Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 2.1e-233 812.0 408 100.0
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 8.3e-190 667.2 408 80.1
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 2.4e-189 665.6 408 79.9
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 4.1e-189 664.8 408 78.4
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 7.0e-189 664.1 408 78.2
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 1.3e-187 659.8 408 77.2
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.3e-187 659.8 408 77.2
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 3.9e-187 658.3 409 80.0
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 8.6e-187 657.1 408 78.7
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 1.9e-186 656.0 410 78.5
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.9e-186 656.0 408 79.2
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 3.3e-186 655.2 409 78.5
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 9.5e-186 653.7 408 77.7
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 1.2e-185 653.3 408 78.9
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 3.6e-185 651.7 408 78.4
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 2.3e-184 649.0 409 77.8
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 2.3e-184 649.0 408 77.0
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 2.3e-184 649.0 408 77.7
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 3.1e-184 648.7 411 76.4
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 4.0e-184 648.3 408 76.2
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 4.4e-183 644.8 408 76.7
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 9.8e-183 643.7 407 78.6
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 9.8e-183 643.7 407 78.6
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.7e-182 642.9 408 77.0
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.7e-182 642.9 398 76.9
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 2.9e-182 642.1 408 76.5
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 4.9e-182 641.3 404 76.0
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 6.4e-182 641.0 408 78.2
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 8.3e-182 640.6 407 78.1
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.1e-181 640.2 398 76.6
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 5.4e-181 637.9 408 76.5
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 9.2e-181 637.1 408 76.0
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 4.6e-180 634.8 408 75.7
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 6.0e-180 634.4 408 76.5
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.0e-179 633.6 408 77.5
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 3.0e-179 632.1 408 76.7
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.5e-178 629.0 408 75.2
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 4.3e-178 628.2 408 76.0
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.6e-177 626.3 408 76.2
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 4.7e-177 624.8 409 74.8
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 6.2e-177 624.4 408 74.0
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.4e-176 623.2 408 74.0
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 1.4e-176 623.2 408 75.7
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 2.3e-176 622.5 408 74.0
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 3.1e-176 622.1 409 74.3
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 5.2e-176 621.3 408 73.8
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 8.9e-176 620.5 408 76.0
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 8.9e-176 620.5 408 73.8
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.5e-175 619.8 409 73.8
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 1.7e-174 616.3 408 75.0
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 6.4e-174 614.4 408 74.0
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.4e-173 613.2 408 74.5
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 3.2e-173 612.1 408 74.0
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 7.1e-173 610.9 408 74.0
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 9.2e-173 610.5 409 75.3
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 2.1e-172 609.4 408 72.8
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 3.5e-172 608.6 408 74.5
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 4.6e-172 608.2 408 73.5
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 6.0e-172 607.8 408 73.5
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 5.1e-171 604.7 407 71.5
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 6.6e-171 604.4 404 73.5
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 1.1e-170 603.6 407 72.5
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 3.3e-170 602.1 407 71.5
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 1.6e-169 599.7 410 71.0
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 1.6e-169 599.7 407 71.0
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 2.1e-169 599.4 408 71.3
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 1.8e-168 596.3 410 71.5
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 2.4e-168 595.9 408 72.3
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 5.2e-168 594.7 408 70.6
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 6.8e-168 594.3 409 70.4
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 8.9e-168 594.0 416 72.4
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 2.0e-167 592.8 409 71.9
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 2.6e-167 592.4 402 72.4
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 7.6e-167 590.9 406 72.2
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 1.3e-166 590.1 439 70.2
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 4.9e-166 588.2 410 71.0
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.1e-165 587.0 409 70.9
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 1.1e-165 587.0 412 71.1
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 1.9e-165 586.3 412 71.4
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 3.2e-165 585.5 408 70.1
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 4.2e-165 585.1 408 70.1
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 5.4e-165 584.7 409 70.9
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 7.1e-165 584.3 412 70.9
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 9.2e-165 583.9 412 70.9
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 9.2e-165 583.9 412 70.9
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 9.2e-165 583.9 412 70.9
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 1.2e-164 583.6 408 70.3
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 1.0e-163 580.5 409 68.9
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 1.3e-163 580.1 412 71.4
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 8.7e-163 577.4 423 69.3
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 8.7e-163 577.4 402 70.4
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 1.9e-162 576.2 412 70.9
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 4.3e-162 575.1 406 70.4
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 5.6e-162 574.7 410 70.0
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 7.3e-162 574.3 406 70.4
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 1.6e-161 573.2 408 69.1
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 2.8e-161 572.4 406 70.4
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 6.2e-161 571.2 360 77.2
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 8.1e-161 570.9 408 70.8
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 2.4e-160 569.3 408 68.9
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 3.1e-160 568.9 406 68.5
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 4.0e-160 568.5 404 70.3
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 6.9e-160 567.8 404 70.0
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 9.9e-159 563.9 409 68.7
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 9.9e-159 563.9 406 68.5
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 1.7e-158 563.1 406 68.5
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 6.0e-156 554.7 358 75.4
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 1.0e-155 553.9 403 67.2
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.5e-154 550.1 409 67.5
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 4.3e-154 548.5 408 67.4
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 1.3e-153 547.0 494 59.1
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 1.6e-153 546.6 408 67.2
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 2.1e-148 529.6 402 65.4
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 7.4e-146 521.2 351 72.4
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 1.8e-144 516.5 405 63.7
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 3.1e-144 515.8 405 63.7
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 4.0e-144 515.4 313 81.5
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.1e-136 490.7 403 60.3
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 6.9e-136 488.0 403 60.5
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.0e-131 474.2 315 75.6
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 1.3e-131 473.8 408 60.5
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 7.4e-130 468.0 416 56.5
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 3.1e-128 462.6 405 57.8
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 1.8e-115 420.2 360 58.6
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 6.7e-115 418.3 292 69.9
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 8.5e-110 401.4 273 70.3
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 3.9e-107 392.5 267 74.2
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 2.6e-106 389.8 313 63.3
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 2.9e-102 376.3 411 50.6
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 5.5e-101 372.1 419 46.5
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.7e-97 360.5 423 53.2
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 1.3e-94 350.9 418 47.1
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 4.1e-88 329.3 411 45.0
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 1.9e-77 293.9 253 60.9
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 6.1e-76 288.9 443 40.0
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 3.9e-70 269.6 161 80.7
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 8.9e-67 258.5 173 75.7
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 1.3e-65 254.6 176 71.6
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 2.2e-65 253.8 176 71.0
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.9e-61 240.7 213 55.4
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 2.4e-56 223.8 173 61.8
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 7.1e-56 222.2 135 78.5
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 2.1e-52 210.7 347 36.3
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.2e-49 200.7 193 54.4
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 1.9e-48 197.6 113 80.5
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 3.2e-48 196.8 148 62.8
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 2.0e-34 151.0 93 77.4
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 3.0e-30 137.1 97 69.1
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 1.2e-26 125.2 100 69.0
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 5.3e-19 99.8 70 65.7
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 2.6e-18 97.4 265 27.2
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 4.2e-16 90.1 84 59.5
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 7.9e-15 85.9 60 73.3


User provided reference genes

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