Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01374 Eucalyptus grandis HOM05D000913 ORTHO05D000687 2.2e-48 195.3 98 100.0
Eucgr.K01377 Eucalyptus grandis HOM05D000913 ORTHO05D000687 1.3e-32 142.9 102 77.5
Eucgr.K01375 Eucalyptus grandis HOM05D000913 ORTHO05D000687 1.2e-14 83.2 90 51.1
Potri.014G171300 Populus trichocarpa HOM05D000913 ORTHO05D000687 4.7e-14 81.3 104 50.0
Eucgr.K01380 Eucalyptus grandis HOM05D000913 ORTHO05D000687 1.8e-13 79.3 100 46.0
Potri.014G171500 Populus trichocarpa HOM05D000913 ORTHO05D000687 4.0e-13 78.2 104 49.0
Sabra01G0038000 Salix brachista HOM05D000913 ORTHO05D000687 8.8e-13 77.0 103 48.5
Manes.13G059500 Manihot esculenta HOM05D000913 ORTHO05D000687 1.5e-12 76.3 104 48.1
TWI36G0980 Tripterygium wilfordii HOM05D000913 ORTHO05D000687 2.0e-12 75.9 100 45.0
TWI36G1096 Tripterygium wilfordii HOM05D000913 ORTHO05D000687 1.3e-11 73.2 83 48.2
TWI36G1369 Tripterygium wilfordii HOM05D000913 ORTHO05D000687 1.3e-11 73.2 98 45.9
Prupe.3G193500 Prunus persica HOM05D000913 ORTHO05D000687 1.7e-11 72.8 104 43.3
DCAR_019659 Daucus carota HOM05D000913 ORTHO05D000687 2.2e-11 72.4 106 43.4
FAN09G0650 Fragaria x ananassa HOM05D000913 ORTHO05D000687 2.2e-11 72.4 108 45.4
Potri.009G048400 Populus trichocarpa HOM05D000913 ORTHO05D000687 2.8e-11 72.0 103 46.6
Eucgr.K01379 Eucalyptus grandis HOM05D000913 ORTHO05D000687 6.3e-11 70.9 68 54.4
Gohir.D11G154000 Gossypium hirsutum HOM05D000913 ORTHO05D000687 6.3e-11 70.9 100 47.0
Gorai.007G164100 Gossypium raimondii HOM05D000913 ORTHO05D000687 6.3e-11 70.9 100 47.0
Medtr3g082260 Medicago truncatula HOM05D000913 ORTHO05D000687 6.3e-11 70.9 103 41.7
BcaB03g14690 Brassica carinata HOM05D000913 ORTHO05D000687 1.1e-10 70.1 112 41.1
TWI75G1832 Tripterygium wilfordii HOM05D000913 ORTHO05D000687 1.1e-10 70.1 89 44.9
Aqoxy4G01749 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 1.4e-10 69.7 109 44.0
DCAR_021080 Daucus carota HOM05D000913 ORTHO05D000687 1.4e-10 69.7 101 43.6
Medtr3g082250 Medicago truncatula HOM05D000913 ORTHO05D000687 1.4e-10 69.7 101 40.6
QL04p074221 Quercus lobata HOM05D000913 ORTHO05D000687 1.4e-10 69.7 97 44.3
Ciclev10017001m.g Citrus clementina HOM05D000913 ORTHO05D000687 1.8e-10 69.3 106 46.2
Gohir.D07G169300 Gossypium hirsutum HOM05D000913 ORTHO05D000687 1.8e-10 69.3 103 45.6
Potri.009G048100 Populus trichocarpa HOM05D000913 ORTHO05D000687 1.8e-10 69.3 103 45.6
Gorai.001G189300 Gossypium raimondii HOM05D000913 ORTHO05D000687 2.4e-10 68.9 103 45.6
Thecc.01G201000 Theobroma cacao HOM05D000913 ORTHO05D000687 2.4e-10 68.9 103 44.7
FAN05G2837 Fragaria x ananassa HOM05D000913 ORTHO05D000687 3.1e-10 68.6 107 43.9
Nitab4.5_0006767g0010 Nicotiana tabacum HOM05D000913 ORTHO05D000687 3.1e-10 68.6 107 38.3
BolC3t16566H Brassica oleracea HOM05D000913 ORTHO05D000687 4.1e-10 68.2 112 41.1
