Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01704 Eucalyptus grandis HOM05D006876 ORTHO05D008708 6.9e-128 460.7 238 100.0
PGR142G2444 Punica granatum HOM05D006876 ORTHO05D008708 1.5e-82 310.1 240 69.6
MELO3C019167.2 Cucumis melo HOM05D006876 ORTHO05D008708 7.7e-71 271.2 244 60.2
ClCG04G005040 Citrullus lanatus HOM05D006876 ORTHO05D008708 1.3e-70 270.4 246 60.2
CsaV3_4G029000 Cucumis sativus L. HOM05D006876 ORTHO05D008708 3.8e-70 268.9 244 60.2
Manes.09G001600 Manihot esculenta HOM05D006876 ORTHO05D008708 2.5e-69 266.2 244 58.2
Sed0006068 Sechium edule HOM05D006876 ORTHO05D008708 1.6e-68 263.5 244 57.0
Potri.006G026300 Populus trichocarpa HOM05D006876 ORTHO05D008708 2.1e-68 263.1 241 60.2
RcHm_v2.0_Chr7g0183121 Rosa chinensis HOM05D006876 ORTHO05D008708 2.8e-68 262.7 246 59.8
Dinv13650 Davidia involucrata HOM05D006876 ORTHO05D008708 8.0e-68 261.2 243 59.7
Hund24486 Selenicereus undatus HOM05D006876 ORTHO05D008708 1.4e-67 260.4 199 63.8
Cpa.g.sc33.174 Carica papaya HOM05D006876 ORTHO05D008708 1.8e-67 260.0 244 57.8
Sabra06G0019500 Salix brachista HOM05D006876 ORTHO05D008708 3.0e-67 259.2 240 58.3
FAN19G1913 Fragaria x ananassa HOM05D006876 ORTHO05D008708 8.9e-67 257.7 241 59.8
Prupe.7G023500 Prunus persica HOM05D006876 ORTHO05D008708 3.4e-66 255.8 249 57.4
Ah.13g077470 Amaranthus hybridus HOM05D006876 ORTHO05D008708 4.4e-66 255.4 239 57.3
GSVIVG01025828001 Vitis vinifera HOM05D006876 ORTHO05D008708 5.7e-66 255.0 238 58.4
QL07p015416 Quercus lobata HOM05D006876 ORTHO05D008708 7.5e-66 254.6 244 56.1
FAN28G2491 Fragaria x ananassa HOM05D006876 ORTHO05D008708 1.3e-65 253.8 241 58.5
MD12G1111100 Malus domestica HOM05D006876 ORTHO05D008708 1.3e-65 253.8 243 57.6
CiPaw.09G161500 Carya illinoinensis HOM05D006876 ORTHO05D008708 1.7e-65 253.4 205 63.9
Cfa019902 Carpinus fangiana HOM05D006876 ORTHO05D008708 3.7e-65 252.3 201 62.7
EL10Ac3g07376 Beta vulgaris HOM05D006876 ORTHO05D008708 4.9e-65 251.9 241 54.8
Nitab4.5_0002131g0070 Nicotiana tabacum HOM05D006876 ORTHO05D008708 1.8e-64 250.0 248 54.8
Peaxi162Scf00003g05358 Petunia axillaris HOM05D006876 ORTHO05D008708 3.1e-64 249.2 243 55.6
Sc19g0007790 Simmondsia chinensis HOM05D006876 ORTHO05D008708 3.1e-64 249.2 203 64.5
Nitab4.5_0000123g0090 Nicotiana tabacum HOM05D006876 ORTHO05D008708 9.2e-64 247.7 241 54.4
Gohir.A13G086570 Gossypium hirsutum HOM05D006876 ORTHO05D008708 2.0e-63 246.5 241 54.4
Gohir.D13G092600 Gossypium hirsutum HOM05D006876 ORTHO05D008708 2.7e-63 246.1 242 54.1
