Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02030 Eucalyptus grandis HOM05D003139 ORTHO05D003540 1.4e-188 662.9 353 100.0
PGR142G1499 Punica granatum HOM05D003139 ORTHO05D003540 8.5e-66 255.0 264 61.4
CiPaw.10G010300 Carya illinoinensis HOM05D003139 ORTHO05D003540 7.0e-52 208.8 247 55.5
CiPaw.09G014800 Carya illinoinensis HOM05D003139 ORTHO05D003540 3.5e-51 206.5 256 53.9
MD14G1023600 Malus domestica HOM05D003139 ORTHO05D003540 5.5e-49 199.1 254 53.9
Gohir.A04G062300 Gossypium hirsutum HOM05D003139 ORTHO05D003540 2.3e-47 193.7 277 49.8
ClCG10G018920 Citrullus lanatus HOM05D003139 ORTHO05D003540 4.0e-47 193.0 241 53.5
CANSAT64G2974 Cannabis sativa HOM05D003139 ORTHO05D003540 2.0e-46 190.7 262 51.1
Haze_19619 Corylus avellana HOM05D003139 ORTHO05D003540 9.8e-46 188.3 249 52.2
FAN05G0400 Fragaria x ananassa HOM05D003139 ORTHO05D003540 1.7e-45 187.6 251 49.8
FAN05G1773 Fragaria x ananassa HOM05D003139 ORTHO05D003540 1.7e-45 187.6 251 49.8
Duzib093G1338 Durio zibethinus HOM05D003139 ORTHO05D003540 2.8e-45 186.8 261 51.3
FvH4_6g18850 Fragaria vesca HOM05D003139 ORTHO05D003540 2.8e-45 186.8 251 49.8
Gohir.D04G099100 Gossypium hirsutum HOM05D003139 ORTHO05D003540 2.8e-45 186.8 277 49.5
Gorai.009G401500 Gossypium raimondii HOM05D003139 ORTHO05D003540 2.8e-45 186.8 277 49.5
Glyma.03G196500 Glycine max HOM05D003139 ORTHO05D003540 1.1e-44 184.9 225 54.2
FAN14G1758 Fragaria x ananassa HOM05D003139 ORTHO05D003540 1.4e-44 184.5 251 49.4
Duzib106G1991 Durio zibethinus HOM05D003139 ORTHO05D003540 1.8e-44 184.1 265 51.3
Prupe.7G109200 Prunus persica HOM05D003139 ORTHO05D003540 1.8e-44 184.1 305 46.6
Cfa016615 Carpinus fangiana HOM05D003139 ORTHO05D003540 2.4e-44 183.7 249 51.4
FAN09G1837 Fragaria x ananassa HOM05D003139 ORTHO05D003540 2.4e-44 183.7 251 49.8
TWI53G0306 Tripterygium wilfordii HOM05D003139 ORTHO05D003540 2.4e-44 183.7 270 48.9
Manes.08G025900 Manihot esculenta HOM05D003139 ORTHO05D003540 9.2e-44 181.8 262 50.8
CsaV3_3G037330 Cucumis sativus L. HOM05D003139 ORTHO05D003540 1.2e-43 181.4 220 54.5
COL.COLO4_29723 Corchorus olitorius HOM05D003139 ORTHO05D003540 1.6e-43 181.0 294 48.3
Gohir.A01G206000 Gossypium hirsutum HOM05D003139 ORTHO05D003540 2.0e-43 180.6 262 51.5
Gorai.002G239600 Gossypium raimondii HOM05D003139 ORTHO05D003540 4.5e-43 179.5 262 51.5
Gohir.D01G195400 Gossypium hirsutum HOM05D003139 ORTHO05D003540 5.9e-43 179.1 262 51.5
Gohir.A09G139500 Gossypium hirsutum HOM05D003139 ORTHO05D003540 7.8e-43 178.7 263 49.0
Gohir.D09G135100 Gossypium hirsutum HOM05D003139 ORTHO05D003540 1.3e-42 177.9 263 48.7
Gorai.006G155000 Gossypium raimondii HOM05D003139 ORTHO05D003540 1.3e-42 177.9 263 48.7