Ciclev10018068m.g Citrus clementina HOM05D000913 ORTHO05D000687 4.1e-10 68.2 110 44.5
FAN02G3220 Fragaria x ananassa HOM05D000913 ORTHO05D000687 4.1e-10 68.2 108 45.4
BcaC01g04273 Brassica carinata HOM05D000913 ORTHO05D000687 7.0e-10 67.4 112 41.1
C03p42980 Brassica napus HOM05D000913 ORTHO05D000687 7.0e-10 67.4 112 41.1
BraA03t12715Z Brassica rapa HOM05D000913 ORTHO05D000687 7.0e-10 67.4 112 41.1
Dinv05335 Davidia involucrata HOM05D000913 ORTHO05D000687 7.0e-10 67.4 101 42.6
Gohir.A07G162700 Gossypium hirsutum HOM05D000913 ORTHO05D000687 7.0e-10 67.4 103 44.7
Medtr1g041690 Medicago truncatula HOM05D000913 ORTHO05D000687 7.0e-10 67.4 103 40.8
A03p35370 Brassica napus HOM05D000913 ORTHO05D000687 9.1e-10 67.0 112 41.1
Medtr3g082210 Medicago truncatula HOM05D000913 ORTHO05D000687 9.1e-10 67.0 104 44.2
Psat5g105760 Pisum sativum HOM05D000913 ORTHO05D000687 9.1e-10 67.0 110 40.0
QL04p066360 Quercus lobata HOM05D000913 ORTHO05D000687 9.1e-10 67.0 101 44.6
QL12p009146 Quercus lobata HOM05D000913 ORTHO05D000687 9.1e-10 67.0 100 40.0
QL12p009157 Quercus lobata HOM05D000913 ORTHO05D000687 9.1e-10 67.0 111 42.3
Cpa.g.sc136.67 Carica papaya HOM05D000913 ORTHO05D000687 1.2e-09 66.6 107 42.1
GSVIVG01026843001 Vitis vinifera HOM05D000913 ORTHO05D000687 1.2e-09 66.6 103 44.7
QL04p074148 Quercus lobata HOM05D000913 ORTHO05D000687 1.6e-09 66.2 100 40.0
FvH4_6g40280 Fragaria vesca HOM05D000913 ORTHO05D000687 2.0e-09 65.9 108 42.6
FAN14G2134 Fragaria x ananassa HOM05D000913 ORTHO05D000687 2.0e-09 65.9 108 42.6
Gorai.007G164300 Gossypium raimondii HOM05D000913 ORTHO05D000687 2.0e-09 65.9 107 43.9
Manes.12G067600 Manihot esculenta HOM05D000913 ORTHO05D000687 2.0e-09 65.9 110 43.6
Potri.009G048300 Populus trichocarpa HOM05D000913 ORTHO05D000687 2.0e-09 65.9 101 44.6
Migut.M00555 Erythranthe guttata HOM05D000913 ORTHO05D000687 2.7e-09 65.5 105 44.8
Migut.M00556 Erythranthe guttata HOM05D000913 ORTHO05D000687 2.7e-09 65.5 105 44.8
Gohir.D11G154200 Gossypium hirsutum HOM05D000913 ORTHO05D000687 2.7e-09 65.5 107 43.9
TPR.G27426 Trifolium pratense HOM05D000913 ORTHO05D000687 2.7e-09 65.5 104 42.3
QL04p066324 Quercus lobata HOM05D000913 ORTHO05D000687 3.5e-09 65.1 102 38.2
QL04p066308 Quercus lobata HOM05D000913 ORTHO05D000687 4.5e-09 64.7 99 44.4
QL04p074171 Quercus lobata HOM05D000913 ORTHO05D000687 4.5e-09 64.7 116 38.8
Cpa.g.sc136.68 Carica papaya HOM05D000913 ORTHO05D000687 5.9e-09 64.3 88 45.5
DCAR_008755 Daucus carota HOM05D000913 ORTHO05D000687 5.9e-09 64.3 107 42.1
Prupe.3G193600 Prunus persica HOM05D000913 ORTHO05D000687 5.9e-09 64.3 101 43.6
GSVIVG01030137001 Vitis vinifera HOM05D000913 ORTHO05D000687 5.9e-09 64.3 99 43.4
Actinidia12346 Actinidia chinensis HOM05D000913 ORTHO05D000687 7.7e-09 63.9 107 44.9
