Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01615 Eucalyptus grandis HOM05D008152 ORTHO05D010231 2.7e-76 288.5 138 100.0
Migut.K00109 Erythranthe guttata HOM05D008152 ORTHO05D010231 3.9e-14 82.0 54 66.7
Nn7g36510 Nelumbo nucifera HOM05D008152 ORTHO05D010231 3.9e-14 82.0 63 68.3
Nn2g14938 Nelumbo nucifera HOM05D008152 ORTHO05D010231 8.6e-14 80.9 63 63.5
Medtr7g090035 Medicago truncatula HOM05D008152 ORTHO05D010231 1.1e-13 80.5 63 61.9
PGR031G3912 Punica granatum HOM05D008152 ORTHO05D010231 1.5e-13 80.1 93 47.3
CiPaw.09G044200 Carya illinoinensis HOM05D008152 ORTHO05D010231 2.5e-13 79.3 62 62.9
Glyma.03G128700 Glycine max HOM05D008152 ORTHO05D010231 4.3e-13 78.6 63 63.5
Lalb_Chr14g0365951 Lupinus albus HOM05D008152 ORTHO05D010231 4.3e-13 78.6 63 63.5
GSVIVG01033573001 Vitis vinifera HOM05D008152 ORTHO05D010231 5.6e-13 78.2 62 62.9
Ciclev10006402m.g Citrus clementina HOM05D008152 ORTHO05D010231 9.5e-13 77.4 59 64.4
COL.COLO4_33936 Corchorus olitorius HOM05D008152 ORTHO05D010231 2.8e-12 75.9 62 61.3
RcHm_v2.0_Chr2g0124931 Rosa chinensis HOM05D008152 ORTHO05D010231 6.2e-12 74.7 55 72.7
Nitab4.5_0010323g0030 Nicotiana tabacum HOM05D008152 ORTHO05D010231 8.1e-12 74.3 62 56.5
FvH4_6g25100 Fragaria vesca HOM05D008152 ORTHO05D010231 1.1e-11 73.9 82 51.2
Duzib128G1278 Durio zibethinus HOM05D008152 ORTHO05D010231 1.4e-11 73.6 79 53.2
Glyma.19G131100 Glycine max HOM05D008152 ORTHO05D010231 1.4e-11 73.6 63 60.3
CSS0018961 Camellia sinensis var. sinensis HOM05D008152 ORTHO05D010231 1.8e-11 73.2 62 56.5
Prupe.7G046400 Prunus persica HOM05D008152 ORTHO05D010231 1.8e-11 73.2 64 60.9
Gohir.D09G115470 Gossypium hirsutum HOM05D008152 ORTHO05D010231 2.3e-11 72.8 63 60.3
Oeu013028.1 Olea europaea HOM05D008152 ORTHO05D010231 2.3e-11 72.8 56 60.7
Potri.006G043300 Populus trichocarpa HOM05D008152 ORTHO05D010231 2.3e-11 72.8 64 59.4
Lj1g0004562 Lotus japonicus HOM05D008152 ORTHO05D010231 4.0e-11 72.0 63 61.9
FAN05G4131 Fragaria x ananassa HOM05D008152 ORTHO05D010231 6.8e-11 71.2 55 69.1
Gorai.006G133500 Gossypium raimondii HOM05D008152 ORTHO05D010231 6.8e-11 71.2 63 60.3
THA.LOC104816407 Tarenaya hassleriana HOM05D008152 ORTHO05D010231 1.2e-10 70.5 63 58.7
Manes.08G056600 Manihot esculenta HOM05D008152 ORTHO05D010231 1.5e-10 70.1 62 59.7
CAN.G1237.35 Capsicum annuum HOM05D008152 ORTHO05D010231 2.6e-10 69.3 57 56.1
SalBow6G4146 Salvia bowleyana HOM05D008152 ORTHO05D010231 5.8e-10 68.2 54 63.0
Psat3g078320 Pisum sativum HOM05D008152 ORTHO05D010231 7.5e-10 67.8 50 64.0
Phvul.001G124150 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 9.8e-10 67.4 62 58.1
Phvul.001G124600 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 9.8e-10 67.4 62 58.1
MD00G1073900 Malus domestica HOM05D008152 ORTHO05D010231 1.7e-09 66.6 64 56.2
MD12G1091200 Malus domestica HOM05D008152 ORTHO05D010231 1.7e-09 66.6 64 56.2
Sc13g0001370 Simmondsia chinensis HOM05D008152 ORTHO05D010231 1.7e-09 66.6 53 58.5
Solyc10g084060.2 Solanum lycopersicum HOM05D008152 ORTHO05D010231 4.9e-09 65.1 54 57.4
FAN09G1661 Fragaria x ananassa HOM05D008152 ORTHO05D010231 1.1e-08 63.9 50 68.0
Thhalv10015225m.g Eutrema salsugineum HOM05D008152 ORTHO05D010231 9.2e-08 60.8 62 51.6
C09p72760 Brassica napus HOM05D008152 ORTHO05D010231 2.7e-07 59.3 61 54.1
CARHR209180 Cardamine hirsuta HOM05D008152 ORTHO05D010231 3.5e-07 58.9 58 55.2
Hund19113 Selenicereus undatus HOM05D008152 ORTHO05D010231 4.6e-07 58.5 74 43.2
A03p01520 Brassica napus HOM05D008152 ORTHO05D010231 7.8e-07 57.8 56 55.4
BraA03t09529Z Brassica rapa HOM05D008152 ORTHO05D010231 7.8e-07 57.8 56 55.4
AL6G13710 Arabidopsis lyrata HOM05D008152 ORTHO05D010231 1.3e-06 57.0 58 51.7
A10p32040 Brassica napus HOM05D008152 ORTHO05D010231 1.7e-06 56.6 55 56.4
BolC9t60014H Brassica oleracea HOM05D008152 ORTHO05D010231 1.7e-06 56.6 55 56.4
BraA10t45248Z Brassica rapa HOM05D008152 ORTHO05D010231 1.7e-06 56.6 55 56.4
C03p01870 Brassica napus HOM05D008152 ORTHO05D010231 3.0e-06 55.8 62 51.6
BcaC06g32113 Brassica carinata HOM05D008152 ORTHO05D010231 3.9e-06 55.5 56 53.6
arahy.Tifrunner.gnm1.ann1.46R54Y Arachis hypogaea HOM05D008152 ORTHO05D010231 5.1e-06 55.1 67 47.8
BcaB01g05765 Brassica carinata HOM05D008152 ORTHO05D010231 5.1e-06 55.1 61 50.8
Carub.0006s0304 Capsella rubella HOM05D008152 ORTHO05D010231 6.6e-06 54.7 29 79.3
Gohir.A10G182400 Gossypium hirsutum HOM05D018277 ORTHO05D020787 6.6e-06 54.7 38 57.9
Gohir.D10G189100 Gossypium hirsutum HOM05D018277 ORTHO05D020787 6.6e-06 54.7 38 57.9
Gorai.011G212400 Gossypium raimondii HOM05D018277 ORTHO05D020787 6.6e-06 54.7 38 57.9
Thecc.10G170800 Theobroma cacao HOM05D018277 ORTHO05D020787 8.6e-06 54.3 33 60.6


User provided reference genes

Program Settings