Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01979 Eucalyptus grandis HOM05D006288 ORTHO05D007416 2.9e-55 218.4 114 100.0
Eucgr.F02878 Eucalyptus grandis HOM05D006288 ORTHO05D007416 3.9e-28 128.3 90 83.3
vmacro18118 Vaccinium macrocarpon HOM05D006288 ORTHO05D007416 2.3e-20 102.4 90 67.8
CSS0016762 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 3.9e-20 101.7 90 66.7
CSS0047986 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 3.9e-20 101.7 90 66.7
Manes.02G062500 Manihot esculenta HOM05D006288 ORTHO05D007416 5.1e-20 101.3 91 64.8
Ca_13697_v3 Cicer arietinum L. HOM05D006288 ORTHO05D007416 1.1e-19 100.1 88 68.2
GSVIVG01036516001 Vitis vinifera HOM05D006288 ORTHO05D007416 1.1e-19 100.1 90 66.7
CSS0015874 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.5e-19 99.8 90 67.8
CSS0028097 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.5e-19 99.8 90 67.8
Rhsim10G0068900 Rhododendron simsii HOM05D006288 ORTHO05D007416 1.5e-19 99.8 90 65.6
Duzib133G0644 Durio zibethinus HOM05D006288 ORTHO05D007416 3.3e-19 98.6 88 68.2
Duzib133G1254 Durio zibethinus HOM05D006288 ORTHO05D007416 3.3e-19 98.6 88 68.2
Lj3g0015520 Lotus japonicus HOM05D006288 ORTHO05D007416 3.3e-19 98.6 88 67.0
Cfa007713 Carpinus fangiana HOM05D006288 ORTHO05D007416 4.3e-19 98.2 88 67.0
Cc07_g04640 Coffea canephora HOM05D006288 ORTHO05D007416 5.6e-19 97.8 90 64.4
Sabra17G0089200 Salix brachista HOM05D006288 ORTHO05D007416 5.6e-19 97.8 99 61.6
TAR629G2245 Trochodendron aralioides HOM05D006288 ORTHO05D007416 5.6e-19 97.8 90 63.3
VMungo0464G1523 Vigna mungo HOM05D006288 ORTHO05D007416 5.6e-19 97.8 90 65.6
Gohir.D12G056100 Gossypium hirsutum HOM05D006288 ORTHO05D007416 7.3e-19 97.4 88 67.0
Gorai.008G059200 Gossypium raimondii HOM05D006288 ORTHO05D007416 7.3e-19 97.4 88 67.0
PSO832G2920 Papaver somniferum HOM05D006288 ORTHO05D007416 7.3e-19 97.4 90 63.3
Dinv34894 Davidia involucrata HOM05D006288 ORTHO05D007416 9.6e-19 97.1 90 64.4
PSO210G6985 Papaver somniferum HOM05D006288 ORTHO05D007416 9.6e-19 97.1 90 62.2
Psat5g210920 Pisum sativum HOM05D006288 ORTHO05D007416 9.6e-19 97.1 88 65.9
PGR004G0851 Punica granatum HOM05D006288 ORTHO05D007416 9.6e-19 97.1 91 61.5
Rhsim08G0078400 Rhododendron simsii HOM05D006288 ORTHO05D007416 9.6e-19 97.1 90 63.3
Sc11g0008960 Simmondsia chinensis HOM05D006288 ORTHO05D007416 9.6e-19 97.1 90 62.2
TPR.G14566 Trifolium pratense HOM05D006288 ORTHO05D007416 1.6e-18 96.3 88 65.9
arahy.Tifrunner.gnm1.ann1.J0I6JM Arachis hypogaea HOM05D006288 ORTHO05D007416 2.1e-18 95.9 87 66.7
Cpa.g.sc14.255 Carica papaya HOM05D006288 ORTHO05D007416 2.1e-18 95.9 87 66.7
Medtr3g034300 Medicago truncatula HOM05D006288 ORTHO05D007416 2.1e-18 95.9 88 65.9
Thecc.10G108100 Theobroma cacao HOM05D005170 ORTHO05D007416 2.1e-18 95.9 89 65.2
Psat5g210840 Pisum sativum HOM05D006288 ORTHO05D007416 2.8e-18 95.5 88 64.8
QL09p029462 Quercus lobata HOM05D006288 ORTHO05D007416 2.8e-18 95.5 88 61.4
Gohir.A12G056700 Gossypium hirsutum HOM05D006288 ORTHO05D007416 3.6e-18 95.1 88 65.9
Psat5g212400 Pisum sativum HOM05D006288 ORTHO05D007416 3.6e-18 95.1 87 66.7
Hma1.2p1_0304F.1_g119265 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 4.8e-18 94.7 91 63.7
Hma1.2p1_0304F.1_g119270 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 4.8e-18 94.7 91 63.7