Gohir.A11G147300 Gossypium hirsutum HOM05D000913 ORTHO05D000687 7.7e-09 63.9 59 59.3
Cfa014196 Carpinus fangiana HOM05D000913 ORTHO05D000687 1.3e-08 63.2 105 38.1
QL04p074133 Quercus lobata HOM05D000913 ORTHO05D000687 1.3e-08 63.2 111 41.4
CiPaw.10G022900 Carya illinoinensis HOM05D000913 ORTHO05D000687 1.7e-08 62.8 96 40.6
DCAR_021079 Daucus carota HOM05D000913 ORTHO05D000687 1.7e-08 62.8 110 38.2
Migut.M00531 Erythranthe guttata HOM05D000913 ORTHO05D000687 1.7e-08 62.8 105 43.8
QL04p074188 Quercus lobata HOM05D000913 ORTHO05D000687 2.2e-08 62.4 86 45.3
Actinidia12348 Actinidia chinensis HOM05D000913 ORTHO05D000687 2.9e-08 62.0 61 60.7
CiPaw.03G195900 Carya illinoinensis HOM05D000913 ORTHO05D000687 2.9e-08 62.0 112 42.0
Peaxi162Scf00111g10031 Petunia axillaris HOM05D000913 ORTHO05D000687 2.9e-08 62.0 110 36.4
Cc05_g09770 Coffea canephora HOM05D000913 ORTHO05D000687 3.8e-08 61.6 110 40.0
MD03G1038100 Malus domestica HOM05D000913 ORTHO05D000687 3.8e-08 61.6 106 42.5
Cfa014197 Carpinus fangiana HOM05D000913 ORTHO05D000687 5.0e-08 61.2 105 38.1
Ca_27958_v3 Cicer arietinum L. HOM05D000913 ORTHO05D000687 5.0e-08 61.2 108 36.1
Dinv05336 Davidia involucrata HOM05D000913 ORTHO05D000687 5.0e-08 61.2 100 41.0
QL04p075609 Quercus lobata HOM05D000913 ORTHO05D000687 5.0e-08 61.2 100 44.0
Sabra14G0130500 Salix brachista HOM05D000913 ORTHO05D000687 5.0e-08 61.2 94 42.6
MBI15_g37255_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 6.5e-08 60.8 108 39.8
QL04p074203 Quercus lobata HOM05D000913 ORTHO05D000687 6.5e-08 60.8 110 39.1
Cc05_g09760 Coffea canephora HOM05D000913 ORTHO05D000687 8.5e-08 60.5 110 40.0
DCAR_015686 Daucus carota HOM05D000913 ORTHO05D000687 8.5e-08 60.5 103 37.9
HanXRQChr01g0023431 Helianthus annuus HOM05D000913 ORTHO05D000687 8.5e-08 60.5 83 44.6
QL04p075739 Quercus lobata HOM05D000913 ORTHO05D000687 8.5e-08 60.5 101 40.6
QL04p075755 Quercus lobata HOM05D000913 ORTHO05D000687 8.5e-08 60.5 101 40.6
QL05p057732 Quercus lobata HOM05D000913 ORTHO05D000687 8.5e-08 60.5 101 40.6
CiPaw.10G023100 Carya illinoinensis HOM05D000913 ORTHO05D000687 1.1e-07 60.1 76 47.4
Duzib133G0202 Durio zibethinus HOM05D000913 ORTHO05D000687 1.1e-07 60.1 100 39.0
LjContig00029g0025163 Lotus japonicus HOM05D000913 ORTHO05D000687 1.1e-07 60.1 109 40.4
QL04p075073 Quercus lobata HOM05D000913 ORTHO05D000687 1.1e-07 60.1 99 39.4
QL04p074182 Quercus lobata HOM05D000913 ORTHO05D000687 1.5e-07 59.7 77 46.8
RcHm_v2.0_Chr2g0155471 Rosa chinensis HOM05D000913 ORTHO05D000687 1.5e-07 59.7 105 47.6
CsaV3_6G009780 Cucumis sativus L. HOM05D000913 ORTHO05D000687 1.9e-07 59.3 82 39.0
HanXRQChr01g0023451 Helianthus annuus HOM05D000913 ORTHO05D000687 1.9e-07 59.3 83 43.4
QL05p005810 Quercus lobata HOM05D000913 ORTHO05D000687 1.9e-07 59.3 77 46.8
