Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01857 Eucalyptus grandis HOM05D004031 ORTHO05D011186 2.6e-40 168.3 86 100.0
Potri.016G060550 Populus trichocarpa HOM05D004031 ORTHO05D011186 9.4e-19 96.7 55 80.0
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 1.6e-18 95.9 58 79.3
GSVIVG01033459001 Vitis vinifera HOM05D004031 ORTHO05D011186 1.6e-18 95.9 55 83.6
Manes.09G038400 Manihot esculenta HOM05D004031 ORTHO05D011186 3.6e-18 94.7 55 80.0
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 4.7e-18 94.4 55 80.0
Thecc.05G176000 Theobroma cacao HOM05D004031 ORTHO05D011186 1.4e-17 92.8 55 80.0
Prupe.7G082600 Prunus persica HOM05D004031 ORTHO05D011186 2.3e-17 92.0 55 80.0
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 4.0e-17 91.3 59 71.2
MD12G1054200 Malus domestica HOM05D004031 ORTHO05D011186 5.2e-17 90.9 55 78.2
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 6.8e-17 90.5 54 79.6
CDE05G3199 Ceratophyllum demersum HOM05D004031 ORTHO05D011186 6.8e-17 90.5 55 78.2
Medtr7g093770 Medicago truncatula HOM05D004031 ORTHO05D011186 6.8e-17 90.5 53 77.4
MELO3C009606.2 Cucumis melo HOM05D004031 ORTHO05D011186 1.2e-16 89.7 54 77.8
Nn7g35951 Nelumbo nucifera HOM05D004031 ORTHO05D011186 1.2e-16 89.7 53 79.2
A03p37430 Brassica napus HOM05D004031 ORTHO05D011186 1.5e-16 89.4 66 69.7
CSS0013106 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D011186 1.5e-16 89.4 55 74.5
CiPaw.09G027900 Carya illinoinensis HOM05D004031 ORTHO05D011186 1.5e-16 89.4 54 77.8
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 1.5e-16 89.4 54 77.8
Sed0024429 Sechium edule HOM05D004031 ORTHO05D011186 2.0e-16 89.0 54 77.8
Gohir.D01G124600 Gossypium hirsutum HOM05D004031 ORTHO05D011186 2.6e-16 88.6 55 76.4
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 3.4e-16 88.2 53 77.4
Nn7g36859 Nelumbo nucifera HOM05D004031 ORTHO05D011186 4.4e-16 87.8 53 79.2
Glyma.19G150500 Glycine max HOM05D004031 ORTHO05D011186 5.7e-16 87.4 53 81.1
Gohir.A01G137400 Gossypium hirsutum HOM05D004031 ORTHO05D011186 7.5e-16 87.0 55 74.5
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 7.5e-16 87.0 55 76.4
Lj1g0020490 Lotus japonicus HOM05D004031 ORTHO05D011186 1.7e-15 85.9 53 73.6
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 1.7e-15 85.9 78 57.7
Duzib128G0401 Durio zibethinus HOM05D004031 ORTHO05D011186 2.2e-15 85.5 59 69.5
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 2.2e-15 85.5 58 70.7
Migut.J01860 Erythranthe guttata HOM05D004031 ORTHO05D011186 6.3e-15 84.0 54 72.2
Phvul.001G144800 Phaseolus vulgaris HOM05D004031 ORTHO05D011186 6.3e-15 84.0 53 75.5
Hma1.2p1_0124F.1_g058300 Hydrangea macrophylla HOM05D004031 ORTHO05D011186 1.1e-14 83.2 55 74.5
RcHm_v2.0_Chr3g0479131 Rosa chinensis HOM05D004031 ORTHO05D011186 1.4e-14 82.8 55 69.1
Lalb_Chr15g0079141 Lupinus albus HOM05D004031 ORTHO05D011186 1.8e-14 82.4 53 75.5
Aa31LG3G5450 Aethionema arabicum HOM05D004031 ORTHO05D011186 2.4e-14 82.0 60 68.3
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 4.1e-14 81.3 57 71.9
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 9.1e-14 80.1 58 69.0
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 9.1e-14 80.1 58 69.0
Carub.0003s1134 Capsella rubella HOM05D004031 ORTHO05D011186 9.1e-14 80.1 57 71.9
Glyma.03G147100 Glycine max HOM05D004031 ORTHO05D011186 1.2e-13 79.7 50 80.0
Cc06_g15560 Coffea canephora HOM05D004031 ORTHO05D011186 1.6e-13 79.3 56 69.6
Aa31LG3G5490 Aethionema arabicum HOM05D004031 ORTHO05D011186 5.9e-13 77.4 57 66.7
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 7.7e-13 77.0 58 67.2
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 7.7e-13 77.0 53 60.4
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 2.9e-12 75.1 60 66.7
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 1.5e-11 72.8 58 65.5
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 1.5e-11 72.8 58 65.5
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 1.8e-09 65.9 32 96.9
Sed0004834 Sechium edule HOM05D004031 ORTHO05D011186 4.4e-08 61.2 59 57.6
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 1.7e-07 59.3 34 70.6
Mapoly0005s0168 Marchantia polymorpha HOM05D004031 ORTHO05D011186 2.8e-07 58.5 51 47.1
SEGI_01182 Sequoiadendron giganteum HOM05D004031 ORTHO05D011186 8.3e-07 57.0 34 76.5
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.4e-06 56.2 56 53.6
Hund06156 Selenicereus undatus HOM05D000159 ORTHO05D011186 1.4e-06 56.2 32 78.1
SHI31744 Sapria himalayana HOM05D004031 ORTHO05D011186 2.4e-06 55.5 36 63.9


User provided reference genes

Program Settings