Thecc.05G090100 Theobroma cacao HOM05D003139 ORTHO05D003540 1.3e-42 177.9 264 50.4
FAN02G0223 Fragaria x ananassa HOM05D003139 ORTHO05D003540 3.8e-42 176.4 299 46.8
Potri.006G212800 Populus trichocarpa HOM05D003139 ORTHO05D003540 6.6e-42 175.6 300 44.7
Phvul.001G190700 Phaseolus vulgaris HOM05D003139 ORTHO05D003540 1.5e-41 174.5 257 48.6
Glyma.19G194957 Glycine max HOM05D003139 ORTHO05D003540 3.3e-41 173.3 240 50.8
QL07p038927 Quercus lobata HOM05D003139 ORTHO05D003540 3.3e-41 173.3 250 49.6
MD12G1024700 Malus domestica HOM05D003139 ORTHO05D003540 7.3e-41 172.2 298 45.3
Sed0022451 Sechium edule HOM05D003139 ORTHO05D003540 7.3e-41 172.2 249 49.4
Atru.chr8.1495 Acer truncatum HOM05D003139 ORTHO05D003540 8.0e-40 168.7 262 50.0
Sabra06G0163800 Salix brachista HOM05D003139 ORTHO05D003540 1.8e-39 167.5 303 43.9
TWI74G1218 Tripterygium wilfordii HOM05D003139 ORTHO05D003540 2.3e-39 167.2 269 48.7
ClCG04G010080 Citrullus lanatus HOM05D003139 ORTHO05D003540 8.9e-39 165.2 224 53.1
Ca_08987_v3 Cicer arietinum L. HOM05D003139 ORTHO05D003540 1.2e-38 164.9 253 47.0
Cpa.g.sc5.12 Carica papaya HOM05D003139 ORTHO05D003540 2.6e-38 163.7 265 47.5
Dinv21200 Davidia involucrata HOM05D003139 ORTHO05D003540 3.4e-38 163.3 251 48.6
CsaV3_6G040710 Cucumis sativus L. HOM05D003139 ORTHO05D003540 3.7e-37 159.8 250 48.4
Sc20g0006320 Simmondsia chinensis HOM05D003139 ORTHO05D003540 3.7e-37 159.8 244 44.7
Glyma.10G073600 Glycine max HOM05D003139 ORTHO05D003540 2.4e-36 157.1 238 46.2
Duzib128G1370 Durio zibethinus HOM05D003139 ORTHO05D003540 9.2e-36 155.2 280 45.4
Sed0002377 Sechium edule HOM05D003139 ORTHO05D003540 2.7e-35 153.7 250 44.4
MELO3C009477.2 Cucumis melo HOM05D003139 ORTHO05D003540 3.5e-35 153.3 179 56.4
Eucgr.A02660 Eucalyptus grandis HOM05D003139 ORTHO05D003540 1.0e-34 151.8 246 44.3
Lj1g0000022 Lotus japonicus HOM05D003139 ORTHO05D003540 1.3e-34 151.4 204 50.5
VMungo1383G1679 Vigna mungo HOM05D003139 ORTHO05D003540 1.7e-34 151.0 257 44.4
Potri.016G079500 Populus trichocarpa HOM05D003139 ORTHO05D003540 3.0e-34 150.2 271 45.8
Lalb_Chr25g0288311 Lupinus albus HOM05D003139 ORTHO05D003540 3.9e-34 149.8 231 47.6
Nitab4.5_0000692g0050 Nicotiana tabacum HOM05D003139 ORTHO05D003540 3.9e-34 149.8 296 44.9
Ca_00900_v3 Cicer arietinum L. HOM05D003139 ORTHO05D003540 1.9e-33 147.5 259 44.4
Hma1.2p1_0820F.1_g223870 Hydrangea macrophylla HOM05D003139 ORTHO05D003540 3.3e-33 146.7 316 42.4
Manes.09G054800 Manihot esculenta HOM05D003139 ORTHO05D003540 3.3e-33 146.7 296 42.9
VMungo0720G0359 Vigna mungo HOM05D003139 ORTHO05D003540 3.3e-33 146.7 239 47.3
