Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 1.7e-92 342.8 194 100.0
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 4.1e-62 241.9 172 72.1
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 2.7e-61 239.2 169 71.0
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 2.7e-61 239.2 175 69.1
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 3.5e-61 238.8 175 69.7
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 5.9e-61 238.0 181 69.6
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 1.3e-60 236.9 167 70.7
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 1.3e-60 236.9 178 66.3
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 2.2e-60 236.1 182 64.3
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 2.9e-60 235.7 181 67.4
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 2.9e-60 235.7 179 67.0
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 6.5e-60 234.6 181 65.2
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 6.5e-60 234.6 181 66.9
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 6.5e-60 234.6 175 67.4
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 8.5e-60 234.2 181 66.3
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 2.5e-59 232.6 171 66.1
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 2.5e-59 232.6 171 66.7
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 3.2e-59 232.3 174 69.0
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 4.2e-59 231.9 174 69.0
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 5.5e-59 231.5 177 63.8
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 7.2e-59 231.1 174 68.4
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 9.4e-59 230.7 181 66.3
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 1.2e-58 230.3 175 66.9
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 1.6e-58 229.9 170 68.8
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 2.1e-58 229.6 168 69.6
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 2.7e-58 229.2 169 66.9
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 4.7e-58 228.4 179 64.2
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 6.1e-58 228.0 170 65.3
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 6.1e-58 228.0 168 69.0
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 1.4e-57 226.9 178 66.3
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 3.0e-57 225.7 173 67.6
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 4.0e-57 225.3 173 66.5
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 8.8e-57 224.2 181 61.3
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 1.5e-56 223.4 161 68.9
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 4.4e-56 221.9 168 66.7
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 4.4e-56 221.9 161 68.3
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 5.7e-56 221.5 168 65.5
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 1.3e-55 220.3 175 64.6
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 2.8e-55 219.2 205 58.0
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 2.8e-55 219.2 169 62.7
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 2.8e-55 219.2 169 65.7
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 3.7e-55 218.8 180 60.6
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 4.9e-55 218.4 161 67.1
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 4.9e-55 218.4 229 54.1
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 6.3e-55 218.0 159 67.3
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 1.1e-54 217.2 180 61.1
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 2.4e-54 216.1 175 64.0
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 4.1e-54 215.3 161 65.8
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 5.4e-54 214.9 169 62.1
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 9.2e-54 214.2 159 68.6
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 9.2e-54 214.2 209 55.5
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 2.0e-53 213.0 168 62.5
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 2.7e-53 212.6 169 65.7
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 2.7e-53 212.6 172 59.9
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 2.7e-53 212.6 169 63.3
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 4.5e-53 211.8 175 61.7
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 4.5e-53 211.8 177 60.5
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 4.5e-53 211.8 209 55.0
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 5.9e-53 211.5 209 55.0
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 1.7e-52 209.9 180 59.4
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 3.8e-52 208.8 163 63.8
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 8.6e-52 207.6 181 59.1
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 1.9e-51 206.5 163 65.0
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 1.6e-50 203.4 181 58.0
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 1.6e-50 203.4 179 58.1
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 2.8e-50 202.6 196 56.1
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 3.6e-50 202.2 160 65.0
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 4.7e-50 201.8 179 58.1
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 1.0e-49 200.7 181 56.9
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 1.8e-49 199.9 151 64.2
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 4.0e-49 198.7 160 63.8
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 1.2e-48 197.2 179 55.9
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 1.5e-48 196.8 163 62.6
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 3.4e-48 195.7 182 56.0
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 4.4e-48 195.3 181 56.4
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 9.8e-48 194.1 181 56.9
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 2.9e-47 192.6 182 54.4
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 3.7e-47 192.2 182 53.8
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 8.3e-47 191.0 162 59.9
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 8.3e-47 191.0 174 56.9
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 1.4e-46 190.3 163 60.1
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 1.4e-46 190.3 176 55.1
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 1.8e-46 189.9 163 60.1
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 1.8e-46 189.9 182 53.3
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 2.4e-46 189.5 163 60.1
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 1.2e-45 187.2 169 55.0
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 2.0e-45 186.4 152 62.5
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 3.5e-45 185.7 164 59.8
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 7.8e-45 184.5 164 59.1
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 1.0e-44 184.1 173 57.2
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 1.3e-44 183.7 182 52.7
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 1.7e-44 183.3 163 60.7
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 2.3e-44 183.0 163 58.9
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 3.0e-44 182.6 163 59.5
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 3.9e-44 182.2 178 52.8
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 6.6e-44 181.4 163 59.5
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 6.6e-44 181.4 163 59.5
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 1.1e-43 180.6 163 60.7
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 1.1e-43 180.6 163 60.7
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 8.0e-42 174.5 158 56.3
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 8.9e-41 171.0 153 55.6
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 2.6e-40 169.5 162 56.2
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 1.3e-39 167.2 184 50.5
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 9.2e-38 161.0 177 50.8
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 8.6e-36 154.5 134 63.4
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 1.6e-34 150.2 88 79.5
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 3.1e-33 146.0 185 44.3
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 1.2e-29 134.0 117 60.7
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 2.7e-29 132.9 89 68.5
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 6.6e-28 128.3 125 55.2
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 4.7e-18 95.5 171 34.5
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 1.4e-17 94.0 189 31.7
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 1.2e-16 90.9 175 33.1
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 2.9e-15 86.3 99 52.5
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 6.6e-12 75.1 120 37.5
Ca_19566_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 3.4e-08 62.8 44 65.9


User provided reference genes

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