Ciclev10012641m.g Citrus clementina HOM05D006876 ORTHO05D008708 7.8e-63 244.6 241 54.4
AT3G56820 Arabidopsis thaliana HOM05D006876 ORTHO05D008708 1.3e-62 243.8 209 62.2
Sopen10g028620 Solanum pennellii HOM05D006876 ORTHO05D008708 2.3e-62 243.0 245 54.7
TWI53G1364 Tripterygium wilfordii HOM05D006876 ORTHO05D008708 2.9e-62 242.7 245 55.9
Atru.chr8.919 Acer truncatum HOM05D006876 ORTHO05D008708 3.8e-62 242.3 243 54.7
Aa31LG10G11670 Aethionema arabicum HOM05D006876 ORTHO05D008708 3.8e-62 242.3 203 61.6
THA.LOC104803253 Tarenaya hassleriana HOM05D006876 ORTHO05D008708 3.8e-62 242.3 210 61.0
Solyc10g076930.2 Solanum lycopersicum HOM05D006876 ORTHO05D008708 5.0e-62 241.9 245 54.7
AL5G38200 Arabidopsis lyrata HOM05D006876 ORTHO05D008708 6.6e-62 241.5 207 61.8
Thecc.05G117700 Theobroma cacao HOM05D006876 ORTHO05D008708 8.6e-62 241.1 242 53.7
MSTRG.10760 Avicennia marina HOM05D006876 ORTHO05D008708 1.1e-61 240.7 245 55.9
COL.COLO4_21445 Corchorus olitorius HOM05D006876 ORTHO05D008708 1.1e-61 240.7 241 53.5
Carub.0005s2355 Capsella rubella HOM05D006876 ORTHO05D008708 1.9e-61 240.0 208 60.6
SGA_v2.0_scaffold123G33492 Striga asiatica HOM05D001269 ORTHO05D001083 3.3e-61 239.2 245 55.5
MBI19_g10813_MAGBIO Magnolia biondii HOM05D006876 ORTHO05D008708 4.3e-61 238.8 203 59.1
CSS0024544 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 5.6e-61 238.4 245 55.5
AUR62020968 Chenopodium quinoa HOM05D006876 ORTHO05D008708 7.3e-61 238.0 201 59.2
Gorai.010G139600 Gossypium raimondii HOM05D006876 ORTHO05D008708 7.3e-61 238.0 249 52.6
arahy.Tifrunner.gnm1.ann1.SXUX32 Arachis hypogaea HOM05D006876 ORTHO05D008708 1.2e-60 237.3 244 54.9
PGSC0003DMG400007191 Solanum tuberosum HOM05D006876 ORTHO05D008708 1.2e-60 237.3 243 55.1
PSO339G4949 Papaver somniferum HOM05D006876 ORTHO05D008708 2.8e-60 236.1 247 53.8
Cc06_g21190 Coffea canephora HOM05D006876 ORTHO05D008708 3.6e-60 235.7 198 61.6
arahy.Tifrunner.gnm1.ann1.U8TZLL Arachis hypogaea HOM05D006876 ORTHO05D008708 4.7e-60 235.3 244 54.5
CARHR166970 Cardamine hirsuta HOM05D006876 ORTHO05D008708 4.7e-60 235.3 223 59.2
SalBow1G4764 Salvia bowleyana HOM05D006876 ORTHO05D008708 4.7e-60 235.3 246 55.3
PSO384G4569 Papaver somniferum HOM05D006876 ORTHO05D008708 6.1e-60 235.0 204 60.3
BolC8t50823H Brassica oleracea HOM05D006876 ORTHO05D008708 8.0e-60 234.6 202 59.4
RhsimUnG0021300 Rhododendron simsii HOM05D006876 ORTHO05D008708 1.0e-59 234.2 254 54.7
BcaC07g40117 Brassica carinata HOM05D006876 ORTHO05D008708 1.4e-59 233.8 204 59.8
C08p32050 Brassica napus HOM05D006876 ORTHO05D008708 2.3e-59 233.0 222 56.3
