Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 1.1e-224 783.1 439 100.0
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 8.4e-63 245.4 486 44.2
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 1.4e-62 244.6 462 46.1
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 1.4e-62 244.6 478 44.8
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 4.6e-61 239.6 461 47.3
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 1.0e-60 238.4 445 42.0
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 3.6e-58 229.9 455 44.2
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 8.1e-58 228.8 444 40.8
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 1.4e-57 228.0 465 43.9
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 9.0e-57 225.3 464 43.3
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.3e-55 221.5 465 42.4
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 1.4e-54 218.0 459 38.1
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 9.3e-54 215.3 464 42.5
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 1.6e-53 214.5 438 39.5
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 2.7e-53 213.8 458 40.6
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 3.9e-52 209.9 446 38.6
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 4.8e-50 203.0 478 41.4
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 6.2e-50 202.6 447 39.6
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 3.4e-48 196.8 441 42.4
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 5.8e-48 196.1 476 39.1
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 1.4e-46 191.4 457 44.6
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 4.6e-45 186.4 438 42.7
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 6.0e-45 186.0 392 39.8
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 1.8e-44 184.5 438 41.3
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 1.8e-44 184.5 439 42.6
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 3.0e-44 183.7 390 40.5
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 1.9e-43 181.0 457 34.6
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 4.3e-43 179.9 458 38.4
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 2.1e-42 177.6 464 34.7
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 2.8e-42 177.2 495 36.4
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 4.8e-42 176.4 481 36.2
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 6.2e-42 176.0 455 39.8
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 6.2e-42 176.0 455 39.8
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 6.2e-42 176.0 449 39.4
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 8.2e-42 175.6 271 47.6
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 1.1e-41 175.3 386 38.9
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.4e-40 170.2 448 40.0
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 5.8e-40 169.5 438 33.8
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 3.8e-39 166.8 458 35.6
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 5.0e-39 166.4 412 34.0
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 1.1e-38 165.2 460 35.2
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 1.9e-38 164.5 448 35.5
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 2.5e-38 164.1 469 32.6
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 3.5e-37 160.2 473 36.8
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.9e-36 156.8 131 61.8
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 6.7e-36 156.0 262 46.2
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 1.9e-35 154.5 442 35.5
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 3.3e-35 153.7 138 58.7
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 4.3e-35 153.3 155 52.9
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 2.2e-34 151.0 262 45.8
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 2.8e-34 150.6 328 38.4
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 3.7e-34 150.2 174 52.3
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 6.3e-34 149.4 133 59.4
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 6.3e-34 149.4 133 59.4
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 6.3e-34 149.4 334 37.1
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.1e-33 148.7 340 35.9
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 3.1e-33 147.1 451 36.6
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.1e-33 147.1 276 43.1
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 2.0e-32 144.4 370 37.0
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 4.5e-32 143.3 465 35.1
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 4.5e-32 143.3 465 35.1
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 5.9e-32 142.9 387 34.6
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 5.9e-32 142.9 280 41.4
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 7.7e-32 142.5 206 48.1
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 1.0e-31 142.1 438 38.1
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 1.3e-31 141.7 332 39.8
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.7e-31 141.4 227 49.3
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 1.7e-31 141.4 231 48.1
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 2.2e-31 141.0 464 34.1
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.2e-31 141.0 382 35.9
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.2e-31 141.0 382 35.9
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 6.5e-31 139.4 420 34.8
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 1.1e-30 138.7 451 37.7
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 1.4e-30 138.3 460 33.7
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 1.4e-30 138.3 464 33.0
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.9e-30 137.9 350 34.3
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 1.9e-30 137.9 140 57.9
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.9e-30 137.9 141 56.0
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 5.5e-30 136.3 394 31.7
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 5.5e-30 136.3 228 42.1
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 9.4e-30 135.6 368 35.1
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 1.6e-29 134.8 141 56.7
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 1.6e-29 134.8 235 46.8
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.6e-29 134.8 235 46.8
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 2.7e-29 134.0 443 35.4
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.7e-29 134.0 228 46.9
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 2.7e-29 134.0 296 39.9
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.6e-29 133.7 270 39.3
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 3.6e-29 133.7 459 30.1
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 4.6e-29 133.3 437 33.4
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 5.1e-28 129.8 295 37.3
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 5.1e-28 129.8 300 37.7
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 6.7e-28 129.4 140 56.4
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 6.7e-28 129.4 297 37.0
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.5e-27 128.3 126 61.9
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 3.3e-27 127.1 145 47.6
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 1.7e-26 124.8 436 29.1
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 6.3e-26 122.9 411 36.0
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.1e-25 122.1 130 51.5
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 5.3e-25 119.8 444 31.1
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 9.1e-25 119.0 233 39.9
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 1.2e-24 118.6 120 60.8
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 2.0e-24 117.9 455 32.3
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 2.6e-24 117.5 132 51.5
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 4.5e-24 116.7 262 37.4
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.0e-23 115.5 301 36.2
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 1.7e-23 114.8 120 60.0
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 2.2e-23 114.4 129 54.3
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 2.9e-23 114.0 466 30.3
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 2.9e-23 114.0 386 33.7
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 8.5e-23 112.5 246 39.4
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.4e-22 111.7 126 50.8
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 1.9e-22 111.3 213 42.3
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 5.5e-22 109.8 360 32.5
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 2.7e-21 107.5 344 33.1
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 3.6e-21 107.1 126 48.4
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 4.7e-21 106.7 259 35.5
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 4.7e-21 106.7 130 50.8
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 7.9e-21 105.9 163 40.5
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 1.0e-20 105.5 126 48.4
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 2.3e-20 104.4 137 44.5
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 5.0e-15 86.7 331 36.0
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 2.5e-14 84.3 114 46.5
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 2.5e-14 84.3 50 72.0
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 2.5e-14 84.3 131 42.0
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.0e-12 77.4 410 33.4
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 6.7e-12 76.3 260 28.5
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 2.8e-10 70.9 155 39.4
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 2.4e-09 67.8 123 42.3
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 5.9e-08 63.2 151 38.4
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.3e-07 62.0 126 41.3
AUR62001135 Chenopodium quinoa HOM05D005417 ORTHO05D002591 2.2e-07 61.2 239 29.3
CDE05G3071 Ceratophyllum demersum HOM05D000186 ORTHO05D002329 1.9e-06 58.2 110 32.7
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 3.2e-06 57.4 229 32.8


User provided reference genes

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