Atru.chr6.3443 Acer truncatum HOM05D000913 ORTHO05D000687 2.5e-07 58.9 105 41.9
Dinv21327 Davidia involucrata HOM05D000913 ORTHO05D000687 2.5e-07 58.9 106 42.5
Eucgr.A00960 Eucalyptus grandis HOM05D000913 ORTHO05D000687 2.5e-07 58.9 96 41.7
RcHm_v2.0_Chr2g0155451 Rosa chinensis HOM05D000913 ORTHO05D000687 2.5e-07 58.9 65 52.3
CARHR082300 Cardamine hirsuta HOM05D000913 ORTHO05D000687 3.2e-07 58.5 121 34.7
Duzib138G1058 Durio zibethinus HOM05D000913 ORTHO05D000687 3.2e-07 58.5 100 44.0
QL04p074116 Quercus lobata HOM05D000913 ORTHO05D000687 3.2e-07 58.5 99 36.4
Duzib211G0303 Durio zibethinus HOM05D000913 ORTHO05D000687 4.2e-07 58.2 105 41.9
MBI14_g17948_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 4.2e-07 58.2 75 42.7
QL05p004788 Quercus lobata HOM05D000913 ORTHO05D000687 4.2e-07 58.2 78 50.0
GSVIVG01030135001 Vitis vinifera HOM05D000913 ORTHO05D000687 4.2e-07 58.2 95 42.1
Haze_12574 Corylus avellana HOM05D004102 ORTHO05D000687 5.5e-07 57.8 99 39.4
MBI14_g16762_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 5.5e-07 57.8 104 40.4
MD11G1039200 Malus domestica HOM05D000913 ORTHO05D000687 5.5e-07 57.8 102 39.2
Prupe.6G030300 Prunus persica HOM05D000913 ORTHO05D000687 5.5e-07 57.8 103 43.7
RcHm_v2.0_Chr5g0042671 Rosa chinensis HOM05D000913 ORTHO05D000687 5.5e-07 57.8 101 39.6
TAR629G2544 Trochodendron aralioides HOM05D000913 ORTHO05D000687 5.5e-07 57.8 102 38.2
vmacro12050 Vaccinium macrocarpon HOM05D000913 ORTHO05D000687 5.5e-07 57.8 72 45.8
Duzib213G0455 Durio zibethinus HOM05D000913 ORTHO05D000687 7.2e-07 57.4 64 48.4
MBI14_g15410_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 7.2e-07 57.4 77 45.5
Nitab4.5_0006767g0020 Nicotiana tabacum HOM05D000913 ORTHO05D000687 7.2e-07 57.4 110 36.4
Gohir.A11G147350 Gossypium hirsutum HOM05D000913 ORTHO05D000687 9.4e-07 57.0 109 39.4
HanXRQChr03g0081521 Helianthus annuus HOM05D000041 ORTHO05D000452 9.4e-07 57.0 60 51.7
TPR.G10635 Trifolium pratense HOM05D000913 ORTHO05D000687 9.4e-07 57.0 99 39.4
CANSAT64G0066 Cannabis sativa HOM05D000913 ORTHO05D000687 1.2e-06 56.6 105 35.2
FAN25G3293 Fragaria x ananassa HOM05D000913 ORTHO05D000687 1.2e-06 56.6 101 42.6
Nitab4.5_0002251g0060 Nicotiana tabacum HOM05D016078 ORTHO05D018050 1.2e-06 56.6 101 34.7
TPR.G33738 Trifolium pratense HOM05D000913 ORTHO05D000687 1.2e-06 56.6 94 41.5
TAR629G0096 Trochodendron aralioides HOM05D000913 ORTHO05D000687 1.2e-06 56.6 77 44.2
Haze_12579 Corylus avellana HOM05D000913 ORTHO05D000687 1.6e-06 56.2 102 39.2
HanXRQChr04g0126321 Helianthus annuus HOM05D000913 ORTHO05D000687 1.6e-06 56.2 86 41.9
QL04p074166 Quercus lobata HOM05D000913 ORTHO05D000687 1.6e-06 56.2 100 38.0
SalBow8G2786 Salvia bowleyana HOM05D000913 ORTHO05D000687 1.6e-06 56.2 102 36.3
