Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 1.5e-79 299.7 174 100.0
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 3.3e-39 165.6 174 62.1
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 7.5e-39 164.5 170 62.9
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 1.3e-38 163.7 174 64.4
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 1.3e-38 163.7 153 68.6
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 2.2e-38 162.9 146 70.5
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 8.2e-38 161.0 158 67.1
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 1.8e-37 159.8 163 64.4
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 2.4e-37 159.5 164 64.0
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 4.1e-37 158.7 96 79.2
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 1.2e-36 157.1 166 64.5
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 2.7e-36 156.0 167 57.5
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 2.5e-34 149.4 110 76.4
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 3.2e-34 149.1 165 61.8
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 9.4e-34 147.5 143 56.6
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 9.4e-34 147.5 122 77.9
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.6e-33 146.7 137 58.4
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 2.1e-33 146.4 90 75.6
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 2.1e-33 146.4 135 63.0
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 2.7e-33 146.0 110 80.0
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 2.7e-33 146.0 151 64.2
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 3.6e-33 145.6 142 56.3
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 3.6e-33 145.6 142 56.3
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 3.6e-33 145.6 169 60.4
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 4.7e-33 145.2 151 55.0
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 4.7e-33 145.2 168 60.7
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 1.0e-32 144.1 175 54.9
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 1.0e-32 144.1 147 55.1
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 1.0e-32 144.1 161 60.2
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 1.4e-32 143.7 145 55.2
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 1.4e-32 143.7 143 56.6
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 1.8e-32 143.3 109 67.9
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 3.0e-32 142.5 168 61.9
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 3.0e-32 142.5 119 65.5
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 3.0e-32 142.5 167 58.7
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 4.0e-32 142.1 127 70.1
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 5.2e-32 141.7 135 55.6
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 5.2e-32 141.7 173 59.0
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 6.8e-32 141.4 85 78.8
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 6.8e-32 141.4 174 58.6
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 1.2e-31 140.6 174 58.0
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 2.0e-31 139.8 83 79.5
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 2.0e-31 139.8 112 63.4
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 2.6e-31 139.4 171 58.5
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 5.7e-31 138.3 111 75.7
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 5.7e-31 138.3 171 54.4
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 7.5e-31 137.9 145 54.5
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 9.8e-31 137.5 149 55.0
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 1.3e-30 137.1 144 55.6
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 1.3e-30 137.1 171 56.7
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 1.7e-30 136.7 141 54.6
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 1.7e-30 136.7 119 63.9
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 2.8e-30 136.0 85 76.5
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 3.7e-30 135.6 118 71.2
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.1e-29 134.0 122 58.2
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.4e-29 133.7 139 54.0
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 1.4e-29 133.7 102 72.5
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.8e-29 133.3 78 79.5
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 2.4e-29 132.9 99 83.8
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 2.4e-29 132.9 119 58.0
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 3.1e-29 132.5 139 59.0
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 4.1e-29 132.1 110 70.9
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 4.1e-29 132.1 93 69.9
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 5.4e-29 131.7 101 72.3
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 5.4e-29 131.7 95 68.4
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 5.4e-29 131.7 146 54.8
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 5.4e-29 131.7 116 62.1
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 9.1e-29 131.0 108 62.0
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.2e-28 130.6 146 54.8
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 1.2e-28 130.6 145 51.0
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.6e-28 130.2 83 73.5
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 2.7e-28 129.4 112 74.1
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 2.7e-28 129.4 136 52.2
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 2.7e-28 129.4 108 61.1
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 3.5e-28 129.0 112 72.3
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 4.5e-28 128.6 107 71.0
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 4.5e-28 128.6 105 62.9
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 5.9e-28 128.3 135 53.3
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 5.9e-28 128.3 94 66.0
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 7.7e-28 127.9 112 73.2
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 1.0e-27 127.5 83 73.5
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 1.0e-27 127.5 75 80.0
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 1.7e-27 126.7 114 69.3
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 2.9e-27 125.9 121 68.6
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 2.9e-27 125.9 93 65.6
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 3.8e-27 125.6 101 79.2
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 3.8e-27 125.6 112 66.1
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 5.0e-27 125.2 112 72.3
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 6.5e-27 124.8 97 66.0
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 6.5e-27 124.8 100 62.0
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 8.6e-27 124.4 116 55.2
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 1.9e-26 123.2 112 71.4
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 1.9e-26 123.2 112 71.4
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 1.9e-26 123.2 112 71.4
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 1.9e-26 123.2 112 71.4
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 2.5e-26 122.9 80 72.5
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 3.3e-26 122.5 128 64.1
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 4.2e-26 122.1 100 59.0
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 5.5e-26 121.7 108 54.6
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 7.2e-26 121.3 80 72.5
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 9.5e-26 120.9 71 78.9
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 2.1e-25 119.8 152 50.7
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 3.6e-25 119.0 140 50.7
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 1.0e-24 117.5 73 71.2
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 6.8e-24 114.8 141 46.1
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 8.9e-24 114.4 91 61.5
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 1.2e-23 114.0 92 58.7
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 2.6e-23 112.8 104 53.8
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 2.6e-23 112.8 109 62.4
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 3.4e-23 112.5 175 50.9
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 4.4e-23 112.1 93 60.2
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 5.7e-23 111.7 109 61.5
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 9.8e-23 110.9 77 72.7
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 2.2e-22 109.8 111 52.3
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 3.1e-21 105.9 141 48.2
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 5.9e-20 101.7 119 47.9
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 7.8e-20 101.3 75 65.3
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 1.0e-19 100.9 113 51.3
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 1.7e-19 100.1 94 54.3
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 5.0e-19 98.6 95 54.7
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 8.6e-19 97.8 60 73.3
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 9.5e-18 94.4 71 66.2
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 9.5e-18 94.4 56 76.8
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 2.2e-14 83.2 75 57.3
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 4.9e-14 82.0 59 57.6
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 4.9e-14 82.0 59 57.6
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 1.1e-13 80.9 82 54.9
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 1.1e-13 80.9 82 54.9
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.1e-13 80.9 59 55.9
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 2.4e-13 79.7 110 50.9
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 9.2e-13 77.8 79 54.4
Nn6g32378 Nelumbo nucifera HOM05D005516 ORTHO05D006713 1.8e-08 63.5 59 55.9
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 4.0e-08 62.4 44 59.1
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 8.3e-06 54.7 45 53.3


User provided reference genes

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