Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01424 Eucalyptus grandis HOM05D006027 ORTHO05D007604 6.7e-99 364.0 182 100.0
PGR044G2038 Punica granatum HOM05D006027 ORTHO05D007604 3.8e-78 295.0 182 80.8
Thecc.01G249800 Theobroma cacao HOM05D006027 ORTHO05D007604 1.1e-72 276.9 182 77.5
Prupe.8G215000 Prunus persica HOM05D006027 ORTHO05D007604 7.0e-72 274.2 182 76.4
Dinv43066 Davidia involucrata HOM05D006027 ORTHO05D007604 1.6e-71 273.1 182 75.8
GSVIVG01028434001 Vitis vinifera HOM05D006027 ORTHO05D007604 7.7e-71 270.8 182 74.2
Haze_24710 Corylus avellana HOM05D006027 ORTHO05D007604 5.0e-70 268.1 185 75.1
CANSAT01G0515 Cannabis sativa HOM05D006027 ORTHO05D007604 6.5e-70 267.7 183 73.8
Gohir.A07G152700 Gossypium hirsutum HOM05D006027 ORTHO05D007604 6.5e-70 267.7 182 73.6
MD05G1188500 Malus domestica HOM05D006027 ORTHO05D007604 1.1e-69 266.9 182 76.4
QL09p041558 Quercus lobata HOM05D006027 ORTHO05D007604 1.1e-69 266.9 182 75.3
Gohir.D07G158900 Gossypium hirsutum HOM05D006027 ORTHO05D007604 1.9e-69 266.2 182 73.6
Duzib138G0534 Durio zibethinus HOM05D006027 ORTHO05D007604 2.5e-69 265.8 183 74.3
Duzib211G0648 Durio zibethinus HOM05D006027 ORTHO05D007604 2.5e-69 265.8 182 73.1
Gorai.001G182100 Gossypium raimondii HOM05D006027 ORTHO05D007604 2.5e-69 265.8 182 73.1
Manes.13G039500 Manihot esculenta HOM05D006027 ORTHO05D007604 7.2e-69 264.2 182 73.1
CANSAT01G2333 Cannabis sativa HOM05D006027 ORTHO05D007604 9.4e-69 263.8 184 74.5
Manes.12G038000 Manihot esculenta HOM05D006027 ORTHO05D007604 2.1e-68 262.7 182 73.6
FvH4_2g20470 Fragaria vesca HOM05D006027 ORTHO05D007604 6.1e-68 261.2 183 74.3
FAN24G3422 Fragaria x ananassa HOM05D006027 ORTHO05D007604 6.1e-68 261.2 183 74.3
FAN27G2528 Fragaria x ananassa HOM05D006027 ORTHO05D007604 1.0e-67 260.4 183 74.3
FAN15G2830 Fragaria x ananassa HOM05D006027 ORTHO05D007604 3.0e-67 258.8 183 73.8
TAR633G0397 Trochodendron aralioides HOM05D006027 ORTHO05D007604 3.0e-67 258.8 184 73.4
MD10G1176000 Malus domestica HOM05D006027 ORTHO05D007604 1.2e-66 256.9 182 73.1
Nn3g19801 Nelumbo nucifera HOM05D006027 ORTHO05D007604 1.2e-66 256.9 183 73.2
Atru.chr5.1865 Acer truncatum HOM05D006027 ORTHO05D007604 1.5e-66 256.5 182 68.7
TAR362G0914 Trochodendron aralioides HOM05D006027 ORTHO05D007604 2.6e-66 255.8 184 72.3
Aqoxy5G00130 Aquilegia oxysepala HOM05D006027 ORTHO05D007604 3.4e-66 255.4 184 67.9
PSO764G0320 Papaver somniferum HOM05D006027 ORTHO05D007604 1.7e-65 253.1 185 68.6
PSO832G0858 Papaver somniferum HOM05D006027 ORTHO05D007604 1.7e-65 253.1 184 67.9
Migut.D00479 Erythranthe guttata HOM05D006027 ORTHO05D007604 2.2e-65 252.7 183 70.5
Cfa002488 Carpinus fangiana HOM05D006027 ORTHO05D007604 3.7e-65 251.9 184 72.3
Glyma.13G127200 Glycine max HOM05D006027 ORTHO05D007604 3.7e-65 251.9 182 72.5
