Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 1.0e-173 613.2 287 100.0
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 2.0e-150 535.8 286 87.4
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 3.5e-150 535.0 287 85.4
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 7.7e-150 533.9 287 86.8
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 1.1e-148 530.0 287 86.1
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 1.5e-148 529.6 287 86.4
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 1.9e-148 529.3 286 87.1
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 2.5e-148 528.9 287 86.4
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 3.2e-148 528.5 287 86.4
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 9.4e-148 526.9 287 86.1
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 1.2e-147 526.6 287 86.1
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 1.6e-147 526.2 287 85.0
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 2.1e-147 525.8 287 86.1
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 2.1e-147 525.8 287 85.4
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 6.1e-147 524.2 287 85.0
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 6.1e-147 524.2 287 85.4
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 1.0e-146 523.5 287 85.4
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 1.4e-146 523.1 286 85.3
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 4.0e-146 521.5 286 84.6
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 4.0e-146 521.5 287 85.0
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 4.0e-146 521.5 286 84.3
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 5.2e-146 521.2 287 84.3
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 6.8e-146 520.8 290 83.8
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 8.8e-146 520.4 287 84.0
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 8.8e-146 520.4 287 84.0
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 2.0e-145 519.2 286 85.7
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 2.0e-145 519.2 287 85.4
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 2.0e-145 519.2 287 85.4
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 2.6e-145 518.8 287 85.4
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 2.6e-145 518.8 285 85.3
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 3.4e-145 518.5 287 84.3
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 4.4e-145 518.1 287 83.6
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 5.7e-145 517.7 286 85.3
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 5.7e-145 517.7 286 85.3
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 5.7e-145 517.7 284 84.5
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 7.5e-145 517.3 289 84.1
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 7.5e-145 517.3 286 83.9
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 1.7e-144 516.2 287 83.3
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 1.7e-144 516.2 291 83.8
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 1.7e-144 516.2 287 84.0
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 2.2e-144 515.8 287 84.0
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 2.8e-144 515.4 286 83.9
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 2.8e-144 515.4 287 83.6
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 8.3e-144 513.8 286 83.6
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 8.3e-144 513.8 287 83.6
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 8.3e-144 513.8 287 83.6
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 1.4e-143 513.1 284 84.5
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.8e-143 512.7 284 83.8
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 2.4e-143 512.3 284 84.2
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 3.1e-143 511.9 285 82.8
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 3.1e-143 511.9 287 82.9
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 7.0e-143 510.8 286 81.5
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 2.7e-142 508.8 284 83.1
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 3.5e-142 508.4 286 83.2
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 4.5e-142 508.1 286 81.1
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 7.7e-142 507.3 287 81.9
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 1.0e-141 506.9 276 88.8
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 1.0e-141 506.9 285 83.2
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 1.7e-141 506.1 285 83.5
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 1.7e-141 506.1 286 81.8
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 2.3e-141 505.8 285 82.8
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 3.8e-141 505.0 286 82.5
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 6.5e-141 504.2 286 81.8
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 8.6e-141 503.8 285 82.1
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 5.5e-140 501.1 283 82.3
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 7.2e-140 500.7 287 81.5
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 9.5e-140 500.4 304 79.6
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 1.6e-139 499.6 284 82.0
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 1.6e-139 499.6 284 82.4
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 2.1e-139 499.2 284 81.0
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 3.6e-139 498.4 287 81.5
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 4.7e-139 498.0 288 81.6
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 1.4e-138 496.5 281 82.6
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 1.4e-138 496.5 286 80.8
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 2.3e-138 495.7 281 82.2
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 1.5e-137 493.0 288 81.2
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 1.5e-137 493.0 283 77.7
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 2.6e-137 492.3 275 82.9
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 4.4e-137 491.5 284 81.7
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 5.7e-137 491.1 287 81.5
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 3.7e-136 488.4 286 77.6
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 8.3e-136 487.3 287 80.5
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 2.4e-135 485.7 299 77.6
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 2.4e-135 485.7 287 80.5
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 3.1e-135 485.3 287 79.8
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 4.1e-135 485.0 287 79.4
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 9.2e-135 483.8 281 79.7
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 1.6e-134 483.0 287 80.5
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 3.5e-134 481.9 282 81.2
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 1.3e-133 479.9 287 79.1
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 2.3e-133 479.2 287 77.7
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 2.3e-133 479.2 287 78.0
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 2.9e-133 478.8 287 78.4
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 2.9e-133 478.8 288 79.5
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 3.8e-133 478.4 288 79.2
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 6.6e-133 477.6 287 77.0
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 6.6e-133 477.6 287 77.7
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 6.6e-133 477.6 288 79.2
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 6.6e-133 477.6 288 79.2
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 6.6e-133 477.6 287 77.0
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 1.5e-132 476.5 279 80.3
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 3.3e-132 475.3 331 69.5
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 4.3e-132 474.9 273 80.6
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 5.6e-132 474.6 282 79.1
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 6.1e-131 471.1 286 77.3
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 1.3e-128 463.4 281 76.5
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 1.9e-127 459.5 277 75.5
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 1.9e-127 459.5 250 85.2
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 4.1e-127 458.4 286 73.8
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 2.7e-126 455.7 278 73.4
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 1.1e-124 450.3 288 76.7
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 2.3e-122 442.6 236 86.4
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 3.0e-117 425.6 235 80.0
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 8.6e-117 424.1 284 69.4
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 3.0e-109 399.1 227 84.6
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 8.6e-109 397.5 282 65.2
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 3.6e-107 392.1 280 66.8
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 1.2e-105 387.1 279 66.3
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 3.9e-101 372.1 198 87.9
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 3.3e-100 369.0 221 77.4
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 6.6e-93 344.7 284 60.2
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 2.4e-90 336.3 289 60.2
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 4.6e-86 322.0 275 60.4
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 1.5e-81 307.0 172 84.3
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 4.9e-80 302.0 167 83.8
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 4.0e-74 282.3 310 46.1
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 5.0e-64 248.8 275 45.5
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 3.2e-63 246.1 279 47.7
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 1.2e-62 244.2 285 47.0
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 1.8e-58 230.3 233 51.5
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 2.6e-49 199.9 114 78.9
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 4.8e-43 179.1 103 76.7
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 6.8e-21 105.5 80 65.0
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 2.5e-15 87.0 80 55.0
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 2.8e-14 83.6 52 73.1
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 7.5e-12 75.5 56 60.7
PSO765G0043 Papaver somniferum HOM05D005608 ORTHO05D302623 5.6e-07 59.3 46 63.0


User provided reference genes

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