Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01865 Eucalyptus grandis HOM05D007176 ORTHO05D009050 1.0e-143 513.8 353 100.0
Manes.09G039600 Manihot esculenta HOM05D007176 ORTHO05D009050 4.5e-107 392.1 348 79.6
QL07p025011 Quercus lobata HOM05D007176 ORTHO05D009050 3.8e-106 389.0 348 81.0
Thecc.05G178200 Theobroma cacao HOM05D007176 ORTHO05D009050 1.4e-105 387.1 350 68.6
Duzib106G0399 Durio zibethinus HOM05D007176 ORTHO05D009050 2.4e-105 386.3 350 69.7
Cfa020128 Carpinus fangiana HOM05D007176 ORTHO05D009050 1.2e-104 384.0 349 59.6
RcHm_v2.0_Chr3g0478871 Rosa chinensis HOM05D007176 ORTHO05D009050 4.6e-104 382.1 350 70.0
TAR633G1141 Trochodendron aralioides HOM05D007176 ORTHO05D009050 4.6e-104 382.1 347 81.0
TAR633G0683 Trochodendron aralioides HOM05D007176 ORTHO05D009050 5.1e-103 378.6 347 80.4
Dinv16365 Davidia involucrata HOM05D007176 ORTHO05D009050 6.7e-103 378.3 350 69.7
FAN02G0922 Fragaria x ananassa HOM05D007176 ORTHO05D009050 2.5e-102 376.3 350 76.6
Nn2g15783 Nelumbo nucifera HOM05D007176 ORTHO05D009050 4.3e-102 375.6 350 73.7
FvH4_6g21620 Fragaria vesca HOM05D007176 ORTHO05D009050 7.4e-102 374.8 350 76.3
Hma1.2p1_0645F.1_g194890 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 1.3e-101 374.0 348 79.3
Gohir.A04G053500 Gossypium hirsutum HOM05D007176 ORTHO05D009050 2.1e-101 373.2 353 69.1
CiPaw.09G027300 Carya illinoinensis HOM05D007176 ORTHO05D009050 4.8e-101 372.1 350 79.4
FAN14G2546 Fragaria x ananassa HOM05D007176 ORTHO05D009050 8.2e-101 371.3 350 75.7
Aa31LG10G13110 Aethionema arabicum HOM05D007176 ORTHO05D009050 9.0e-100 367.9 352 69.3
FAN09G2372 Fragaria x ananassa HOM05D007176 ORTHO05D009050 2.6e-99 366.3 350 74.6
Prupe.7G084400 Prunus persica HOM05D007176 ORTHO05D009050 7.6e-99 364.8 350 78.6
Lju124C23T17 Lonicera japonica HOM05D007176 ORTHO05D009050 6.5e-98 361.7 332 81.0
BcaC07g40246 Brassica carinata HOM05D007176 ORTHO05D009050 5.5e-97 358.6 347 69.2
Migut.K00028 Erythranthe guttata HOM05D007176 ORTHO05D009050 3.5e-96 355.9 354 76.0
ECA247G1245 Erigeron canadensis HOM05D007176 ORTHO05D009050 6.0e-96 355.1 348 77.6
Lj5g0009846 Lotus japonicus HOM05D007176 ORTHO05D009050 1.8e-95 353.6 349 75.4
FAN05G5781 Fragaria x ananassa HOM05D007176 ORTHO05D009050 3.0e-95 352.8 356 73.0
A09p51090 Brassica napus HOM05D007176 ORTHO05D009050 1.5e-94 350.5 371 65.0
EL10Ac3g06857 Beta vulgaris HOM05D007176 ORTHO05D009050 4.3e-94 349.0 348 73.9
arahy.Tifrunner.gnm1.ann1.5B5G66 Arachis hypogaea HOM05D007176 ORTHO05D009050 5.7e-94 348.6 357 72.0
THA.LOC104802720 Tarenaya hassleriana HOM05D007176 ORTHO05D009050 9.6e-94 347.8 354 64.4
HanXRQChr10g0300591 Helianthus annuus HOM05D007176 ORTHO05D009050 8.2e-93 344.7 350 76.0
PGR142G3952 Punica granatum HOM05D007176 ORTHO05D009050 2.4e-92 343.2 351 74.6
Potri.006G195800 Populus trichocarpa HOM05D007176 ORTHO05D009050 5.3e-92 342.0 350 75.1
CANSAT64G0938 Cannabis sativa HOM05D007176 ORTHO05D009050 1.7e-90 337.0 351 72.4
arahy.Tifrunner.gnm1.ann1.I5CDLA Arachis hypogaea HOM05D007176 ORTHO05D009050 3.8e-90 335.9 370 68.9
Cpa.g.sc85.35 Carica papaya HOM05D007176 ORTHO05D009050 3.8e-90 335.9 348 74.4
MD12G1053200 Malus domestica HOM05D007176 ORTHO05D009050 1.4e-89 334.0 345 73.9
C08p33910 Brassica napus HOM05D007176 ORTHO05D009050 9.3e-89 331.3 347 65.7