TWI18G0031 Tripterygium wilfordii HOM05D006027 ORTHO05D007604 6.3e-65 251.1 185 69.7
Sabra02G0194900 Salix brachista HOM05D006027 ORTHO05D007604 8.3e-65 250.8 182 68.7
DCAR_000568 Daucus carota HOM05D006027 ORTHO05D007604 1.1e-64 250.4 182 69.8
Lj5g0017558 Lotus japonicus HOM05D006027 ORTHO05D007604 2.4e-64 249.2 182 72.5
PGSC0003DMG400008585 Solanum tuberosum HOM05D006027 ORTHO05D007604 4.1e-64 248.4 182 70.3
Lalb_Chr06g0170731 Lupinus albus HOM05D006027 ORTHO05D007604 7.0e-64 247.7 185 71.4
Sopen09g025650 Solanum pennellii HOM05D006027 ORTHO05D007604 7.0e-64 247.7 182 70.3
Lalb_Chr02g0152741 Lupinus albus HOM05D006027 ORTHO05D007604 9.2e-64 247.3 183 71.0
Nitab4.5_0002435g0010 Nicotiana tabacum HOM05D006027 ORTHO05D007604 9.2e-64 247.3 182 69.8
CSS0010160 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 1.2e-63 246.9 181 70.2
Nitab4.5_0000845g0140 Nicotiana tabacum HOM05D006027 ORTHO05D007604 1.2e-63 246.9 182 69.8
MBI07_g08912_MAGBIO Magnolia biondii HOM05D006027 ORTHO05D007604 1.6e-63 246.5 183 71.0
Potri.002G256400 Populus trichocarpa HOM05D006027 ORTHO05D007604 1.6e-63 246.5 182 68.7
CSS0012566 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 2.0e-63 246.1 181 69.6
CAN.G536.12 Capsicum annuum HOM05D006027 ORTHO05D007604 2.0e-63 246.1 182 70.3
Solyc09g064500.3 Solanum lycopersicum HOM05D006027 ORTHO05D007604 2.0e-63 246.1 182 69.8
ClCG06G001400 Citrullus lanatus HOM05D006027 ORTHO05D007604 2.7e-63 245.7 187 69.0
SGA_v2.0_scaffold1G00660 Striga asiatica HOM05D006027 ORTHO05D007604 3.5e-63 245.4 187 70.1
vmacro14793 Vaccinium macrocarpon HOM05D006027 ORTHO05D007604 3.5e-63 245.4 185 70.3
Actinidia23700 Actinidia chinensis HOM05D006027 ORTHO05D007604 5.9e-63 244.6 182 69.2
Glyma.10G040600 Glycine max HOM05D006027 ORTHO05D007604 5.9e-63 244.6 182 69.8
Lj1C74G4 Lonicera japonica HOM05D006027 ORTHO05D007604 5.9e-63 244.6 158 77.8
VMungo0720G1620 Vigna mungo HOM05D006027 ORTHO05D007604 7.7e-63 244.2 182 70.3
Actinidia09513 Actinidia chinensis HOM05D006027 ORTHO05D007604 1.7e-62 243.0 182 68.7
MELO3C022393.2 Cucumis melo HOM05D006027 ORTHO05D007604 2.9e-62 242.3 184 68.5
arahy.Tifrunner.gnm1.ann1.72UZ71 Arachis hypogaea HOM05D006027 ORTHO05D007604 1.1e-61 240.4 182 67.6
arahy.Tifrunner.gnm1.ann1.FRV526 Arachis hypogaea HOM05D006027 ORTHO05D007604 1.1e-61 240.4 182 67.6
HanXRQChr01g0014971 Helianthus annuus HOM05D006027 ORTHO05D007604 1.1e-61 240.4 183 65.6
Phvul.007G153500 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 2.5e-61 239.2 182 69.2
Cc01_g17770 Coffea canephora HOM05D006027 ORTHO05D007604 3.3e-61 238.8 183 67.2
CDE02G4364 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 4.3e-61 238.4 183 70.5