Sp5g05770 Schrenkiella parvula HOM05D006876 ORTHO05D008708 3.1e-59 232.6 208 59.6
Lj1g0024709 Lotus japonicus HOM05D006876 ORTHO05D008708 6.8e-59 231.5 204 59.3
BcaC07g39992 Brassica carinata HOM05D006876 ORTHO05D008708 8.9e-59 231.1 222 55.9
BraA09t40417Z Brassica rapa HOM05D006876 ORTHO05D008708 8.9e-59 231.1 209 56.9
Lalb_Chr24g0400801 Lupinus albus HOM05D006876 ORTHO05D008708 1.2e-58 230.7 202 56.4
CANSAT78G2074 Cannabis sativa HOM05D006876 ORTHO05D008708 3.4e-58 229.2 243 53.1
Thhalv10006232m.g Eutrema salsugineum HOM05D006876 ORTHO05D008708 3.4e-58 229.2 207 58.9
Migut.K00190 Erythranthe guttata HOM05D006876 ORTHO05D008708 5.8e-58 228.4 198 60.6
Os01g0810200 Oryza sativa ssp. japonica HOM05D006876 ORTHO05D008708 5.8e-58 228.4 243 52.7
Duzib114G0933 Durio zibethinus HOM05D006876 ORTHO05D008708 9.8e-58 227.6 242 52.1
Hund24492 Selenicereus undatus HOM05D006876 ORTHO05D008708 1.7e-57 226.9 201 57.7
A09p49640 Brassica napus HOM05D006876 ORTHO05D008708 4.9e-57 225.3 244 52.5
Hma1.2p1_0694F.1_g204340 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 8.3e-57 224.6 258 50.4
Haze_20349 Corylus avellana HOM05D006876 ORTHO05D008708 2.4e-56 223.0 234 51.7
Lsat_1_v5_gn_6_24200 Lactuca sativa HOM05D006876 ORTHO05D008708 3.2e-56 222.6 246 50.0
Aqoxy1G01501 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 9.2e-56 221.1 235 53.2
Medtr7g088040 Medicago truncatula HOM05D006876 ORTHO05D008708 2.0e-55 219.9 241 50.6
vmacro07595 Vaccinium macrocarpon HOM05D006876 ORTHO05D008708 3.5e-55 219.2 271 48.7
unitig_899.g15477 Utricularia gibba HOM05D006876 ORTHO05D008708 1.3e-54 217.2 245 51.0
Migut.K00192 Erythranthe guttata HOM05D006876 ORTHO05D008708 5.0e-54 215.3 193 59.1
Glyma.03G003700 Glycine max HOM05D006876 ORTHO05D008708 5.0e-54 215.3 194 57.2
Zm00001eb150270 Zea mays HOM05D006876 ORTHO05D008708 6.6e-54 214.9 245 51.4
Phvul.001G101300 Phaseolus vulgaris HOM05D006876 ORTHO05D008708 8.6e-54 214.5 194 57.7
Glyma.19G122400 Glycine max HOM05D006876 ORTHO05D008708 1.2e-52 210.7 238 49.6
TAR623G1567 Trochodendron aralioides HOM05D006876 ORTHO05D008708 1.2e-52 210.7 151 64.9
VMungo1383G0045 Vigna mungo HOM05D006876 ORTHO05D008708 8.0e-52 208.0 194 56.7
Nn7g37203 Nelumbo nucifera HOM05D006876 ORTHO05D008708 5.2e-51 205.3 213 54.5
arahy.Tifrunner.gnm1.ann1.R6YTNA Arachis hypogaea HOM05D006876 ORTHO05D008708 6.4e-49 198.4 199 50.3
Psat3g083640 Pisum sativum HOM05D006876 ORTHO05D008708 7.0e-48 194.9 137 65.0
Aqoxy1G01505 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 1.6e-47 193.7 129 68.2