COL.COLO4_19669 Corchorus olitorius HOM05D000913 ORTHO05D000687 2.1e-06 55.8 61 55.7
FvH4_3g24100 Fragaria vesca HOM05D000913 ORTHO05D000687 2.1e-06 55.8 101 42.6
FAN11G2899 Fragaria x ananassa HOM05D009841 ORTHO05D012869 2.1e-06 55.8 101 42.6
LjContig00029g0010664 Lotus japonicus HOM05D000913 ORTHO05D000687 2.1e-06 55.8 63 42.9
Atru.chr1.4053 Acer truncatum HOM05D000913 ORTHO05D000687 2.7e-06 55.5 105 44.8
Aa31LG5G18190 Aethionema arabicum HOM05D000913 ORTHO05D000687 2.7e-06 55.5 55 58.2
Aqoxy7G02044 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 2.7e-06 55.5 96 40.6
Haze_12577 Corylus avellana HOM05D000913 ORTHO05D000687 2.7e-06 55.5 100 37.0
MELO3C013462.2 Cucumis melo HOM05D000913 ORTHO05D000687 2.7e-06 55.5 82 39.0
Nitab4.5_0006633g0010 Nicotiana tabacum HOM05D016078 ORTHO05D018050 2.7e-06 55.5 108 35.2
QL05p004858 Quercus lobata HOM05D000913 ORTHO05D000687 2.7e-06 55.5 75 48.0
SalBow5G0011 Salvia bowleyana HOM05D000913 ORTHO05D000687 2.7e-06 55.5 101 41.6
SalBow5G4967 Salvia bowleyana HOM05D000913 ORTHO05D000687 2.7e-06 55.5 101 41.6
Atru.chr6.3444 Acer truncatum HOM05D000913 ORTHO05D000687 3.6e-06 55.1 75 45.3
CiPaw.10G022600 Carya illinoinensis HOM05D000913 ORTHO05D000687 3.6e-06 55.1 57 57.9
Dinv03824 Davidia involucrata HOM05D000913 ORTHO05D000687 3.6e-06 55.1 106 42.5
MBI14_g48110_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 3.6e-06 55.1 76 46.1
QL04p066367 Quercus lobata HOM05D000913 ORTHO05D000687 3.6e-06 55.1 100 38.0
arahy.Tifrunner.gnm1.ann1.483BUB Arachis hypogaea HOM05D000913 ORTHO05D000687 4.7e-06 54.7 102 39.2
Cfa014195 Carpinus fangiana HOM05D000913 ORTHO05D000687 4.7e-06 54.7 103 37.9
Prupe.6G030200 Prunus persica HOM05D000913 ORTHO05D000687 4.7e-06 54.7 107 43.9
VMungo0647G1502 Vigna mungo HOM05D000913 ORTHO05D000687 4.7e-06 54.7 107 40.2
GSVIVG01014802001 Vitis vinifera HOM05D000913 ORTHO05D000687 4.7e-06 54.7 106 38.7
Glyma.09G179800 Glycine max HOM05D000913 ORTHO05D000687 6.1e-06 54.3 95 37.9
MBI14_g16764_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 6.1e-06 54.3 76 46.1
Thecc.07G006400 Theobroma cacao HOM05D000913 ORTHO05D000687 6.1e-06 54.3 58 50.0
A05p40590 Brassica napus HOM05D000913 ORTHO05D000687 8.0e-06 53.9 55 54.5
BraA05t22790Z Brassica rapa HOM05D000913 ORTHO05D000687 8.0e-06 53.9 55 54.5
COL.COLO4_07756 Corchorus olitorius HOM05D000913 ORTHO05D000687 8.0e-06 53.9 103 38.8
Gohir.A08G009300 Gossypium hirsutum HOM05D000913 ORTHO05D000687 8.0e-06 53.9 52 55.8
Gohir.D08G019400 Gossypium hirsutum HOM05D000913 ORTHO05D000687 8.0e-06 53.9 52 55.8
Lsat_1_v5_gn_7_98820 Lactuca sativa HOM05D000913 ORTHO05D000687 8.0e-06 53.9 96 35.4
MBI16_g31487_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 8.0e-06 53.9 53 47.2


User provided reference genes

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