TPR.G5919 Trifolium pratense HOM05D006027 ORTHO05D007604 5.6e-61 238.0 183 69.4
Medtr1g069465 Medicago truncatula HOM05D006027 ORTHO05D007604 4.7e-60 235.0 183 68.3
Ca_09646_v3 Cicer arietinum L. HOM05D006027 ORTHO05D007604 8.0e-60 234.2 183 66.7
Lsat_1_v5_gn_5_181161 Lactuca sativa HOM05D006027 ORTHO05D007604 6.8e-59 231.1 183 65.0
Oeu015437.1 Olea europaea HOM05D006027 ORTHO05D007604 2.6e-58 229.2 157 72.6
Oeu052083.1 Olea europaea HOM05D006027 ORTHO05D007604 2.6e-58 229.2 145 77.9
Psat6g062520 Pisum sativum HOM05D006027 ORTHO05D007604 3.4e-58 228.8 183 66.7
Hund18287 Selenicereus undatus HOM05D006027 ORTHO05D007604 9.8e-58 227.3 181 63.5
Phvul.001G165200 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 3.7e-57 225.3 181 64.6
Rhsim01G0260300 Rhododendron simsii HOM05D006027 ORTHO05D007604 3.7e-57 225.3 151 72.8
Ciclev10022322m.g Citrus clementina HOM05D006027 ORTHO05D007604 3.2e-56 222.2 171 63.7
Sed0007731 Sechium edule HOM05D006027 ORTHO05D007604 3.2e-56 222.2 146 74.0
THA.LOC104814531 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 4.1e-56 221.9 182 62.1
VMungo1383G1953 Vigna mungo HOM05D006027 ORTHO05D007604 5.4e-56 221.5 182 63.7
HPP92_008468 Vanilla planifolia HOM05D006027 ORTHO05D007604 7.0e-56 221.1 183 63.4
Os01g0938100 Oryza sativa ssp. japonica HOM05D006027 ORTHO05D007604 1.6e-55 219.9 181 64.1
COL.COLO4_10205 Corchorus olitorius HOM05D006027 ORTHO05D007604 2.7e-55 219.2 114 91.2
HPP92_027289 Vanilla planifolia HOM05D006027 ORTHO05D007604 4.6e-55 218.4 153 68.6
Zm00001eb141870 Zea mays HOM05D006027 ORTHO05D007604 5.9e-55 218.0 183 62.8
AUR62025437 Chenopodium quinoa HOM05D006027 ORTHO05D007604 7.8e-55 217.6 183 62.3
Sc05g0002880 Simmondsia chinensis HOM05D006027 ORTHO05D007604 7.8e-55 217.6 174 67.8
Peaxi162Scf00043g00255 Petunia axillaris HOM05D006027 ORTHO05D007604 1.0e-54 217.2 116 88.8
THA.LOC104820068 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 1.7e-54 216.5 186 64.5
Cpa.g.sc87.33 Carica papaya HOM05D006027 ORTHO05D007604 3.0e-54 215.7 115 88.7
Aa31LG2G21720 Aethionema arabicum HOM05D006027 ORTHO05D007604 1.5e-53 213.4 183 61.2
BraA01t00872Z Brassica rapa HOM05D006027 ORTHO05D007604 1.9e-53 213.0 154 66.9
ECA248G3782 Erigeron canadensis HOM05D006027 ORTHO05D007604 1.9e-53 213.0 148 68.9
A01p09280 Brassica napus HOM05D006027 ORTHO05D007604 2.5e-53 212.6 184 58.7
C07p56360 Brassica napus HOM05D006027 ORTHO05D007604 3.3e-53 212.2 184 59.2
BolC7t46115H Brassica oleracea HOM05D006027 ORTHO05D007604 3.3e-53 212.2 184 59.2
BcaC06g32609 Brassica carinata HOM05D006027 ORTHO05D007604 4.3e-53 211.8 154 66.2
AT4G28660 Arabidopsis thaliana HOM05D006027 ORTHO05D007604 5.6e-53 211.5 183 60.1
A03p58340 Brassica napus HOM05D006027 ORTHO05D007604 7.3e-53 211.1 184 58.7
