
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 2.2e-14 85.5 84 53.6
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 3.6e-12 78.2 71 57.7
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 1.8e-11 75.9 48 77.1
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 1.1e-10 73.2 56 69.6
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 2.8e-09 68.6 47 72.3


User provided reference genes

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