SalBow5G1418 Salvia bowleyana HOM05D003139 ORTHO05D003540 1.2e-32 144.8 239 46.9
Sp5g09630 Schrenkiella parvula HOM05D003139 ORTHO05D003540 2.1e-32 144.1 280 43.9
MELO3C024549.2 Cucumis melo HOM05D003139 ORTHO05D003540 2.8e-32 143.7 182 52.7
Lj5g0002620 Lotus japonicus HOM05D003139 ORTHO05D003540 2.8e-32 143.7 275 41.8
Sabra16G0085400 Salix brachista HOM05D003139 ORTHO05D003540 3.6e-32 143.3 271 44.3
Sabra16G0087500 Salix brachista HOM05D003139 ORTHO05D003540 3.6e-32 143.3 271 44.3
AT3G52710 Arabidopsis thaliana HOM05D003139 ORTHO05D003540 4.7e-32 142.9 277 44.4
Carub.0005s1916 Capsella rubella HOM05D003139 ORTHO05D003540 6.2e-32 142.5 265 44.2
Glyma.13G154300 Glycine max HOM05D003139 ORTHO05D003540 6.2e-32 142.5 239 46.4
PGR004G2661 Punica granatum HOM05D003139 ORTHO05D003540 6.2e-32 142.5 269 40.5
CSS0031410 Camellia sinensis var. sinensis HOM05D003139 ORTHO05D003540 8.0e-32 142.1 176 55.1
Sopen09g004600 Solanum pennellii HOM05D003139 ORTHO05D003540 8.0e-32 142.1 288 44.4
Ciclev10012256m.g Citrus clementina HOM05D003139 ORTHO05D003540 1.1e-31 141.7 288 42.4
Psat3g032560 Pisum sativum HOM05D003139 ORTHO05D003540 1.1e-31 141.7 263 44.1
EL10Ac7g16909 Beta vulgaris HOM05D003139 ORTHO05D003540 1.4e-31 141.4 239 45.2
Solyc09g009840.1 Solanum lycopersicum HOM05D003139 ORTHO05D003540 3.1e-31 140.2 287 41.8
Oeu025672.1 Olea europaea HOM05D003139 ORTHO05D003540 4.0e-31 139.8 250 44.4
Psat6g080520 Pisum sativum HOM05D003139 ORTHO05D003540 5.2e-31 139.4 233 44.6
Sed0010191 Sechium edule HOM05D003139 ORTHO05D003540 5.2e-31 139.4 255 45.9
Ah.15g090850 Amaranthus hybridus HOM05D003139 ORTHO05D003540 6.8e-31 139.0 219 42.9
Actinidia05423 Actinidia chinensis HOM05D003139 ORTHO05D003540 8.9e-31 138.7 202 48.0
MSTRG.10370 Avicennia marina HOM05D003139 ORTHO05D003540 8.9e-31 138.7 262 42.0
Migut.J01028 Erythranthe guttata HOM05D003139 ORTHO05D003540 1.2e-30 138.3 261 44.1
AUR62028515 Chenopodium quinoa HOM05D003139 ORTHO05D003540 1.5e-30 137.9 216 42.6
AUR62006190 Chenopodium quinoa HOM05D003139 ORTHO05D003540 7.5e-30 135.6 221 41.2
Actinidia31269 Actinidia chinensis HOM05D003139 ORTHO05D003540 9.8e-30 135.2 256 43.4
AL4G32320 Arabidopsis lyrata HOM05D003139 ORTHO05D003540 9.8e-30 135.2 259 42.5
A05p09620 Brassica napus HOM05D003139 ORTHO05D003540 1.7e-29 134.4 259 42.9
Cc06_g05890 Coffea canephora HOM05D003139 ORTHO05D003540 1.7e-29 134.4 249 42.6
Lalb_Chr02g0154921 Lupinus albus HOM05D003139 ORTHO05D003540 1.7e-29 134.4 230 43.0
Nn6g34887 Nelumbo nucifera HOM05D003139 ORTHO05D003540 1.7e-29 134.4 257 40.9
CARHR162580 Cardamine hirsuta HOM05D003139 ORTHO05D003540 2.2e-29 134.0 283 42.0