ATR1096G134 Amborella trichopoda HOM05D006876 ORTHO05D008708 5.2e-43 178.7 249 43.0
Lj4A828G46 Lonicera japonica HOM05D006876 ORTHO05D008708 4.4e-42 175.6 111 71.2
Hma1.2p1_0694F.1_g204350 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 1.9e-40 170.2 109 69.7
DCAR_020618 Daucus carota HOM05D006876 ORTHO05D008708 2.4e-40 169.9 114 70.2
SEGI_40976 Sequoiadendron giganteum HOM05D006876 ORTHO05D008708 3.5e-39 166.0 131 57.3
Oeu032953.2 Olea europaea HOM05D006876 ORTHO05D008708 1.3e-38 164.1 222 43.7
CSS0021314 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 5.1e-38 162.2 110 69.1
FvH4_1g29600 Fragaria vesca HOM05D006876 ORTHO05D008708 1.5e-37 160.6 174 55.7
ECA233G0065 Erigeron canadensis HOM05D000444 ORTHO05D000489 3.6e-36 156.0 109 63.3
QL05p001451 Quercus lobata HOM05D006876 ORTHO05D008708 1.3e-33 147.5 95 70.5
Lalb_Chr02g0157641 Lupinus albus HOM05D006876 ORTHO05D008708 2.5e-29 133.3 148 51.4
Actinidia37859 Actinidia chinensis HOM05D006876 ORTHO05D008708 1.6e-28 130.6 88 68.2
arahy.Tifrunner.gnm1.ann1.S4H51W Arachis hypogaea HOM05D006876 ORTHO05D008708 2.9e-25 119.8 134 47.0
QL05p001731 Quercus lobata HOM05D006876 ORTHO05D008708 1.9e-21 107.1 68 69.1
QL05p085390 Quercus lobata HOM05D006876 ORTHO05D008708 1.9e-21 107.1 68 69.1
CBR_g17867 Chara braunii HOM05D006876 ORTHO05D008708 3.3e-21 106.3 131 38.9
arahy.Tifrunner.gnm1.ann1.8Z6XIB Arachis hypogaea HOM05D006876 ORTHO05D008708 2.1e-20 103.6 76 63.2
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 3.6e-20 102.8 77 62.3
Ca_08331_v3 Cicer arietinum L. HOM05D006876 ORTHO05D008708 5.8e-18 95.5 68 64.7
Oeu007164.1 Olea europaea HOM05D006876 ORTHO05D008708 1.3e-17 94.4 70 62.9
arahy.Tifrunner.gnm1.ann1.ERVJ4V Arachis hypogaea HOM05D006876 ORTHO05D008708 3.2e-16 89.7 182 33.0
DCAR_020619 Daucus carota HOM05D006876 ORTHO05D008708 4.2e-16 89.4 146 43.8
MCO02G060 Micromonas commoda HOM05D006876 ORTHO05D008708 1.0e-14 84.7 180 33.3
Glyma.10G143650 Glycine max HOM05D006876 ORTHO05D008708 1.4e-11 74.3 52 65.4
Oeu039192.1 Olea europaea HOM05D006876 ORTHO05D008708 1.5e-10 70.9 136 41.2
HPP92_016900 Vanilla planifolia HOM05D006876 ORTHO05D008708 2.2e-09 67.0 95 43.2
arahy.Tifrunner.gnm1.ann1.Q5BN79 Arachis hypogaea HOM05D006876 ORTHO05D008708 8.4e-09 65.1 58 56.9
BolC6t37548H Brassica oleracea HOM05D006876 ORTHO05D040197 1.8e-06 57.4 75 42.7
C06p23790 Brassica napus HOM05D006876 ORTHO05D040197 3.0e-06 56.6 75 41.3


User provided reference genes

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