Sp7g26630 Schrenkiella parvula HOM05D006027 ORTHO05D007604 1.6e-52 209.9 180 60.6
SalBow4G0311 Salvia bowleyana HOM05D006027 ORTHO05D007604 2.1e-52 209.5 116 87.1
CARHR236440 Cardamine hirsuta HOM05D006027 ORTHO05D007604 4.7e-52 208.4 180 61.1
Carub.0007s1200 Capsella rubella HOM05D006027 ORTHO05D007604 8.0e-52 207.6 146 67.8
Thhalv10026347m.g Eutrema salsugineum HOM05D006027 ORTHO05D007604 1.0e-51 207.2 177 59.9
AL7G23880 Arabidopsis lyrata HOM05D006027 ORTHO05D007604 2.3e-51 206.1 182 58.2
EL10Ac7g17691 Beta vulgaris HOM05D006027 ORTHO05D007604 4.0e-51 205.3 199 57.3
C01p10860 Brassica napus HOM05D006027 ORTHO05D007604 4.0e-51 205.3 184 57.1
BcaNung04696 Brassica carinata HOM05D006027 ORTHO05D007604 5.2e-51 204.9 186 57.5
unitig_8.g3074 Utricularia gibba HOM05D006027 ORTHO05D007604 8.9e-51 204.1 184 58.7
ATR0787G157 Amborella trichopoda HOM05D006027 ORTHO05D007604 1.5e-50 203.4 115 84.3
AUR62008802 Chenopodium quinoa HOM05D006027 ORTHO05D007604 2.0e-50 203.0 118 79.7
Zm00001eb141830 Zea mays HOM05D006027 ORTHO05D007604 2.0e-50 203.0 114 84.2
BolC1t01050H Brassica oleracea HOM05D000022 ORTHO05D000744 8.3e-49 197.6 177 57.6
CiPaw.03G271300 Carya illinoinensis HOM05D006027 ORTHO05D007604 2.7e-47 192.6 182 60.4
Mapoly0042s0085 Marchantia polymorpha HOM05D006027 ORTHO05D007604 1.0e-46 190.7 195 54.4
Pp3c7_5450 Physcomitrium patens HOM05D006027 ORTHO05D007604 5.8e-42 174.9 164 54.9
SMO347G0509 Selaginella moellendorffii HOM05D006027 ORTHO05D007604 1.3e-41 173.7 115 71.3
AagrBONN_evm.TU.Sc2ySwM_340.224 Anthoceros agrestis HOM05D006027 ORTHO05D007604 8.3e-41 171.0 109 70.6
Pp3c11_18280 Physcomitrium patens HOM05D006027 ORTHO05D007604 7.1e-40 167.9 149 55.7
CBR_g12742 Chara braunii HOM05D006027 ORTHO05D007604 4.7e-36 155.2 110 62.7
MCO16G336 Micromonas commoda HOM05D006027 ORTHO05D007604 2.0e-34 149.8 110 60.9
Cre10.g440450 Chlamydomonas reinhardtii HOM05D006027 ORTHO05D007604 9.9e-34 147.5 109 61.5
Ah.15g092630 Amaranthus hybridus HOM05D006027 ORTHO05D007604 2.9e-33 146.0 111 65.8
PRCOL_00005949 Prasinoderma coloniale HOM05D006027 ORTHO05D007604 1.9e-32 143.3 106 58.5
CSS0017427 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 3.1e-27 125.9 141 54.6
RcHm_v2.0_Chr6g0286561 Rosa chinensis HOM05D006027 ORTHO05D007604 3.2e-24 115.9 104 62.5
Zm00001eb141750 Zea mays HOM05D006027 ORTHO05D007604 1.5e-21 107.1 59 83.1
Zm00001eb141790 Zea mays HOM05D006027 ORTHO05D007604 1.5e-21 107.1 59 83.1
CDE09G0356 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 7.6e-18 94.7 111 56.8
TAR362G0025 Trochodendron aralioides HOM05D006027 ORTHO05D007604 9.9e-18 94.4 59 76.3
Zm00001eb141760 Zea mays HOM05D006027 ORTHO05D007604 2.7e-15 86.3 52 76.9


User provided reference genes

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