Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 9.8e-138 493.4 244 100.0
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 8.6e-41 171.4 196 46.9
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 6.1e-39 165.2 233 43.8
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 9.8e-37 157.9 196 44.9
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 2.0e-34 150.2 239 39.7
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 2.3e-33 146.7 239 41.8
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 1.5e-32 144.1 247 38.9
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 1.9e-32 143.7 198 44.4
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 2.5e-32 143.3 196 41.3
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 3.3e-32 142.9 197 44.7
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 4.7e-31 139.0 195 41.0
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 1.8e-30 137.1 246 38.6
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 1.8e-30 137.1 204 42.2
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 6.8e-30 135.2 191 41.4
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 1.5e-29 134.0 250 39.6
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 3.4e-29 132.9 252 40.1
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 5.8e-29 132.1 244 38.5
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 9.8e-29 131.3 248 37.9
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 1.3e-28 131.0 195 41.0
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 1.7e-28 130.6 195 41.5
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 1.7e-28 130.6 195 41.5
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 2.9e-28 129.8 243 35.8
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 1.1e-27 127.9 200 40.5
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 2.4e-27 126.7 207 42.0
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 3.2e-27 126.3 198 40.4
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 3.2e-27 126.3 205 39.5
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 4.1e-27 125.9 205 40.5
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 4.1e-27 125.9 205 40.5
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 5.4e-27 125.6 201 38.3
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 7.0e-27 125.2 205 41.5
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 9.2e-27 124.8 205 41.0
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 1.2e-26 124.4 202 38.1
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 2.0e-26 123.6 199 40.7
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 4.6e-26 122.5 204 39.7
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 6.0e-26 122.1 204 39.2
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 6.0e-26 122.1 201 37.8
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 6.0e-26 122.1 199 41.2
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 7.8e-26 121.7 198 40.4
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 1.3e-25 120.9 208 38.0
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 1.7e-25 120.6 228 37.7
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 2.3e-25 120.2 197 38.6
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 5.0e-25 119.0 199 39.2
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 6.6e-25 118.6 200 39.5
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 8.6e-25 118.2 200 39.5
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 1.5e-24 117.5 197 39.1
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 1.9e-24 117.1 248 35.5
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 2.5e-24 116.7 237 36.7
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 2.5e-24 116.7 237 36.7
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 3.3e-24 116.3 235 34.9
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 4.3e-24 115.9 201 38.3
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 1.2e-23 114.4 201 38.8
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 1.6e-23 114.0 245 31.8
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 4.7e-23 112.5 200 38.0
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 1.4e-22 110.9 224 37.1
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 3.1e-22 109.8 247 34.0
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 4.0e-22 109.4 242 33.9
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 4.0e-22 109.4 223 36.8
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 5.2e-22 109.0 237 37.6
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 2.6e-21 106.7 220 35.5
Eucgr.A00853 Eucalyptus grandis HOM05D007287 ORTHO05D008965 9.8e-21 104.8 230 30.9
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 2.4e-19 100.1 221 35.7
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 5.4e-19 99.0 138 42.8
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 7.0e-19 98.6 256 32.8
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 3.5e-18 96.3 200 37.0
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 3.5e-18 96.3 220 33.6
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 4.6e-18 95.9 196 35.2
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 6.0e-18 95.5 196 35.2
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 1.3e-17 94.4 194 28.9
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 1.3e-17 94.4 265 31.7
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 3.0e-17 93.2 200 36.0
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 3.0e-17 93.2 198 34.3
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.5e-16 90.9 162 34.6
TWI53G0571 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 3.3e-16 89.7 186 34.9
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 4.3e-16 89.4 131 42.0
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 1.6e-15 87.4 239 30.1
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 1.6e-15 87.4 146 37.7
VMungo1127G2237 Vigna mungo HOM05D007287 ORTHO05D008965 3.6e-15 86.3 226 34.1
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 2.3e-14 83.6 203 32.5
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 8.9e-14 81.6 168 31.0
TPR.G30730 Trifolium pratense HOM05D007287 ORTHO05D008965 1.2e-13 81.3 213 32.9
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 1.7e-12 77.4 138 31.2
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 3.7e-12 76.3 146 31.5
VMungo0464G2164 Vigna mungo HOM05D007287 ORTHO05D008965 8.3e-12 75.1 160 37.5
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.9e-11 73.9 117 40.2
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 4.1e-11 72.8 199 33.2
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 5.4e-11 72.4 196 29.6
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 7.1e-11 72.0 198 30.8
Aqoxy1G02348 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.2e-10 71.2 140 33.6
COL.COLO4_12535 Corchorus olitorius HOM05D007287 ORTHO05D008965 1.2e-10 71.2 133 36.8
SGA_v2.0_scaffold240G44057 Striga asiatica HOM05D007287 ORTHO05D008965 1.2e-10 71.2 173 31.8
Os12g0119350 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 2.1e-10 70.5 138 29.0
DCAR_023246 Daucus carota HOM05D007287 ORTHO05D008965 2.7e-10 70.1 148 32.4
THA.LOC104806658 Tarenaya hassleriana HOM05D009615 ORTHO05D011760 1.7e-09 67.4 135 31.9
Aqoxy1G03140 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 2.3e-09 67.0 139 32.4
HPP92_018079 Vanilla planifolia HOM05D007287 ORTHO05D008965 3.9e-09 66.2 183 28.4
Actinidia32578 Actinidia chinensis HOM05D007287 ORTHO05D008965 6.6e-09 65.5 97 39.2
Gohir.A12G000800 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.2e-07 61.2 103 37.9
DCAR_011429 Daucus carota HOM05D054201 ORTHO05D008965 2.8e-07 60.1 180 28.3
Ca_18906_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 4.7e-07 59.3 173 30.1
HPP92_007548 Vanilla planifolia HOM05D043753 ORTHO05D051585 1.4e-06 57.8 130 28.5
HPP92_028105 Vanilla planifolia HOM05D043753 ORTHO05D051585 1.4e-06 57.8 130 28.5
AT2G28330 Arabidopsis thaliana HOM05D009615 ORTHO05D011760 3.1e-06 56.6 122 33.6
Sp4g11120 Schrenkiella parvula HOM05D009615 ORTHO05D011760 3.1e-06 56.6 78 37.2
THA.LOC104806274 Tarenaya hassleriana HOM05D009615 ORTHO05D011760 4.0e-06 56.2 132 32.6
BolC4t23814H Brassica oleracea HOM05D009615 ORTHO05D011760 5.2e-06 55.8 80 38.8
AL4G21750 Arabidopsis lyrata HOM05D009615 ORTHO05D011760 6.8e-06 55.5 141 31.2
DCAR_010225 Daucus carota HOM05D054201 ORTHO05D008965 6.8e-06 55.5 185 29.2
CARHR121260 Cardamine hirsuta HOM05D009615 ORTHO05D011760 8.9e-06 55.1 142 28.9


User provided reference genes

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