Aa31LG10G7720 Aethionema arabicum HOM05D003139 ORTHO05D003540 3.7e-29 133.3 282 41.8
Oeu017682.1 Olea europaea HOM05D003139 ORTHO05D003540 3.7e-29 133.3 210 46.2
Oeu047203.1 Olea europaea HOM05D003139 ORTHO05D003540 4.9e-29 132.9 219 45.2
Sp4g18440 Schrenkiella parvula HOM05D003139 ORTHO05D003540 4.9e-29 132.9 226 46.9
TAR369G0615 Trochodendron aralioides HOM05D003139 ORTHO05D003540 4.9e-29 132.9 276 42.8
AT2G36220 Arabidopsis thaliana HOM05D003139 ORTHO05D003540 1.1e-28 131.7 258 43.4
AL5G33470 Arabidopsis lyrata HOM05D003139 ORTHO05D003540 1.9e-28 131.0 291 42.6
Phvul.007G152700 Phaseolus vulgaris HOM05D003139 ORTHO05D003540 1.9e-28 131.0 236 44.1
THA.LOC104827508 Tarenaya hassleriana HOM05D003139 ORTHO05D003540 1.9e-28 131.0 318 39.6
CARHR130460 Cardamine hirsuta HOM05D003139 ORTHO05D003540 2.4e-28 130.6 258 41.5
Thhalv10011162m.g Eutrema salsugineum HOM05D003139 ORTHO05D003540 2.4e-28 130.6 286 42.0
THA.LOC104804904 Tarenaya hassleriana HOM05D003139 ORTHO05D003540 3.2e-28 130.2 264 43.6
TAR633G0951 Trochodendron aralioides HOM05D003139 ORTHO05D003540 4.1e-28 129.8 247 43.7
Oeu056878.1 Olea europaea HOM05D003139 ORTHO05D003540 5.4e-28 129.4 215 47.0
Oeu047862.1 Olea europaea HOM05D003139 ORTHO05D003540 9.2e-28 128.6 252 42.1
Peaxi162Scf00404g00061 Petunia axillaris HOM05D003139 ORTHO05D003540 9.2e-28 128.6 298 40.6
Aqoxy4G02769 Aquilegia oxysepala HOM05D003139 ORTHO05D003540 1.6e-27 127.9 230 42.2
BraA05t19916Z Brassica rapa HOM05D003139 ORTHO05D003540 1.6e-27 127.9 259 40.9
Medtr1g059890 Medicago truncatula HOM05D003139 ORTHO05D003540 3.5e-27 126.7 235 42.1
BcaC02g11724 Brassica carinata HOM05D003139 ORTHO05D003540 6.0e-27 125.9 258 41.5
C04p11930 Brassica napus HOM05D003139 ORTHO05D003540 6.0e-27 125.9 258 41.5
BolC4t22840H Brassica oleracea HOM05D003139 ORTHO05D003540 6.0e-27 125.9 258 41.5
Nn2g14171 Nelumbo nucifera HOM05D003139 ORTHO05D003540 1.3e-26 124.8 258 39.9
PGSC0003DMG400008878 Solanum tuberosum HOM05D003139 ORTHO05D003540 1.7e-26 124.4 291 39.9
SGA_v2.0_scaffold13G06709 Striga asiatica HOM05D003139 ORTHO05D003540 3.9e-26 123.2 263 41.8
TPR.G9897 Trifolium pratense HOM05D003139 ORTHO05D003540 3.9e-26 123.2 237 42.6
Lalb_Chr20g0111681 Lupinus albus HOM05D003139 ORTHO05D003540 5.0e-26 122.9 181 45.9
TPR.G23344 Trifolium pratense HOM05D003139 ORTHO05D003540 5.0e-26 122.9 249 44.2
BcaC07g39636 Brassica carinata HOM05D003139 ORTHO05D003540 6.6e-26 122.5 260 41.9
BcaB02g09375 Brassica carinata HOM05D003139 ORTHO05D003540 2.5e-25 120.6 261 41.0
Migut.L01785 Erythranthe guttata HOM05D003139 ORTHO05D003540 5.6e-25 119.4 238 42.9
C08p27990 Brassica napus HOM05D003139 ORTHO05D003540 7.3e-25 119.0 261 41.4
