Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 1.5e-119 433.0 231 100.0
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 8.0e-81 304.3 233 69.5
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 1.3e-78 297.0 233 68.7
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 6.3e-78 294.7 233 67.0
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 1.4e-77 293.5 233 67.0
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 4.1e-77 292.0 233 67.0
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 2.3e-75 286.2 233 66.1
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 1.5e-74 283.5 234 65.0
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 1.9e-74 283.1 232 65.5
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 1.9e-74 283.1 230 67.4
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 4.3e-74 282.0 232 65.9
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 3.6e-73 278.9 234 72.2
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 8.0e-73 277.7 236 64.0
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 1.0e-72 277.3 231 64.5
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.8e-72 276.6 233 65.2
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 3.0e-72 275.8 233 64.4
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 6.8e-72 274.6 232 65.1
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.2e-71 273.9 236 62.3
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.5e-71 273.5 229 65.1
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.5e-71 273.5 234 64.5
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 2.0e-71 273.1 233 63.9
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 3.4e-71 272.3 229 64.6
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 7.5e-71 271.2 233 62.2
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.2e-70 269.6 234 63.7
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 3.7e-70 268.9 233 62.7
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 3.7e-70 268.9 230 64.3
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 3.7e-70 268.9 237 61.6
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 4.9e-70 268.5 233 63.1
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.9e-70 268.5 208 67.8
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.9e-70 268.5 208 67.8
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 4.9e-70 268.5 230 59.6
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 8.3e-70 267.7 234 61.5
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 8.3e-70 267.7 234 61.5
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.9e-69 266.5 208 67.8
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 7.0e-69 264.6 234 62.0
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.0e-69 264.6 234 61.1
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.6e-68 263.5 241 60.6
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 2.0e-68 263.1 242 58.7
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 7.8e-68 261.2 247 60.7
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 3.0e-67 259.2 230 60.9
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.9e-67 258.8 234 59.4
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 1.1e-66 257.3 250 58.8
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 1.1e-66 257.3 314 49.7
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 5.6e-66 255.0 233 61.4
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 8.0e-65 251.1 236 58.9
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 4.0e-64 248.8 187 68.4
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 2.6e-63 246.1 232 60.3
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.9e-62 242.7 231 59.3
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 1.1e-61 240.7 186 69.4
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 1.1e-61 240.7 231 59.3
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 1.9e-61 240.0 231 59.7
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.6e-60 236.9 243 57.2
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 2.7e-60 236.1 228 60.1
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 3.5e-60 235.7 233 59.2
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 6.0e-60 235.0 226 57.1
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 1.0e-59 234.2 241 57.3
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 1.3e-59 233.8 223 57.4
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 1.7e-59 233.4 224 59.8
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.7e-59 233.4 238 57.6
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 3.0e-59 232.6 223 58.3
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 3.0e-59 232.6 223 58.3
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 1.1e-58 230.7 235 59.6
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 5.6e-58 228.4 327 45.6
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 7.3e-58 228.0 234 56.8
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 9.5e-58 227.6 231 57.6
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 1.1e-56 224.2 223 57.0
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 1.1e-56 224.2 227 55.1
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.1e-56 224.2 220 56.8
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.8e-56 223.4 221 57.9
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 2.3e-56 223.0 239 56.1
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 3.1e-56 222.6 201 60.2
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 3.1e-56 222.6 240 55.8
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 5.2e-56 221.9 219 58.0
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 1.2e-55 220.7 227 55.5
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 1.2e-55 220.7 203 58.6
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.6e-55 219.5 176 67.0
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 9.9e-55 217.6 235 55.3
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 9.9e-55 217.6 235 55.7
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 1.7e-54 216.9 228 54.8
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 4.9e-54 215.3 235 54.9
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 4.9e-54 215.3 234 54.3
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 8.3e-54 214.5 233 53.6
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.1e-53 214.2 242 54.1
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.9e-53 213.4 219 57.5
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.9e-53 213.4 173 65.9