GSVIVG01033441001 Vitis vinifera HOM05D007176 ORTHO05D009050 3.6e-88 329.3 328 71.6
Sc13g0002490 Simmondsia chinensis HOM05D007176 ORTHO05D009050 1.0e-87 327.8 352 64.5
Sabra06G0150500 Salix brachista HOM05D007176 ORTHO05D009050 1.8e-87 327.0 354 72.6
MD14G1051600 Malus domestica HOM05D007176 ORTHO05D009050 5.7e-86 322.0 345 64.3
Rhsim04G0094400 Rhododendron simsii HOM05D007176 ORTHO05D009050 1.3e-85 320.9 349 71.6
CDE04G3485 Ceratophyllum demersum HOM05D007176 ORTHO05D009050 1.4e-84 317.4 353 70.0
AL5G40300 Arabidopsis lyrata HOM05D007176 ORTHO05D009050 3.1e-84 316.2 352 69.6
CSS0044198 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 4.1e-84 315.8 347 71.8
TPR.G19346 Trifolium pratense HOM05D007176 ORTHO05D009050 2.6e-83 313.2 376 68.1
SalBow1G6257 Salvia bowleyana HOM05D007176 ORTHO05D009050 1.0e-82 311.2 361 70.1
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 1.9e-81 307.0 326 52.5
CARHR168930 Cardamine hirsuta HOM05D007176 ORTHO05D009050 2.5e-81 306.6 347 62.2
Thhalv10006065m.g Eutrema salsugineum HOM05D007176 ORTHO05D009050 2.5e-81 306.6 352 69.0
Sp5g04340 Schrenkiella parvula HOM05D007176 ORTHO05D009050 1.4e-79 300.8 352 58.2
Carub.0005s2528 Capsella rubella HOM05D007176 ORTHO05D009050 8.8e-79 298.1 352 68.2
vmacro22113 Vaccinium macrocarpon HOM05D007176 ORTHO05D009050 8.8e-79 298.1 379 46.4
Haze_20048 Corylus avellana HOM05D007176 ORTHO05D009050 2.0e-78 297.0 381 47.8
Haze_20055 Corylus avellana HOM05D007176 ORTHO05D009050 2.0e-78 297.0 381 47.8
Sopen06g001340 Solanum pennellii HOM05D007176 ORTHO05D009050 3.3e-78 296.2 344 64.2
Cc06_g15630 Coffea canephora HOM05D007176 ORTHO05D009050 7.4e-78 295.0 352 69.9
Peaxi162Scf00258g00925 Petunia axillaris HOM05D007176 ORTHO05D009050 7.4e-78 295.0 349 69.3
AT3G58530 Arabidopsis thaliana HOM05D007176 ORTHO05D009050 9.7e-78 294.7 352 66.8
PGSC0003DMG400029168 Solanum tuberosum HOM05D007176 ORTHO05D009050 4.8e-77 292.4 344 70.9
Os02g0281150 Oryza sativa ssp. japonica HOM05D007176 ORTHO05D009050 1.1e-76 291.2 353 64.6
CAN.G111.5 Capsicum annuum HOM05D007176 ORTHO05D009050 4.1e-76 289.3 348 69.5
DCAR_019856 Daucus carota HOM05D007176 ORTHO05D009050 5.9e-75 285.4 339 49.0
Solyc06g005380.3 Solanum lycopersicum HOM05D007176 ORTHO05D009050 7.7e-75 285.0 344 70.1
COL.COLO4_29390 Corchorus olitorius HOM05D007176 ORTHO05D009050 1.3e-74 284.3 328 62.8
Medtr1g054625 Medicago truncatula HOM05D007176 ORTHO05D009050 3.8e-74 282.7 343 68.8
Glyma.09G105500 Glycine max HOM05D007176 ORTHO05D009050 5.0e-74 282.3 351 68.1
Gohir.D04G094700 Gossypium hirsutum HOM05D007176 ORTHO05D009050 1.1e-73 281.2 277 71.8
Actinidia17284 Actinidia chinensis HOM05D007176 ORTHO05D009050 1.9e-73 280.4 350 62.0
Lalb_Chr02g0153821 Lupinus albus HOM05D007176 ORTHO05D009050 1.9e-73 280.4 349 67.3
Hma1.2p1_0645F.1_g194900 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 6.1e-72 275.4 290 78.3
CSS0035640 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 1.0e-71 274.6 347 67.7
Ca_03573_v3 Cicer arietinum L. HOM05D007176 ORTHO05D009050 3.9e-71 272.7 359 65.2
Atru.BG.213.p Acer truncatum HOM05D007176 ORTHO05D009050 5.2e-71 272.3 342 69.6
Gorai.009G392400 Gossypium raimondii HOM05D007176 ORTHO05D009050 2.0e-70 270.4 330 64.2