BolC8t50411H Brassica oleracea HOM05D003139 ORTHO05D003540 7.3e-25 119.0 261 41.4
ECA247G2190 Erigeron canadensis HOM05D003139 ORTHO05D003540 1.2e-24 118.2 181 46.4
BolC4t28004H Brassica oleracea HOM05D003139 ORTHO05D003540 1.6e-24 117.9 276 41.3
DCAR_020744 Daucus carota HOM05D003139 ORTHO05D003540 2.8e-24 117.1 258 39.1
BcaC02g07620 Brassica carinata HOM05D003139 ORTHO05D003540 6.2e-24 115.9 276 41.3
Lsat_1_v5_gn_5_164981 Lactuca sativa HOM05D003139 ORTHO05D003540 6.2e-24 115.9 210 41.9
Lsat_1_v5_gn_9_20601 Lactuca sativa HOM05D003139 ORTHO05D003540 1.8e-23 114.4 186 46.8
Medtr7g104725 Medicago truncatula HOM05D003139 ORTHO05D003540 1.8e-23 114.4 258 40.3
Ah.08g210540 Amaranthus hybridus HOM05D003139 ORTHO05D003540 3.1e-23 113.6 208 40.4
BraA04t18268Z Brassica rapa HOM05D003139 ORTHO05D003540 6.8e-23 112.5 275 39.6
Thhalv10017798m.g Eutrema salsugineum HOM05D003139 ORTHO05D003540 6.8e-23 112.5 241 40.7
Solyc10g083330.1 Solanum lycopersicum HOM05D003139 ORTHO05D003540 8.9e-23 112.1 255 41.6
HanXRQChr08g0229891 Helianthus annuus HOM05D003139 ORTHO05D003540 1.2e-22 111.7 217 41.9
Aa31LG5G21340 Aethionema arabicum HOM05D003139 ORTHO05D003540 1.5e-22 111.3 291 37.1
BcaB01g00349 Brassica carinata HOM05D003139 ORTHO05D003540 1.5e-22 111.3 263 38.4
PGSC0003DMG400028163 Solanum tuberosum HOM05D003139 ORTHO05D003540 2.0e-22 110.9 267 40.4
Sopen10g032810 Solanum pennellii HOM05D003139 ORTHO05D003540 3.4e-22 110.2 267 40.4
A09p45800 Brassica napus HOM05D003139 ORTHO05D003540 1.3e-21 108.2 209 42.6
HanXRQChr01g0010381 Helianthus annuus HOM05D003139 ORTHO05D003540 1.7e-21 107.8 208 39.9
Lsat_1_v5_gn_8_77361 Lactuca sativa HOM05D003139 ORTHO05D003540 4.9e-21 106.3 222 41.4
DCAR_013395 Daucus carota HOM05D003139 ORTHO05D003540 6.4e-21 105.9 177 44.6
BcaB06g28923 Brassica carinata HOM05D003139 ORTHO05D003540 1.1e-20 105.1 273 34.8
BraA09t40041Z Brassica rapa HOM05D003139 ORTHO05D003540 1.4e-20 104.8 263 38.8
Nitab4.5_0001933g0030 Nicotiana tabacum HOM05D003139 ORTHO05D003540 1.9e-20 104.4 280 38.9
ECA248G2961 Erigeron canadensis HOM05D003139 ORTHO05D003540 4.1e-20 103.2 190 41.1
Nitab4.5_0014515g0010 Nicotiana tabacum HOM05D003139 ORTHO05D003540 5.4e-20 102.8 276 39.1
BcaC02g09232 Brassica carinata HOM05D003139 ORTHO05D003540 2.1e-19 100.9 208 39.9
Dinv31692 Davidia involucrata HOM05D003139 ORTHO05D003540 4.6e-19 99.8 248 36.7
SGA_v2.0_scaffold35G14064 Striga asiatica HOM05D003139 ORTHO05D003540 1.0e-18 98.6 186 43.5
BolC4t25610H Brassica oleracea HOM05D003139 ORTHO05D003540 1.7e-18 97.8 133 46.6
CSS0009772 Camellia sinensis var. sinensis HOM05D003139 ORTHO05D003540 2.3e-18 97.4 239 39.3