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 2.4e-53 213.0 203 59.1
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 5.4e-53 211.8 276 48.9
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 4.6e-52 208.8 219 57.1
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 7.8e-52 208.0 253 52.2
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 1.7e-51 206.8 223 57.0
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.9e-51 205.7 210 58.1
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 6.6e-51 204.9 240 52.9
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 8.6e-51 204.5 240 52.1
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 1.1e-50 204.1 149 70.5
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 2.5e-50 203.0 255 51.0
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 3.3e-50 202.6 233 52.8
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 5.6e-50 201.8 240 52.5
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 7.3e-50 201.4 242 52.9
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 1.2e-49 200.7 224 53.6
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 2.1e-49 199.9 183 57.9
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 3.6e-49 199.1 234 53.8
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 3.6e-49 199.1 185 57.8
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 1.1e-48 197.6 234 53.4
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 1.4e-48 197.2 191 56.5
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 1.8e-48 196.8 236 51.7
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 2.4e-48 196.4 231 51.5
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 2.0e-47 193.4 222 52.7
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 2.6e-47 193.0 228 50.9
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.3e-46 190.7 226 52.2
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.3e-46 190.7 239 53.1
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 1.7e-46 190.3 186 58.6
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 2.9e-46 189.5 266 45.1
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 4.9e-46 188.7 233 52.8
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 1.1e-45 187.6 233 49.8
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.4e-45 187.2 191 56.5
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.4e-45 187.2 232 48.7
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 2.4e-45 186.4 202 54.0
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 3.2e-45 186.0 244 49.2
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 5.4e-45 185.3 213 51.2
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 7.1e-45 184.9 208 53.8
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 2.1e-44 183.3 239 49.4
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 1.0e-43 181.0 208 50.5
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 2.3e-43 179.9 208 50.0
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 2.3e-43 179.9 208 50.0
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 2.5e-42 176.4 205 53.2
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 4.3e-42 175.6 222 49.5
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 4.3e-42 175.6 206 51.9
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 4.3e-42 175.6 245 46.1
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 5.6e-42 175.3 234 48.3
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 1.2e-41 174.1 225 50.2
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 1.2e-41 174.1 228 50.4
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 2.1e-41 173.3 234 48.7
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 4.7e-41 172.2 202 49.5
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 6.2e-41 171.8 245 48.6
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.1e-40 171.0 187 49.7
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 6.9e-40 168.3 244 44.7
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 2.0e-39 166.8 234 47.4
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 3.4e-39 166.0 177 53.7
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 2.2e-38 163.3 132 65.9
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 2.2e-38 163.3 199 49.2
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 4.9e-38 162.2 150 58.0
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 3.2e-37 159.5 237 46.4
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 5.4e-37 158.7 202 47.5
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 9.3e-37 157.9 194 50.0
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 2.1e-36 156.8 223 44.4
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 6.0e-36 155.2 227 47.6
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 1.7e-35 153.7 162 56.2
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 4.3e-34 149.1 169 52.7
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 4.8e-33 145.6 89 76.4
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 8.1e-33 144.8 125 60.8
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 8.1e-33 144.8 116 57.8
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 3.1e-32 142.9 100 69.0
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 2.6e-31 139.8 85 78.8
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 2.6e-31 139.8 85 78.8
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 2.9e-30 136.3 155 54.2
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 5.1e-27 125.6 138 50.0
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 7.4e-26 121.7 88 69.3
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 1.6e-25 120.6 109 59.6
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 3.7e-25 119.4 81 67.9
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 6.9e-24 115.2 165 44.2
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.5e-18 97.4 226 35.4
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 5.6e-18 95.5 166 38.6
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 6.2e-17 92.0 88 50.0
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.8e-11 73.9 78 48.7
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 2.5e-10 70.1 40 80.0
QL09p050907 Quercus lobata HOM05D004056 ORTHO05D004894 2.8e-09 66.6 89 47.2
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 6.3e-09 65.5 97 39.2
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 4.1e-08 62.8 43 65.1
Dinv28834 Davidia involucrata HOM05D004056 ORTHO05D183586 6.9e-08 62.0 81 51.9


User provided reference genes

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