THA.LOC104805112 Tarenaya hassleriana HOM05D006288 ORTHO05D007416 6.2e-18 94.4 88 67.0
Manes.01G106000 Manihot esculenta HOM05D006288 ORTHO05D007416 8.1e-18 94.0 88 63.6
Prupe.3G247000 Prunus persica HOM05D006288 ORTHO05D007416 8.1e-18 94.0 90 63.3
Hund16253 Selenicereus undatus HOM05D006288 ORTHO05D007416 8.1e-18 94.0 88 62.5
Nitab4.5_0003203g0060 Nicotiana tabacum HOM05D006288 ORTHO05D007416 1.1e-17 93.6 91 61.5
Lalb_Chr21g0318141 Lupinus albus HOM05D006288 ORTHO05D007416 1.4e-17 93.2 88 64.8
Oeu007090.1 Olea europaea HOM05D006288 ORTHO05D007416 1.4e-17 93.2 88 64.8
PGSC0003DMG400026550 Solanum tuberosum HOM05D006288 ORTHO05D007416 1.4e-17 93.2 91 62.6
CSS0029131 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.8e-17 92.8 89 66.3
Phvul.004G044700 Phaseolus vulgaris HOM05D006288 ORTHO05D007416 1.8e-17 92.8 88 63.6
PSO541G1058 Papaver somniferum HOM05D006288 ORTHO05D007416 2.4e-17 92.4 90 62.2
PSO675G0562 Papaver somniferum HOM05D006288 ORTHO05D007416 2.4e-17 92.4 90 61.1
Solyc02g065690.3 Solanum lycopersicum HOM05D006288 ORTHO05D007416 2.4e-17 92.4 91 62.6
Sopen02g015910 Solanum pennellii HOM05D006288 ORTHO05D007416 2.4e-17 92.4 91 62.6
Atru.chr8.595 Acer truncatum HOM05D006288 ORTHO05D007416 3.1e-17 92.0 88 61.4
Glyma.13G051400 Glycine max HOM05D006288 ORTHO05D007416 3.1e-17 92.0 88 63.6
Peaxi162Scf00019g00316 Petunia axillaris HOM05D006288 ORTHO05D007416 3.1e-17 92.0 91 62.6
CiPaw.03G081300 Carya illinoinensis HOM05D006288 ORTHO05D007416 4.0e-17 91.7 88 62.5
ATR0691G027 Amborella trichopoda HOM05D006288 ORTHO05D007416 5.3e-17 91.3 88 61.4
RcHm_v2.0_Chr2g0164421 Rosa chinensis HOM05D006288 ORTHO05D007416 5.3e-17 91.3 88 61.4
Migut.K00879 Erythranthe guttata HOM05D006288 ORTHO05D007416 6.9e-17 90.9 90 61.1
Glyma.19G037000 Glycine max HOM05D006288 ORTHO05D007416 6.9e-17 90.9 88 63.6
CsaV3_4G009920 Cucumis sativus L. HOM05D006288 ORTHO05D007416 2.0e-16 89.4 88 61.4
TWI60G1717 Tripterygium wilfordii HOM05D006288 ORTHO05D007416 2.6e-16 89.0 107 54.2
Actinidia26277 Actinidia chinensis HOM05D006288 ORTHO05D007416 3.4e-16 88.6 82 65.9
Ah.16g100880 Amaranthus hybridus HOM05D006288 ORTHO05D007416 3.4e-16 88.6 88 60.2
BraA06t26742Z Brassica rapa HOM05D006288 ORTHO05D007416 3.4e-16 88.6 90 58.9
C07p39960 Brassica napus HOM05D006288 ORTHO05D007416 5.8e-16 87.8 89 59.6
CANSAT64G2264 Cannabis sativa HOM05D005170 ORTHO05D007416 5.8e-16 87.8 88 61.4
FAN10G3625 Fragaria x ananassa HOM05D006288 ORTHO05D007416 5.8e-16 87.8 86 61.6
MD09G1077100 Malus domestica HOM05D006288 ORTHO05D007416 5.8e-16 87.8 86 62.8
EL10Ac2g04409 Beta vulgaris HOM05D006288 ORTHO05D007416 9.9e-16 87.0 88 60.2
BolC7t44529H Brassica oleracea HOM05D006288 ORTHO05D007416 9.9e-16 87.0 89 58.4
MD17G1067500 Malus domestica HOM05D006288 ORTHO05D007416 9.9e-16 87.0 88 60.2
Carub.0008s0943 Capsella rubella HOM05D006288 ORTHO05D007416 2.9e-15 85.5 84 63.1
FAN14G1171 Fragaria x ananassa HOM05D006288 ORTHO05D007416 2.9e-15 85.5 82 62.2
Nn4g23570 Nelumbo nucifera HOM05D006288 ORTHO05D007416 2.9e-15 85.5 83 61.4
AUR62023135 Chenopodium quinoa HOM05D006288 ORTHO05D007416 4.9e-15 84.7 88 56.8
Actinidia17612 Actinidia chinensis HOM05D006288 ORTHO05D007416 6.4e-15 84.3 90 61.1
Os02g0190900 Oryza sativa ssp. japonica HOM05D006288 ORTHO05D007416 8.4e-15 84.0 90 56.7