SGA_v2.0_scaffold184G39967 Striga asiatica HOM05D003139 ORTHO05D003540 2.3e-18 97.4 191 44.0
C04p40300 Brassica napus HOM05D003139 ORTHO05D003540 3.0e-18 97.1 208 38.9
Rhsim04G0132000 Rhododendron simsii HOM05D003139 ORTHO05D003540 3.0e-18 97.1 217 41.0
Actinidia07925 Actinidia chinensis HOM05D003139 ORTHO05D003540 1.1e-17 95.1 230 40.0
Dinv01029 Davidia involucrata HOM05D003139 ORTHO05D003540 1.9e-17 94.4 169 43.2
Dinv10925 Davidia involucrata HOM05D003139 ORTHO05D003540 1.9e-17 94.4 169 43.2
PSO384G0491 Papaver somniferum HOM05D003139 ORTHO05D003540 9.5e-17 92.0 183 39.9
PSO339G1651 Papaver somniferum HOM05D003139 ORTHO05D003540 2.1e-16 90.9 221 33.9
DCAR_009168 Daucus carota HOM05D003139 ORTHO05D003540 3.6e-16 90.1 210 39.5
HanXRQChr04g0109341 Helianthus annuus HOM05D003139 ORTHO05D003540 3.6e-16 90.1 165 41.8
Carub.0004s1798 Capsella rubella HOM05D003139 ORTHO05D003540 8.1e-16 89.0 290 35.2
HanXRQChr04g0109331 Helianthus annuus HOM05D003139 ORTHO05D003540 8.1e-16 89.0 194 40.2
Aqoxy2G01158 Aquilegia oxysepala HOM05D003139 ORTHO05D003540 2.0e-14 84.3 224 36.2
Dinv11834 Davidia involucrata HOM05D003139 ORTHO05D003540 3.4e-14 83.6 173 38.7
HanXRQChr05g0133631 Helianthus annuus HOM05D003139 ORTHO05D003540 2.2e-13 80.9 252 34.1
HPP92_011492 Vanilla planifolia HOM05D003139 ORTHO05D003540 1.1e-12 78.6 182 36.3
CSS0050344 Camellia sinensis var. sinensis HOM05D003139 ORTHO05D003540 1.9e-12 77.8 171 39.2
CDE08G0328 Ceratophyllum demersum HOM05D003139 ORTHO05D003540 2.4e-12 77.4 194 31.4
Hma1.2p1_0874F.1_g231330 Hydrangea macrophylla HOM05D003139 ORTHO05D003540 2.4e-12 77.4 181 35.9
unitig_8.g4968 Utricularia gibba HOM05D003139 ORTHO05D003540 3.2e-12 77.0 158 37.3
Peaxi162Scf00519g00066 Petunia axillaris HOM05D003139 ORTHO05D003540 1.0e-10 72.0 132 39.4
CDE02G4274 Ceratophyllum demersum HOM05D003139 ORTHO05D003540 1.3e-10 71.6 163 33.1
Dinv04999 Davidia involucrata HOM05D003139 ORTHO05D003540 5.1e-10 69.7 70 54.3
SHI12239 Sapria himalayana HOM05D003139 ORTHO05D003540 8.7e-10 68.9 192 36.5
MBI11_g26446_MAGBIO Magnolia biondii HOM05D003139 ORTHO05D003540 3.3e-09 67.0 211 34.6
Nitab4.5_0013140g0010 Nicotiana tabacum HOM05D003139 ORTHO05D003540 6.9e-07 59.3 140 36.4
A04p27750 Brassica napus HOM05D003139 ORTHO05D003540 9.0e-07 58.9 161 37.3
SalBow3G3510 Salvia bowleyana HOM05D003139 ORTHO05D003540 5.8e-06 56.2 90 47.8
Solyc11g006900.1 Solanum lycopersicum HOM05D003139 ORTHO05D003540 9.9e-06 55.5 137 36.5
Sopen11g002810 Solanum pennellii HOM05D003139 ORTHO05D003540 9.9e-06 55.5 137 36.5


User provided reference genes

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