AUR62032747 Chenopodium quinoa HOM05D007176 ORTHO05D009050 9.7e-70 268.1 326 67.5
BolC8t50987H Brassica oleracea HOM05D000032 ORTHO05D001620 4.1e-68 262.7 277 69.0
Aqoxy279s002 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 5.0e-66 255.8 346 67.6
Aqoxy2G00051 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 5.0e-66 255.8 346 67.6
Ah.13g075580 Amaranthus hybridus HOM05D007176 ORTHO05D009050 1.9e-65 253.8 289 72.0
PSO541G4948 Papaver somniferum HOM05D007176 ORTHO05D009050 1.6e-64 250.8 291 72.5
Zm00001eb237210 Zea mays HOM05D007176 ORTHO05D009050 1.6e-64 250.8 353 63.5
Nitab4.5_0008255g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 6.1e-64 248.8 348 42.8
Lsat_1_v5_gn_9_26900 Lactuca sativa HOM05D007176 ORTHO05D009050 3.3e-62 243.0 352 49.1
HPP92_010126 Vanilla planifolia HOM05D007176 ORTHO05D009050 9.1e-60 235.0 289 70.9
PSO675G7508 Papaver somniferum HOM05D007176 ORTHO05D009050 8.5e-58 228.4 291 63.6
BraA09t40553Z Brassica rapa HOM05D000032 ORTHO05D001620 7.2e-57 225.3 278 62.6
VMungo0720G0788 Vigna mungo HOM05D007176 ORTHO05D009050 2.1e-56 223.8 406 41.4
BcaC02g10014 Brassica carinata HOM05D007176 ORTHO05D009050 2.7e-56 223.4 296 67.9
BolC4t24963H Brassica oleracea HOM05D000032 ORTHO05D001620 7.2e-49 198.7 277 67.9
Pp3c23_2930 Physcomitrium patens HOM05D007176 ORTHO05D009050 1.6e-48 197.6 353 50.4
SEGI_09769 Sequoiadendron giganteum HOM05D007176 ORTHO05D009050 3.6e-48 196.4 289 66.8
C04p33960 Brassica napus HOM05D007176 ORTHO05D009050 1.8e-47 194.1 277 67.5
SMO118G0524 Selaginella moellendorffii HOM05D007176 ORTHO05D009050 2.3e-47 193.7 339 52.5
SGA_v2.0_scaffold274G46490 Striga asiatica HOM05D007176 ORTHO05D009050 4.0e-47 193.0 138 67.4
Ciclev10012430m.g Citrus clementina HOM05D007176 ORTHO05D009050 1.5e-46 191.0 148 64.9
unitig_736.g22301 Utricularia gibba HOM05D007176 ORTHO05D009050 9.8e-46 188.3 394 53.3
Psat6g088000 Pisum sativum HOM05D007176 ORTHO05D009050 4.9e-45 186.0 297 65.3
Nitab4.5_0000009g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 2.0e-43 180.6 416 32.7
Phvul.007G261900 Phaseolus vulgaris HOM05D007176 ORTHO05D009050 2.0e-43 180.6 296 65.9
AagrBONN_evm.TU.Sc2ySwM_228.1251 Anthoceros agrestis HOM05D007176 ORTHO05D009050 5.6e-41 172.6 348 52.0
Atru.chr8.1185 Acer truncatum HOM05D007176 ORTHO05D009050 1.2e-40 171.4 258 70.9
Hund24823 Selenicereus undatus HOM05D007176 ORTHO05D009050 9.8e-38 161.8 115 65.2
arahy.Tifrunner.gnm1.ann1.0S64XP Arachis hypogaea HOM05D007176 ORTHO05D009050 4.1e-36 156.4 276 45.3
HanXRQChr05g0140621 Helianthus annuus HOM05D007176 ORTHO05D009050 1.2e-30 138.3 107 67.3
HanXRQChr10g0316231 Helianthus annuus HOM05D007176 ORTHO05D009050 1.2e-30 138.3 107 67.3
A04p02540 Brassica napus HOM05D000032 ORTHO05D001620 1.1e-28 131.7 293 34.5
Hund24819 Selenicereus undatus HOM05D007176 ORTHO05D001610 6.0e-27 125.9 121 54.5
ATR0001G043 Amborella trichopoda HOM05D007176 ORTHO05D009050 4.3e-25 119.8 87 67.8
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 3.4e-22 110.2 271 29.2
Mapoly0209s0007 Marchantia polymorpha HOM05D007176 ORTHO05D009050 4.9e-21 106.3 125 45.6
AUR62015309 Chenopodium quinoa HOM05D007176 ORTHO05D009050 1.6e-19 101.3 103 51.5


User provided reference genes

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