Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 7.9e-238 826.6 393 100.0
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 1.8e-128 463.4 374 61.0
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 3.7e-126 455.7 378 60.1
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 2.4e-125 453.0 374 59.1
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 1.9e-122 443.4 381 55.9
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 4.2e-122 442.2 370 58.6
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 2.7e-121 439.5 377 57.6
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 4.6e-121 438.7 338 61.5
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 7.9e-121 438.0 365 57.3
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 1.3e-120 437.2 370 58.6
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 5.1e-120 435.3 375 56.5
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 6.7e-120 434.9 334 62.0
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 2.5e-119 433.0 307 63.8
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 1.6e-118 430.3 283 68.2
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 4.8e-118 428.7 357 56.9
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 8.2e-118 427.9 368 57.6
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 2.4e-117 426.4 307 62.9
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 6.9e-117 424.9 329 60.2
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 9.0e-117 424.5 376 56.4
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 1.2e-116 424.1 363 57.6
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.0e-115 421.0 317 62.1
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.0e-115 421.0 317 62.1
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 2.9e-115 419.5 359 56.5
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 2.9e-115 419.5 283 66.1
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 2.9e-115 419.5 374 55.9
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 7.9e-113 411.4 378 53.7
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 2.3e-112 409.8 377 54.4
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 1.5e-111 407.1 338 55.6
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 1.5e-111 407.1 377 53.3
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.9e-111 406.8 351 56.7
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 3.3e-111 406.0 365 55.6
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 4.3e-111 405.6 283 64.0
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 2.2e-110 403.3 303 61.1
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 4.8e-110 402.1 365 54.8
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 6.3e-110 401.7 303 60.4
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 6.3e-110 401.7 365 54.8
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 6.3e-110 401.7 303 60.4
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 6.3e-110 401.7 360 53.3
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 6.3e-110 401.7 346 55.8
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 8.2e-110 401.4 365 55.1
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 1.1e-109 401.0 312 59.3
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 1.8e-109 400.2 282 65.2
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 3.1e-109 399.4 303 60.4
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 4.1e-109 399.1 289 61.2
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 5.3e-109 398.7 324 56.2
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 9.1e-109 397.9 299 60.9
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 2.6e-108 396.4 360 54.2
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 5.9e-108 395.2 288 61.8
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 2.2e-107 393.3 289 60.2
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 2.9e-107 392.9 440 48.6
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 3.8e-107 392.5 304 57.6
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 5.0e-107 392.1 288 60.4
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 5.0e-107 392.1 320 56.2
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 1.9e-106 390.2 283 60.1
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 1.2e-105 387.5 369 52.8
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 3.6e-105 386.0 283 62.9
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 3.6e-105 386.0 315 59.0
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 7.9e-105 384.8 285 62.8
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 7.9e-105 384.8 295 58.6
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 1.0e-104 384.4 300 59.3
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 1.0e-104 384.4 339 56.0
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 1.4e-104 384.0 375 50.9
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 5.1e-104 382.1 285 62.1
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 4.4e-103 379.0 285 62.1
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 5.7e-103 378.6 282 61.7
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 5.7e-103 378.6 282 61.7
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 5.7e-103 378.6 331 55.3
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 9.7e-103 377.9 367 52.0
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 6.3e-102 375.2 293 59.0
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 1.1e-101 374.4 301 60.5
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 3.1e-101 372.9 286 61.5
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 3.1e-101 372.9 284 60.9
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 2.0e-100 370.2 282 60.6
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 5.9e-100 368.6 285 59.3
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 1.3e-99 367.5 283 59.0
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 3.8e-99 365.9 302 57.9
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 1.4e-98 364.0 286 59.8
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 7.2e-98 361.7 283 60.8
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 1.6e-97 360.5 287 57.5
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.1e-97 360.1 380 50.0
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 4.7e-97 359.0 328 53.7
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.0e-96 357.8 358 51.1
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 1.4e-96 357.5 370 49.5
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 1.8e-96 357.1 283 59.4
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 3.0e-96 356.3 301 56.8
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 3.0e-96 356.3 289 59.2
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 5.2e-96 355.5 284 57.7
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 1.5e-95 354.0 287 56.4
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.0e-95 353.6 381 48.6
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 2.6e-95 353.2 362 50.8
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.4e-93 347.4 375 49.3
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 1.2e-92 344.4 293 56.0
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 7.7e-92 341.7 284 57.0
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 1.1e-90 337.8 290 54.5
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 2.5e-90 336.7 345 51.0
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 7.2e-90 335.1 288 51.7
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 1.2e-89 334.3 300 52.7
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 7.5e-87 325.1 335 45.7
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 4.8e-86 322.4 332 50.0
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 3.1e-85 319.7 328 50.0
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 3.1e-85 319.7 308 50.3
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 9.1e-85 318.2 362 46.7
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 2.1e-81 307.0 328 48.8
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 2.2e-78 297.0 332 47.0
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 1.4e-77 294.3 289 50.9
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 9.5e-74 281.6 182 68.7
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 1.2e-73 281.2 312 44.9
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 1.4e-72 277.7 293 46.4
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 1.2e-71 274.6 238 54.2
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 2.6e-71 273.5 305 43.3
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 2.8e-70 270.0 308 43.5
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 1.2e-68 264.6 219 56.2
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 5.8e-47 192.6 338 37.3
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 5.4e-45 186.0 124 66.1
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 2.7e-44 183.7 249 37.8
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 3.1e-40 170.2 131 58.8
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 1.0e-35 155.2 103 67.0
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.0e-35 153.7 168 45.8
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 4.9e-30 136.3 132 54.5
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 3.2e-29 133.7 185 41.1
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 4.3e-26 123.2 107 49.5
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 6.2e-25 119.4 102 53.9
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.8e-24 117.9 101 53.5
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.9e-21 107.8 121 47.1
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 9.3e-21 105.5 113 46.9
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 3.5e-20 103.6 184 33.7
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.4e-16 91.7 147 40.8
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.6e-15 87.4 64 53.1
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.9e-13 81.3 100 39.0
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 1.3e-11 75.1 57 54.4
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 2.1e-09 67.8 51 56.9
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 1.8e-08 64.7 45 66.7


User provided reference genes

Program Settings