Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 1.3e-291 1005.7 538 100.0
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 2.2e-206 722.6 536 68.3
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 1.1e-202 710.3 536 66.6
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 1.6e-201 706.4 530 67.0
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 3.1e-200 702.2 531 66.3
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 1.2e-199 700.3 538 65.8
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 1.5e-199 699.9 534 65.9
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 2.0e-199 699.5 537 66.3
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 4.4e-199 698.4 530 65.8
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 5.8e-199 698.0 537 64.2
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 1.7e-198 696.4 536 65.5
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 8.4e-198 694.1 530 64.9
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 4.2e-197 691.8 536 65.3
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 6.0e-196 688.0 555 62.2
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 2.5e-194 682.6 531 65.2
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 2.5e-194 682.6 530 64.7
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 3.3e-194 682.2 532 64.3
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 3.3e-194 682.2 536 65.9
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 7.3e-194 681.0 531 65.0
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 7.3e-194 681.0 539 64.4
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 3.6e-193 678.7 540 63.3
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 3.6e-193 678.7 540 63.3
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 3.6e-193 678.7 531 64.4
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 1.1e-192 677.2 530 64.0
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 1.1e-192 677.2 534 63.9
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 6.9e-192 674.5 540 63.5
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 3.8e-190 668.7 529 64.1
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 3.2e-189 665.6 530 65.3
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 1.2e-188 663.7 535 64.3
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 2.7e-188 662.5 530 62.6
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 3.0e-187 659.1 527 63.8
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 5.1e-187 658.3 546 61.5
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 3.3e-186 655.6 546 62.5
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 4.3e-186 655.2 533 62.3
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 9.6e-186 654.1 531 62.3
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 2.1e-185 652.9 533 61.5
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 6.2e-185 651.4 559 60.1
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 3.4e-183 645.6 534 60.3
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 5.8e-183 644.8 539 62.9
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 4.9e-182 641.7 536 60.4
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 6.4e-182 641.3 530 63.2
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 3.2e-181 639.0 534 60.5
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 7.1e-181 637.9 530 60.6
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 9.3e-181 637.5 532 62.6
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 3.5e-180 635.6 535 61.3
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 7.9e-180 634.4 535 61.1
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 1.9e-178 629.8 534 59.9
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 3.3e-178 629.0 541 60.4
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 4.3e-178 628.6 528 59.8
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 6.2e-177 624.8 586 58.2
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 8.1e-177 624.4 538 60.4
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 8.1e-177 624.4 541 60.3
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 3.1e-176 622.5 538 59.5
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 4.5e-175 618.6 531 59.7
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 2.9e-174 615.9 534 61.6
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 1.9e-173 613.2 538 58.4
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 3.2e-173 612.5 532 59.6
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 9.3e-173 610.9 538 58.6
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 9.3e-173 610.9 530 59.2
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 9.3e-173 610.9 537 59.4
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 1.2e-172 610.5 588 55.3
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 2.7e-172 609.4 531 58.0
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 7.9e-172 607.8 538 58.6
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 1.1e-170 604.0 536 58.6
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 2.1e-169 599.7 539 57.9
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 3.7e-169 599.0 538 57.4
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 5.3e-168 595.1 531 58.2
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 1.3e-166 590.5 536 58.2
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 1.3e-166 590.5 538 56.3
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 1.4e-165 587.0 538 57.2
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 1.9e-165 586.6 541 56.6
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 2.5e-165 586.3 452 64.6
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 2.7e-164 582.8 593 55.1
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 3.0e-163 579.3 554 57.2
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 1.5e-162 577.0 507 60.6
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 2.5e-162 576.2 539 60.1
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 1.6e-161 573.5 506 58.7
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 3.7e-161 572.4 539 59.6
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 9.0e-160 567.8 559 56.2
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 1.5e-159 567.0 539 58.4
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 2.0e-159 566.6 532 54.7
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 5.9e-159 565.1 537 54.9
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 1.0e-158 564.3 448 64.1
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 2.7e-156 556.2 532 54.1
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 6.1e-156 555.1 540 55.0
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 2.4e-152 543.1 539 57.7
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 1.6e-148 530.4 437 61.3
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 2.1e-140 503.4 530 52.1
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.7e-134 483.8 404 60.4
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 3.8e-134 482.6 530 50.8
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 1.1e-133 481.1 575 48.9
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 3.4e-130 469.5 395 59.0
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 5.4e-128 462.2 388 60.1
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 2.5e-125 453.4 547 46.8
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 6.8e-123 445.3 535 45.4
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 2.6e-122 443.4 544 46.0
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 2.4e-112 410.2 352 58.5
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 4.1e-112 409.5 497 46.9
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 1.2e-111 407.9 352 58.2
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 1.6e-111 407.5 288 68.4
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 6.8e-99 365.5 563 38.9
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 2.6e-98 363.6 288 63.2
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.5e-90 337.8 461 42.7
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 6.0e-87 325.9 557 37.7
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 2.2e-81 307.4 297 56.2
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 9.3e-72 275.4 205 67.8
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 9.6e-69 265.4 390 41.5
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 8.1e-68 262.3 582 33.7
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 1.1e-59 235.3 572 31.5
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 9.0e-59 232.3 212 56.1
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 5.7e-53 213.0 150 66.7
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 7.4e-53 212.6 165 64.8
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 7.6e-50 202.6 531 29.8
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 3.5e-47 193.7 169 56.8
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 9.7e-45 185.7 135 67.4
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.8e-43 181.4 130 66.9
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 2.7e-39 167.5 141 59.6
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 1.0e-33 149.1 118 61.0
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 3.6e-31 140.6 113 63.7
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.3e-28 132.1 99 66.7
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 1.4e-27 128.6 100 62.0
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 2.5e-24 117.9 85 67.1
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 1.4e-22 112.1 102 54.9
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 4.2e-16 90.5 454 24.7
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 9.4e-16 89.4 88 53.4
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 1.2e-15 89.0 71 62.0
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 3.0e-14 84.3 87 51.7
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 3.0e-14 84.3 87 51.7
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 5.4e-11 73.6 108 38.9
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 1.6e-10 72.0 68 55.9
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 1.7e-09 68.6 114 40.4
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 4.2e-08 63.9 114 37.7
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 1.2e-07 62.4 74 43.2
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.8e-06 58.5 294 25.5
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 3.0e-06 57.8 46 58.7


User provided reference genes

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