Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 6.2e-130 467.6 260 100.0
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.0e-68 264.2 173 74.6
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 1.1e-65 254.2 174 73.6
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 1.8e-65 253.4 174 73.6
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 5.3e-65 251.9 173 72.3
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 1.0e-63 247.7 168 74.4
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 6.5e-63 245.0 166 72.9
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 1.4e-62 243.8 167 70.7
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 4.2e-62 242.3 166 72.3
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 4.2e-62 242.3 167 72.5
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 4.2e-62 242.3 167 69.5
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 9.4e-62 241.1 167 68.3
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 6.1e-61 238.4 163 71.2
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 7.9e-61 238.0 161 73.3
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 1.0e-60 237.7 166 68.1
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 1.4e-60 237.3 165 69.7
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 2.3e-60 236.5 166 69.9
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 2.3e-60 236.5 165 67.9
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 6.7e-60 235.0 158 75.9
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 1.1e-59 234.2 165 67.9
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.5e-59 233.8 167 68.3
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 1.5e-59 233.8 167 68.3
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 1.5e-59 233.8 164 73.8
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 1.5e-59 233.8 163 69.3
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 2.0e-59 233.4 160 70.6
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 2.6e-59 233.0 163 69.9
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 2.6e-59 233.0 156 73.7
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 3.3e-59 232.6 159 71.1
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 3.3e-59 232.6 163 72.4
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 3.3e-59 232.6 158 69.6
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 9.7e-59 231.1 165 67.3
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 1.7e-58 230.3 169 68.0
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 1.7e-58 230.3 163 68.7
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 1.7e-58 230.3 164 72.6
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 2.8e-58 229.6 169 68.0
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 2.8e-58 229.6 166 66.9
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 2.8e-58 229.6 165 67.9
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 2.8e-58 229.6 154 71.4
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 2.8e-58 229.6 154 71.4
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 3.7e-58 229.2 164 68.9
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 3.7e-58 229.2 165 67.3
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 8.2e-58 228.0 169 68.6
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 1.1e-57 227.6 164 68.3
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 1.1e-57 227.6 149 77.2
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.1e-57 227.6 165 66.7
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 1.4e-57 227.3 164 68.3
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 1.8e-57 226.9 155 69.7
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 3.1e-57 226.1 154 71.4
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 3.1e-57 226.1 169 68.0
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 3.1e-57 226.1 172 65.1
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 9.1e-57 224.6 164 67.7
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 9.1e-57 224.6 164 67.7
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 9.1e-57 224.6 164 67.7
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 9.1e-57 224.6 154 70.8
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 9.1e-57 224.6 167 66.5
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 1.2e-56 224.2 161 71.4
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.2e-56 224.2 161 71.4
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 2.0e-56 223.4 157 68.8
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 2.0e-56 223.4 169 67.5
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 2.0e-56 223.4 161 71.4
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 2.6e-56 223.0 154 70.1
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 2.6e-56 223.0 154 70.1
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 4.5e-56 222.2 155 69.0
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 5.9e-56 221.9 161 70.2
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 5.9e-56 221.9 168 66.7
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 7.7e-56 221.5 155 70.3
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 1.3e-55 220.7 166 65.1
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 2.2e-55 219.9 170 68.8
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 6.5e-55 218.4 157 68.8
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 1.1e-54 217.6 167 66.5
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.4e-54 217.2 148 74.3
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 6.1e-53 211.8 158 67.7
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 7.9e-53 211.5 140 74.3
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.0e-52 211.1 173 64.2
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 1.1e-51 207.6 166 62.7
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 1.5e-51 207.2 194 55.2
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 2.6e-51 206.5 166 62.0
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 3.3e-51 206.1 145 69.7
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 3.3e-51 206.1 154 64.9
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 1.7e-50 203.8 154 63.0
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 2.8e-50 203.0 166 63.9
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 3.7e-50 202.6 149 68.5
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 6.3e-50 201.8 148 66.2
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 6.3e-50 201.8 166 63.9
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 6.3e-50 201.8 154 63.0
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 8.2e-50 201.4 166 62.0
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 1.1e-49 201.1 138 69.6
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 2.4e-49 199.9 233 50.2
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 2.4e-49 199.9 135 70.4
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 4.1e-49 199.1 168 60.1
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 5.3e-49 198.7 170 60.0
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 5.3e-49 198.7 164 61.6
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 2.6e-48 196.4 155 61.9
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 4.5e-48 195.7 170 57.6
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 5.9e-48 195.3 167 58.1
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 5.9e-48 195.3 170 58.2
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 2.2e-47 193.4 210 53.3
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 8.5e-47 191.4 155 62.6
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 1.1e-46 191.0 131 74.0
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 7.2e-46 188.3 155 63.9
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 2.7e-45 186.4 166 62.0
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 2.3e-44 183.3 129 68.2
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 1.5e-43 180.6 136 66.9
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 2.6e-43 179.9 145 66.9
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 2.8e-42 176.4 144 63.2
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 3.1e-41 172.9 145 60.0
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 4.5e-40 169.1 145 56.6
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.0e-39 167.9 103 78.6
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 2.2e-39 166.8 135 62.2
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 1.2e-35 154.5 127 63.0
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.3e-34 151.0 124 65.3
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 1.4e-33 147.5 109 70.6
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 7.7e-32 141.7 91 73.6
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 3.8e-31 139.4 125 64.8
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 8.6e-31 138.3 83 80.7
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 1.5e-30 137.5 99 69.7
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 5.5e-30 135.6 114 64.9
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 4.0e-28 129.4 133 49.6
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.3e-23 114.4 82 65.9
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 1.7e-23 114.0 66 77.3
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 2.3e-23 113.6 118 47.5
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 1.4e-20 104.4 101 55.4
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 1.7e-18 97.4 55 80.0
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 3.7e-18 96.3 84 57.1
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 3.7e-18 96.3 84 57.1
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.1e-17 94.7 78 62.8
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.2e-16 91.3 54 79.6
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 6.0e-16 89.0 53 79.2
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 1.7e-15 87.4 58 74.1
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 3.6e-13 79.7 49 77.6
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 4.9e-10 69.3 84 33.3


User provided reference genes

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