Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 7.7e-143 510.4 241 100.0
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 4.1e-104 381.7 241 77.6
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 5.4e-104 381.3 241 78.0
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 1.6e-103 379.8 241 77.2
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 2.7e-103 379.0 241 77.6
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 4.6e-103 378.3 242 76.9
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 7.8e-103 377.5 241 77.2
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 3.0e-102 375.6 245 76.7
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 1.1e-101 373.6 241 76.3
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 1.9e-101 372.9 241 75.9
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 2.5e-101 372.5 242 77.3
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 3.3e-101 372.1 241 76.8
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 3.3e-101 372.1 241 75.9
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 3.3e-101 372.1 241 75.9
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 4.3e-101 371.7 241 75.5
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 5.6e-101 371.3 242 76.9
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 7.3e-101 370.9 241 75.1
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 7.3e-101 370.9 242 76.4
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 7.3e-101 370.9 241 75.1
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 1.2e-100 370.2 241 75.9
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 1.2e-100 370.2 241 75.1
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 1.6e-100 369.8 241 75.9
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 2.1e-100 369.4 242 76.4
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 2.1e-100 369.4 241 75.1
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 2.8e-100 369.0 240 75.8
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 2.8e-100 369.0 240 75.8
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 4.7e-100 368.2 241 74.7
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 6.2e-100 367.9 241 75.1
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 8.0e-100 367.5 241 75.1
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 1.4e-99 366.7 241 75.1
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 6.8e-99 364.4 241 74.3
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 1.2e-98 363.6 241 74.3
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 1.2e-98 363.6 241 75.1
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 1.5e-98 363.2 243 74.1
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 2.0e-98 362.8 244 73.0
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 2.6e-98 362.5 243 74.1
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 2.6e-98 362.5 243 75.3
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 3.4e-98 362.1 243 74.1
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 7.5e-98 360.9 238 73.9
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 9.8e-98 360.5 241 74.3
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 9.8e-98 360.5 241 74.3
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 1.3e-97 360.1 242 74.8
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 1.7e-97 359.8 243 74.9
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 2.2e-97 359.4 241 73.4
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 2.2e-97 359.4 236 74.6
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 2.9e-97 359.0 242 72.7
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 4.9e-97 358.2 263 69.2
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 6.4e-97 357.8 241 73.0
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 1.1e-96 357.1 242 73.6
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 1.9e-96 356.3 241 73.0
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 3.2e-96 355.5 242 74.0
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 3.2e-96 355.5 242 74.0
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 4.1e-96 355.1 242 74.0
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 5.4e-96 354.8 243 72.8
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 5.4e-96 354.8 257 70.0
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 9.2e-96 354.0 241 72.6
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 9.2e-96 354.0 242 73.6
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 9.2e-96 354.0 242 74.0
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 6.0e-95 351.3 251 70.9
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 2.3e-94 349.4 241 69.7
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 6.6e-94 347.8 241 71.0
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 1.9e-93 346.3 241 71.8
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 9.5e-93 344.0 242 70.7
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 9.5e-93 344.0 242 70.7
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 1.6e-92 343.2 242 71.5
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 1.6e-92 343.2 242 70.7
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 2.1e-92 342.8 242 70.7
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 2.1e-92 342.8 242 70.7
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 2.8e-92 342.4 242 70.2
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 3.6e-92 342.0 274 64.6
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 3.6e-92 342.0 245 67.3
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 4.7e-92 341.7 226 73.0
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 1.1e-91 340.5 242 70.2
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.4e-91 340.1 242 71.1
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 1.8e-91 339.7 242 69.8
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 3.1e-91 339.0 242 70.7
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 8.9e-91 337.4 245 66.9
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 2.6e-90 335.9 243 70.0
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 1.7e-89 333.2 216 77.3
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 1.7e-89 333.2 242 68.2
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 2.2e-89 332.8 224 74.1
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 8.3e-89 330.9 226 72.6
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 1.4e-88 330.1 214 74.8
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 1.2e-87 327.0 227 70.9
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 1.6e-87 326.6 214 75.2
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 2.1e-87 326.2 243 67.9
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 2.1e-87 326.2 246 67.5
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 4.6e-87 325.1 227 70.9
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 6.0e-87 324.7 216 74.5
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 7.8e-87 324.3 208 76.0
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 1.0e-86 323.9 229 70.7
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 3.0e-86 322.4 224 72.3
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 3.9e-86 322.0 227 70.5
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 6.6e-86 321.2 208 76.4
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 3.3e-85 318.9 205 75.6
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 3.3e-85 318.9 225 68.0
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 9.5e-85 317.4 203 75.4
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 4.7e-84 315.1 216 71.8
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 6.8e-83 311.2 218 69.3
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 1.3e-81 307.0 214 69.6
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 4.3e-77 292.0 222 61.7
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 1.6e-76 290.0 222 60.4
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 5.8e-74 281.6 241 56.8
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 2.2e-73 279.6 222 60.4
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 2.5e-69 266.2 223 57.0
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 3.6e-68 262.3 195 68.7
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 3.6e-68 262.3 195 68.7
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 1.8e-67 260.0 169 72.2
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 9.9e-66 254.2 169 72.8
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 1.7e-65 253.4 134 85.1
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 3.2e-64 249.2 134 83.6
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 1.5e-58 230.3 157 71.3
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 9.9e-58 227.6 130 76.9
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.3e-57 227.3 122 83.6
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 6.7e-54 214.9 155 70.3
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 2.1e-47 193.4 167 59.9
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 4.5e-42 175.6 132 68.9
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 9.0e-35 151.4 97 73.2
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 1.7e-33 147.1 113 66.4
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 2.9e-33 146.4 90 81.1
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 1.5e-29 134.0 87 75.9
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 2.4e-27 126.7 205 34.1
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 2.8e-20 103.2 237 32.5
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 3.7e-12 76.3 40 82.5
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 4.8e-12 75.9 37 86.5
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 2.0e-10 70.5 64 54.7


User provided reference genes

Program Settings