Potri.017G106200 Populus trichocarpa HOM05D006288 ORTHO05D007416 8.4e-15 84.0 80 65.0
SGA_v2.0_scaffold30G12393 Striga asiatica HOM05D006288 ORTHO05D007416 8.4e-15 84.0 90 55.6
SalBow7G0779 Salvia bowleyana HOM05D006288 ORTHO05D007416 3.2e-14 82.0 90 57.8
Zm00001eb234970 Zea mays HOM05D006288 ORTHO05D007416 3.2e-14 82.0 88 55.7
MELO3C018910.2 Cucumis melo HOM05D006288 ORTHO05D007416 5.4e-14 81.3 80 61.2
FAN10G2886 Fragaria x ananassa HOM05D006288 ORTHO05D007416 9.3e-14 80.5 90 55.6
SEGI_23755 Sequoiadendron giganteum HOM05D006288 ORTHO05D007416 2.1e-13 79.3 87 54.0
CAN.G93.47 Capsicum annuum HOM05D006288 ORTHO05D007416 3.5e-13 78.6 81 60.5
ClCG07G016140 Citrullus lanatus HOM05D006288 ORTHO05D007416 1.3e-12 76.6 80 58.8
CDE10G0042 Ceratophyllum demersum HOM05D006288 ORTHO05D007416 2.3e-12 75.9 88 52.3
Lsat_1_v5_gn_4_174040 Lactuca sativa HOM05D006288 ORTHO05D007416 3.0e-12 75.5 89 53.9
Sed0021882 Sechium edule HOM05D006288 ORTHO05D007416 3.0e-12 75.5 80 60.0
Lsat_1_v5_gn_4_173980 Lactuca sativa HOM05D006288 ORTHO05D007416 1.1e-11 73.6 81 55.6
TAR371G0310 Trochodendron aralioides HOM05D006288 ORTHO05D007416 1.1e-11 73.6 84 53.6
unitig_32.g10759 Utricularia gibba HOM05D006288 ORTHO05D007416 1.1e-11 73.6 90 52.2
Sp2g19860 Schrenkiella parvula HOM05D006288 ORTHO05D007416 1.5e-11 73.2 74 60.8
Atru.BG.156.p Acer truncatum HOM05D006288 ORTHO05D007416 1.9e-11 72.8 76 56.6
A09p04890 Brassica napus HOM05D006288 ORTHO05D007416 1.9e-11 72.8 76 60.5
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 1.9e-11 72.8 76 60.5
Aa31LG7G12050 Aethionema arabicum HOM05D006288 ORTHO05D007416 2.5e-11 72.4 80 57.5
FAN05G5526 Fragaria x ananassa HOM05D006288 ORTHO05D007416 2.5e-11 72.4 70 64.3
BcaC04g23731 Brassica carinata HOM05D006288 ORTHO05D007416 3.3e-11 72.0 74 60.8
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 3.3e-11 72.0 74 60.8
HPP92_018391 Vanilla planifolia HOM05D006288 ORTHO05D007416 3.3e-11 72.0 115 46.1
BcaB04g19620 Brassica carinata HOM05D006288 ORTHO05D007416 5.6e-11 71.2 76 59.2
Thhalv10005135m.g Eutrema salsugineum HOM05D006288 ORTHO05D007416 5.6e-11 71.2 75 60.0
AL8G23340 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 7.4e-11 70.9 73 60.3
AL954U10010 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 7.4e-11 70.9 73 60.3
FAN02G0987 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.6e-10 69.7 71 62.0
FAN09G1057 Fragaria x ananassa HOM05D010582 ORTHO05D007416 1.6e-10 69.7 71 62.0
CARHR287980 Cardamine hirsuta HOM05D006288 ORTHO05D007416 2.8e-10 68.9 75 57.3
AT5G49550 Arabidopsis thaliana HOM05D006288 ORTHO05D007416 4.8e-10 68.2 73 58.9
ECA232G4388 Erigeron canadensis HOM05D006288 ORTHO05D007416 1.8e-09 66.2 77 53.2
Pp3c21_3840 Physcomitrium patens HOM05D006288 ORTHO05D007416 5.3e-09 64.7 80 47.5
FvH4_6g46100 Fragaria vesca HOM05D006288 ORTHO05D007416 1.2e-08 63.5 66 60.6
FvH4_6g24710 Fragaria vesca HOM05D006288 ORTHO05D007416 5.8e-08 61.2 61 62.3
FAN14G4004 Fragaria x ananassa HOM05D006288 ORTHO05D007416 5.8e-08 61.2 61 62.3
HanXRQChr15g0464891 Helianthus annuus HOM05D006288 ORTHO05D007416 2.4e-06 55.8 65 55.4
Mapoly0015s0174 Marchantia polymorpha HOM05D006288 ORTHO05D007416 2.4e-06 55.8 87 37.9


User provided reference genes

Program Settings